IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
784	 38.64	0	792216..792554	+	112	125623666	ps326	llmg_0817	-	hypothetical protein
785	 35.83	0	792551..793231	+	226	125623667	ps327	llmg_0818	-	hypothetical protein
786	 31.96	-1	793311..793529	+	72	125623668	ps328	llmg_0819	-	hypothetical protein
787	 43.10	+1	793526..793699	+	57	125623669	ps329	llmg_0820	-	hypothetical protein
788	 32.63	0	794054..794479	+	141	125623670	ps330	llmg_0821	-	hypothetical protein
789	 39.95	+1	794656..795879	+	407	125623671	tnp712	llmg_0822	-	transposase for insertion sequence element IS712D
790	 35.84	0	795891..796649	+	252	125623672	-	llmg_0823	-	putative transposase helper protein for IS712D
791	 36.45	0	797030..797542	+	170	125623673	ps333	llmg_0824	-	terminase small subunit
792	 35.52	0	797532..798767	+	411	125623674	ps334	llmg_0825	-	terminase large subunit
793	 33.86	0	798777..800285	+	502	125623675	ps335	llmg_0826	-	portal protein
794	 32.29	-1	800675..800962	+	95	125623676	ps336	llmg_0830	-	hypothetical protein
795	 37.16	0	800968..802065	+	365	125623677	ps337	llmg_0831	-	hypothetical protein
796	 29.57	-1	802098..802628	+	176	125623678	ps338	llmg_0832	-	hypothetical protein
797	 27.04	-2	802688..802846	+	52	125623679	ps339	llmg_0833	-	hypothetical protein
798	 35.90	0	802843..803115	-	90	125623680	ps340	llmg_0834	-	hypothetical protein
799	 39.23	0	803292..803918	+	208	125623681	ps341	llmg_0835	-	hypothetical protein
800	 39.23	0	803930..805048	+	372	125623682	ps342	llmg_0836	-	major head protein
801	 39.34	0	805069..805401	+	110	125623683	ps343	llmg_0837	-	hypothetical protein
802	 39.27	0	805382..805735	+	117	125623684	ps344	llmg_0838	-	hypothetical protein
803	 38.43	0	805719..806267	+	182	125623685	ps345	llmg_0839	-	hypothetical protein
804	 33.33	0	806267..806629	+	120	125623686	ps346	llmg_0840	-	hypothetical protein
805	 37.44	0	806642..807055	+	137	125623687	ps347	llmg_0841	-	major tail protein
806	 37.47	0	807132..807542	+	136	125623688	ps348	llmg_0842	-	hypothetical protein
807	 34.30	0	807629..807937	+	102	125623689	ps349	llmg_0843	-	hypothetical protein
808	 37.97	0	807969..812669	+	1566	125623690	ps350	llmg_0844	-	hypothetical protein
809	 35.79	0	812681..813046	+	121	125623691	ps351	llmg_0845	-	hypothetical protein
810	 33.65	0	813058..815595	+	845	125623692	ps352	llmg_0846	-	hypothetical protein
811	 37.28	0	815729..817222	+	497	125623693	ps353	llmg_0848	-	hypothetical protein
812	 33.66	0	817303..817608	+	101	125623694	ps354	llmg_0849	-	hypothetical protein
813	 35.56	0	817595..817819	+	74	125623695	ps355	llmg_0850	-	putative holin
814	 39.53	0	817816..819105	+	429	125623696	ps356	llmg_0851	-	endolysin
815	 26.67	-2	819287..820246	+	319	125623697	ps357	llmg_0852	-	hypothetical protein
816	 35.86	0	820437..820673	+	78	125623698	ps358	llmg_0853	-	hypothetical protein
817	 36.41	0	821178..821600	+	140	125623699	-	llmg_0854	-	hypothetical protein
818	 32.35	-1	821605..821910	+	101	125623700	-	llmg_0855	-	hypothetical protein
819	 39.85	+1	822270..823712	+	480	125623701	-	llmg_0856	-	hypothetical protein
820	 36.56	0	823766..824446	-	226	125623702	kdgR	llmg_0857	-	GntR family transcription regulator
821	 35.96	0	824842..826476	+	544	125623703	uxuB	llmg_0858	-	fructuronate reductase
822	 39.37	0	826582..827658	+	358	125623704	uxuA	llmg_0859	-	mannonate dehydratase
823	 39.03	0	827843..829369	+	508	125623705	uxuT	llmg_0860	-	Na-galactoside symporter
824	 31.86	-1	829429..830310	+	293	125623706	-	llmg_0861	-	hypothetical protein
825	 35.10	0	830323..831741	+	472	125623707	uxaC	llmg_0862	-	glucuronate isomerase
826	 42.37	+1	832691..833332	+	213	125623708	kdgA	llmg_0864	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
827	 30.24	-1	833507..835447	+	646	125623709	-	llmg_0865	-	BglG family transcriptional antiterminator
828	 33.67	0	835449..835748	+	99	125623710	-	llmg_0866	-	PTS system, unknown pentitol phosphotransferase enzyme IIB component
829	 38.47	0	835801..837201	+	466	125623711	ulaA	llmg_0867	-	ascorbate-specific PTS system enzyme IIC
830	 39.76	+1	837369..839345	+	658	125623712	tkt	llmg_0868	-	transketolase
831	 34.52	0	839513..839764	+	83	125623713	-	llmg_0869	-	hypothetical protein
832	 41.32	+1	840113..840976	+	287	125623714	-	llmg_0870	-	transporter
833	 39.50	0	841072..842157	+	361	125623715	asd	llmg_0871	-	aspartate-semialdehyde dehydrogenase
834	 37.61	0	842158..842625	+	155	125623716	-	llmg_0872	-	putative (di)nucleoside polyphosphate hydrolase
835	 36.18	0	842612..843067	+	151	125623717	-	llmg_0873	-	putative (di)nucleoside polyphosphate hydrolase
836	 37.36	0	843396..844289	+	297	125623718	dapA	llmg_0874	-	dihydrodipicolinate synthase
837	 35.71	0	844329..845000	-	223	125623719	-	llmg_0875	-	cation-transporting ATPase
838	 37.19	0	845351..847063	+	570	125623720	-	llmg_0876	-	metallo-beta-lactamase superfamily protein
839	 36.21	0	847112..850345	+	1077	125623721	-	llmg_0877	-	putative secreted protein
840	 39.37	0	850424..851980	+	518	125623722	ffh	llmg_0878	-	signal recognition particle protein
841	 33.70	0	852014..852556	-	180	125623723	speG	llmg_0879	-	spermidine acetyltransferase
842	 38.05	0	852641..853213	-	190	125623724	-	llmg_0880	-	putative oxidoreductase
843	 32.49	0	853408..854115	+	235	125623725	azlC	llmg_0881	-	branched chain amino acid ABC transporter
844	 30.58	-1	854102..854428	+	108	125623726	-	llmg_0882	-	hypothetical protein
845	 35.80	0	854545..854787	+	80	125623727	-	llmg_0883	-	hypothetical protein
846	 37.04	0	854784..856241	+	485	125623728	-	llmg_0884	-	hypothetical protein
847	 37.30	0	856402..857208	+	268	125623729	proB	llmg_0885	-	gamma-glutamyl kinase
848	 38.63	0	857316..858560	+	414	125623730	proA	llmg_0886	-	gamma-glutamyl phosphate reductase
849	 38.45	0	858798..859715	-	305	125623731	-	llmg_0887	-	cation transport protein
850	 31.00	-1	859705..860004	-	99	125623732	rarA	llmg_0888	-	ArsR family transcriptional regulator
851	 34.62	0	860109..860807	+	232	125623733	-	llmg_0889	-	hypothetical protein
852	 39.46	0	861083..861604	+	173	125623734	pyrR	llmg_0890	-	pyrimidine regulatory protein PyrR
853	 39.13	0	861704..862996	+	430	125623735	pyrP	llmg_0891	-	uracil permease (Uracil transporter)
854	 38.91	0	863245..864177	+	310	125623736	pyrB	llmg_0893	-	aspartate carbamoyltransferase catalytic subunit
855	 39.20	0	864265..865338	+	357	125623737	carA	llmg_0894	-	carbamoyl phosphate synthase small subunit
856	 33.70	0	865499..865771	-	90	125623738	-	llmg_0895	-	hypothetical protein
857	 40.30	+1	865869..866270	-	133	125623739	-	llmg_0896	-	hypothetical protein
858	 32.61	0	866339..867028	-	229	125623740	-	llmg_0897	-	putative secreted protein
859	 28.40	-2	867411..867572	+	53	125623741	-	llmg_0898	-	hypothetical protein
860	 31.35	-1	867654..867956	+	100	125623742	-	llmg_0899	-	hypothetical protein
861	 36.78	0	868074..868334	+	86	125623743	ymbI	llmg_0900	-	hypothetical protein
862	 36.07	0	868346..869185	+	279	125623744	tnp981	llmg_0901	-	transposase for insertion sequence element IS981H
863	 35.56	0	869928..870332	+	134	125623745	arsC	llmg_0902	-	arsenate reductase
864	 32.14	-1	870444..871280	+	278	125623746	-	llmg_0903	-	putative serine/threonine phosphatase
865	 39.80	+1	871373..872284	+	303	125623747	-	llmg_0904	-	immunogenic secreted protein precursor-like protein
866	 34.16	0	872521..872883	+	120	125623748	-	llmg_0905	-	hypothetical protein
867	 38.21	0	873207..873452	+	81	125623749	rpmE	llmg_0906	-	50S ribosomal protein L31 type B
868	 32.20	-1	873585..874115	+	176	125623750	-	llmg_0907	-	hypothetical protein
869	 38.82	0	874271..874963	+	230	125623751	llrA	llmg_0908	-	two-component system regulator llrA
870	 35.95	0	874950..876440	+	496	125623752	kinA	llmg_0909	-	sensor protein kinase kinA
871	 40.18	+1	876626..877867	+	413	125623753	amtB	llmg_0910	-	ammonium transporter AmtB
872	 35.67	0	877949..878290	+	113	125623754	glnB	llmg_0911	-	nitrogen regulatory protein P-II
873	 36.67	0	878459..879808	+	449	125623755	murD	llmg_0912	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
874	 36.50	0	880051..881124	+	357	125623756	murG	llmg_0913	-	N-acetylglucosaminyl transferase
875	 35.65	0	881125..882291	+	388	125623757	ftsQ	llmg_0914	-	cell division protein ftsQ
876	 40.79	+1	882441..883754	+	437	125623758	obgE	llmg_0915	-	GTPase ObgE
877	 32.75	0	883782..883952	+	56	125623759	-	llmg_0916	-	hypothetical protein
878	 31.67	-1	884001..884603	-	200	125623760	-	llmg_0917	-	hypothetical protein
879	 32.67	0	884971..885270	+	99	125623761	-	llmg_0918	-	hypothetical protein
880	 40.91	+1	886205..886996	+	263	125623762	-	llmg_0920	-	putative secreted protein
881	 37.29	0	887034..887792	+	252	125623763	-	llmg_0921	-	putative secreted protein
882	 43.39	+2	887830..888585	+	251	125623764	-	llmg_0922	-	putative secreted protein
883	 32.11	-1	893584..894645	+	353	125623765	-	llmg_0924	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.