IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
631	 33.99	0	648202..648354	-	50	125623513	-	llmg_0653	-	hypothetical protein
632	 34.62	0	648490..649110	-	206	125623514	-	llmg_0654	-	transposase for insertion sequence element IS-LL6B
633	 38.41	0	649272..649547	-	91	125623515	-	llmg_0655	-	transposase
634	 38.38	0	649642..650532	-	296	125623516	tnp982	llmg_0656	-	transposase for insertion sequence element IS982B
635	 37.87	0	650883..654059	+	1058	125623517	hsdR	llmg_0658	-	type I restriction-modification system restriction subunit
636	 39.87	+1	654041..655678	+	545	125623518	hsdM	llmg_0659	-	putative type I site-specific deoxyribonuclease
637	 31.02	-1	655644..656894	+	416	125623519	hsdS	llmg_0660	-	specificity determinant HsdS
638	 31.97	-1	657080..658030	+	316	125623520	-	llmg_0661	-	CorA like magnesium and cobalt transport protein
639	 46.60	+2	659931..660578	+	215	125623521	pcp	llmg_0663	-	pyrrolidone-carboxylate peptidase
640	 35.67	0	660769..661965	-	398	125623522	amd	llmg_0664	-	amidase/aminoacylase
641	 40.65	+1	663030..664286	+	418	125623523	oxlT	llmg_0666	-	oxalate/formate antiporter
642	 30.19	-1	665114..665431	+	105	125623524	-	llmg_0668	-	hypothetical protein
643	 45.75	+2	665705..665857	-	50	125623525	-	llmg_0669	-	hypothetical protein
644	 28.38	-2	665908..666210	-	100	125623526	-	llmg_0670	-	hypothetical protein
645	 31.64	-1	666207..666383	-	58	125623527	-	llmg_0671	-	hypothetical protein
646	 24.51	-2	666858..666959	+	33	125623528	-	llmg_0672	-	hypothetical protein
647	 28.48	-2	666946..667563	-	205	125623529	-	llmg_0673	-	hypothetical protein
648	 38.47	0	667840..668520	-	226	125623530	tnp1297	llmg_0674	-	transposase for insertion sequence element IS1297
649	 37.92	0	668849..669088	+	79	125623531	-	llmg_0675	-	hypothetical protein
650	 31.12	-1	669248..669745	-	165	125623532	-	llmg_0676	-	acetyltransferase
651	 26.29	-2	670033..670245	+	70	125623533	-	llmg_0677	-	putative secreted protein
652	 36.78	0	671109..671369	-	86	125623534	-	llmg_0678	-	putative transposase helper protein for IS981
653	 25.00	-2	671499..671690	+	63	125623535	-	llmg_0679	-	hypothetical protein
654	 27.68	-2	671742..671918	+	58	125623536	-	llmg_0680	-	hypothetical protein
655	 30.86	-1	672065..672550	+	161	125623537	-	llmg_0681	-	hypothetical protein
656	 39.95	+1	672799..674022	+	407	125623538	tnp712	llmg_0682	-	transposase for insertion sequence element IS712B
657	 35.84	0	674034..674792	+	252	125623539	-	llmg_0683	-	putative transposase helper protein for IS712B
658	 36.55	0	675028..675867	+	279	125623540	tnp981	llmg_0684	-	transposase for insertion sequence element IS981E
659	 28.57	-2	676555..676701	+	48	125623541	-	llmg_0685	-	hypothetical protein
660	 32.27	-1	677108..677389	+	93	125623542	-	llmg_0686	-	hypothetical protein
661	 32.74	0	677973..678140	+	55	125623543	-	llmg_0687	-	hypothetical protein
662	 28.38	-2	678147..678449	+	100	125623544	-	llmg_0688	-	hypothetical protein
663	 40.31	+1	678500..678628	+	42	125623545	-	llmg_0689	-	hypothetical protein
664	 40.58	+1	678701..680563	+	620	125623546	-	llmg_0690	-	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
665	 32.32	-1	680949..681047	+	32	125623547	-	llmg_0691	-	hypothetical protein
666	 35.53	0	681269..681496	+	75	125623548	-	llmg_0692	-	hypothetical protein
667	 36.43	0	681542..682090	+	182	125623549	-	llmg_0693	-	putative stress induced DNA binding protein
668	 37.54	0	682176..682865	+	229	125623550	flpB	llmg_0694	-	transcriptional regulator FNR like protein B
669	 28.68	-2	683191..683319	+	42	125623551	-	llmg_0695	-	hypothetical protein
670	 25.86	-2	683306..683479	-	57	125623552	-	llmg_0696	-	hypothetical protein
671	 37.17	0	683542..684558	+	338	125623553	oppD	llmg_0697	-	oligopeptide transport ATP-binding protein oppD
672	 35.31	0	684555..685514	+	319	125623554	oppF	llmg_0698	-	oligopeptide transport ATP-binding protein oppF
673	 38.02	0	685495..686454	+	319	125623555	oppB	llmg_0699	-	peptide transport system permease protein oppB
674	 36.72	0	686464..687348	+	294	125623556	oppC	llmg_0700	-	oligopeptide transport system permease protein oppC
675	 36.88	0	687458..689260	+	600	125623557	oppA	llmg_0701	-	oligopeptide-binding protein oppA precursor
676	 34.87	0	689385..691268	+	627	125623558	pepO	llmg_0702	-	endopeptidase O
677	 33.94	0	691571..692890	+	439	125623559	tnp1675	llmg_0703	-	putative transposase
678	 36.27	0	693318..693521	+	67	125623560	-	llmg_0704	-	hypothetical protein
679	 26.85	-2	693514..693837	+	107	125623561	-	llmg_0705	-	hypothetical protein
680	 30.50	-1	694246..694527	+	93	125623562	-	llmg_0706	-	hypothetical protein
681	 28.93	-1	694698..695015	-	105	125623563	-	llmg_0707	-	hypothetical protein
682	 30.07	-1	694993..695268	-	91	125623564	-	llmg_0708	-	hypothetical protein
683	 32.46	0	695498..695842	+	114	125623565	-	llmg_0709	-	PadR-like family transcriptional regulator
684	 30.31	-1	695839..696666	+	275	125623566	-	llmg_0710	-	hypothetical protein
685	 36.58	0	696901..697455	+	184	125623567	tnpR	llmg_0711	-	DNA-invertase/resolvase
686	 31.68	-1	697799..698404	-	201	125623568	-	llmg_0712	-	hypothetical protein
687	 30.00	-1	698417..698596	-	59	125623569	-	llmg_0713	-	hypothetical protein
688	 35.95	0	698693..699532	-	279	125623570	tnp981	llmg_0714	-	transposase for insertion sequence element IS981F
689	 32.37	0	699794..700417	+	207	125623571	-	llmg_0715	-	hypothetical protein
690	 30.21	-1	700636..700923	+	95	125623572	-	llmg_0716	-	hypothetical protein
691	 38.03	0	701028..701708	-	226	125623573	tnp946	llmg_0717	-	transposase for insertion sequence element IS946
692	 29.51	-1	702975..703628	+	217	125623574	-	llmg_0718	-	putative nucleotide binding protein
693	 29.29	-1	703621..704781	+	386	125623575	-	llmg_0719	-	ABC transporter substrate-binding protein
694	 37.16	0	704818..705078	+	86	125623576	-	llmg_0720	-	hypothetical protein
695	 36.55	0	705090..705929	+	279	125623577	tnp981	llmg_0721	-	transposase for insertion sequence element IS981G
696	 38.84	0	706170..707441	-	423	125623578	serS	llmg_0722	-	seryl-tRNA synthetase
697	 36.11	0	707840..708199	-	119	125623579	-	llmg_0724	-	hypothetical protein
698	 36.35	0	708350..709045	+	231	125623580	-	llmg_0725	-	hypothetical protein
699	 33.33	0	709070..709453	-	127	125623581	-	llmg_0726	-	hypothetical protein
700	 41.88	+1	709596..710519	-	307	125623582	ptnD	llmg_0727	-	mannose-specific PTS system component IID
701	 46.62	+2	710538..711350	-	270	125623583	ptnC	llmg_0728	-	mannose-specific PTS system component IIC
702	 43.03	+1	711429..712418	-	329	125623584	ptnAB	llmg_0729	-	PTS system, mannose-specific IIAB components
703	 36.27	0	712688..712891	-	67	125623585	fer	llmg_0730	-	ferredoxin
704	 39.38	0	712938..713450	+	170	125623586	-	llmg_0731	-	putative secreted protein
705	 35.75	0	713570..714232	+	220	125623587	cmk	llmg_0732	-	cytidylate kinase
706	 36.14	0	714312..715703	+	463	125623588	-	llmg_0733	-	cell envelope-related transcriptional attenuator
707	 36.71	0	715942..716562	+	206	125623589	-	llmg_0734	-	putative amidase
708	 32.81	0	717923..718498	+	191	125623590	-	llmg_0736	-	hypothetical protein
709	 38.18	0	718629..719495	-	288	125623591	malG	llmg_0737	-	maltose ABC transporter permease protein malG
710	 36.88	0	719501..720883	-	460	125623592	malF	llmg_0738	-	maltose transport system permease protein malF
711	 37.48	0	720962..722191	-	409	125623593	malE	llmg_0739	-	maltose ABC transporter substrate binding protein
712	 36.41	0	722564..724318	+	584	125623594	dexC	llmg_0740	-	neopullulanase
713	 36.53	0	724633..726228	+	531	125623595	dexA	llmg_0741	-	oligo-1,6-alpha-glucosidase
714	 39.93	+1	726255..726860	+	201	125623596	maa	llmg_0742	-	maltose O-acetyltransferase
715	 39.68	+1	726850..728424	+	524	125623597	amyY	llmg_0743	-	alpha-amylase
716	 37.39	0	728467..730092	+	541	125623598	agl	llmg_0744	-	alpha-glucosidase
717	 36.61	0	730115..732370	+	751	125623599	mapA	llmg_0745	-	maltose phosphorylase
718	 36.72	0	732522..733496	+	324	125623600	malR	llmg_0746	-	maltose operon transcriptional repressor
719	 31.69	-1	733674..734342	+	222	125623601	llrF	llmg_0747	-	two-component system regulator llrF
720	 35.59	0	734558..735928	+	456	125623602	kinF	llmg_0748	-	sensor protein kinase kinF
721	 37.41	0	736077..737819	+	580	125623603	dxsB	llmg_0749	-	1-deoxy-D-xylulose-5-phosphate synthase
722	 41.76	+1	737939..738211	+	90	125623604	-	llmg_0750	-	hypothetical protein
723	 37.87	0	738330..739763	+	477	125623605	arb	llmg_0751	-	6-phospho-beta-glucosidase
724	 34.85	0	740024..742729	+	901	125623606	pip	llmg_0752	-	phage infection protein
725	 34.14	0	742828..743568	+	246	125623607	ubiE	llmg_0753	-	ubiquinone/menaquinone biosynthesis methyltransferase
726	 32.85	0	743605..744438	+	277	125623608	-	llmg_0754	-	Rgg family transcriptional regulator
727	 33.59	0	744506..744895	+	129	125623609	-	llmg_0755	-	hypothetical protein
728	 34.30	0	744892..745509	+	205	125623610	-	llmg_0756	-	putative secreted protein
729	 30.65	-1	745499..745759	+	86	125623611	-	llmg_0757	-	hypothetical protein
730	 37.17	0	745928..747466	+	512	125623612	eriC	llmg_0758	-	putative chloride channel protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.