IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
599	 36.31	0	610648..611487	-	279	125623481	tnp981	llmg_0621	-	transposase for insertion sequence element IS981B
600	 36.78	0	611499..611759	-	86	125623482	-	llmg_0622	-	hypothetical protein
601	 27.75	-2	611839..612519	+	226	125623483	abiP	llmg_0623	-	abortive phage resistance protein abiP
602	 33.33	0	613053..613724	-	223	125623484	-	llmg_0624	-	ABC transporter ATP-binding protein
603	 33.89	0	613726..614799	-	357	125623485	-	llmg_0625	-	ABC transporter permease
604	 31.58	-1	614811..615380	-	189	125623486	-	llmg_0626	-	putative transcriptional regulator
605	 38.45	0	615570..617093	-	507	125623487	fadD	llmg_0627	-	long-chain acyl-CoA synthetase
606	 33.77	0	617287..618204	+	305	125623488	-	llmg_0628	-	divalent cation transport-related protein
607	 38.16	0	618464..620827	+	787	125623489	pfl	llmg_0629	-	formate acetyltransferase
608	 32.42	0	620956..621615	+	219	125623490	coaE	llmg_0630	-	dephospho-CoA kinase
609	 38.59	0	621618..622835	+	405	125623491	pmrA	llmg_0631	-	multidrug resistance efflux pump
610	 30.61	-1	622832..622978	+	48	125623492	rpmG	llmg_0632	-	50S ribosomal protein L33
611	 35.87	0	623355..624617	+	420	125623493	ftsW1	llmg_0633	-	cell division protein ftsW1
612	 39.54	0	624722..628135	+	1137	125623494	pycA	llmg_0634	-	pyruvate carboxylase
613	 32.35	-1	628261..629586	+	441	125623495	gltA	llmg_0635	-	methylcitrate synthase
614	 34.71	0	629583..632129	+	848	125623496	citB	llmg_0636	-	aconitate hydratase
615	 35.67	0	632149..633387	+	412	125623497	icd	llmg_0637	-	isocitrate dehydrogenase
616	 38.67	0	633447..634046	-	199	125623498	clpP	llmg_0638	-	ATP-dependent Clp protease proteolytic subunit
617	 29.38	-1	634242..634772	+	176	125623499	-	llmg_0639	-	hypothetical protein
618	 36.09	0	634943..635341	+	132	125623500	spxA	llmg_0640	-	transcriptional regulator Spx
619	 42.22	+1	635494..635628	-	44	125623501	-	llmg_0641	-	putative secreted protein
620	 33.16	0	635725..636888	-	387	125623502	-	llmg_0642	-	hypothetical protein
621	 35.40	0	637215..639971	+	918	125623503	pacL	llmg_0643	-	cation transporter E1-E2 family ATPase
622	 30.83	-1	640489..640968	+	159	125623504	-	llmg_0644	-	hypothetical protein
623	 31.83	-1	640986..641516	+	176	125623505	-	llmg_0645	-	hypothetical protein
624	 33.42	0	641521..642735	+	404	125623506	icaA	llmg_0646	-	intercellular adhesion protein A
625	 36.19	0	643149..643988	-	279	125623507	tnp981	llmg_0647	-	transposase for insertion sequence element IS981C
626	 37.16	0	644000..644260	-	86	125623508	-	llmg_0648	-	hypothetical protein
627	 32.00	-1	644291..645115	+	274	125623509	icaB	llmg_0649	-	intercellular adhesion protein icaB
628	 36.30	0	645202..646551	-	449	125623510	brnQ	llmg_0650	-	branched chain amino acid ABC transporter carrier protein
629	 32.97	0	646767..647039	-	90	125623511	-	llmg_0651	-	putative acetyltransferase
630	 38.98	0	647207..647968	-	253	125623512	-	llmg_0652	-	transposase for insertion sequence element IS904C
631	 33.99	0	648202..648354	-	50	125623513	-	llmg_0653	-	hypothetical protein
632	 34.62	0	648490..649110	-	206	125623514	-	llmg_0654	-	transposase for insertion sequence element IS-LL6B
633	 38.41	0	649272..649547	-	91	125623515	-	llmg_0655	-	transposase
634	 38.38	0	649642..650532	-	296	125623516	tnp982	llmg_0656	-	transposase for insertion sequence element IS982B
635	 37.87	0	650883..654059	+	1058	125623517	hsdR	llmg_0658	-	type I restriction-modification system restriction subunit
636	 39.87	+1	654041..655678	+	545	125623518	hsdM	llmg_0659	-	putative type I site-specific deoxyribonuclease
637	 31.02	-1	655644..656894	+	416	125623519	hsdS	llmg_0660	-	specificity determinant HsdS
638	 31.97	-1	657080..658030	+	316	125623520	-	llmg_0661	-	CorA like magnesium and cobalt transport protein
639	 46.60	+2	659931..660578	+	215	125623521	pcp	llmg_0663	-	pyrrolidone-carboxylate peptidase
640	 35.67	0	660769..661965	-	398	125623522	amd	llmg_0664	-	amidase/aminoacylase
641	 40.65	+1	663030..664286	+	418	125623523	oxlT	llmg_0666	-	oxalate/formate antiporter
642	 30.19	-1	665114..665431	+	105	125623524	-	llmg_0668	-	hypothetical protein
643	 45.75	+2	665705..665857	-	50	125623525	-	llmg_0669	-	hypothetical protein
644	 28.38	-2	665908..666210	-	100	125623526	-	llmg_0670	-	hypothetical protein
645	 31.64	-1	666207..666383	-	58	125623527	-	llmg_0671	-	hypothetical protein
646	 24.51	-2	666858..666959	+	33	125623528	-	llmg_0672	-	hypothetical protein
647	 28.48	-2	666946..667563	-	205	125623529	-	llmg_0673	-	hypothetical protein
648	 38.47	0	667840..668520	-	226	125623530	tnp1297	llmg_0674	-	transposase for insertion sequence element IS1297
649	 37.92	0	668849..669088	+	79	125623531	-	llmg_0675	-	hypothetical protein
650	 31.12	-1	669248..669745	-	165	125623532	-	llmg_0676	-	acetyltransferase
651	 26.29	-2	670033..670245	+	70	125623533	-	llmg_0677	-	putative secreted protein
652	 36.78	0	671109..671369	-	86	125623534	-	llmg_0678	-	putative transposase helper protein for IS981
653	 25.00	-2	671499..671690	+	63	125623535	-	llmg_0679	-	hypothetical protein
654	 27.68	-2	671742..671918	+	58	125623536	-	llmg_0680	-	hypothetical protein
655	 30.86	-1	672065..672550	+	161	125623537	-	llmg_0681	-	hypothetical protein
656	 39.95	+1	672799..674022	+	407	125623538	tnp712	llmg_0682	-	transposase for insertion sequence element IS712B
657	 35.84	0	674034..674792	+	252	125623539	-	llmg_0683	-	putative transposase helper protein for IS712B
658	 36.55	0	675028..675867	+	279	125623540	tnp981	llmg_0684	-	transposase for insertion sequence element IS981E
659	 28.57	-2	676555..676701	+	48	125623541	-	llmg_0685	-	hypothetical protein
660	 32.27	-1	677108..677389	+	93	125623542	-	llmg_0686	-	hypothetical protein
661	 32.74	0	677973..678140	+	55	125623543	-	llmg_0687	-	hypothetical protein
662	 28.38	-2	678147..678449	+	100	125623544	-	llmg_0688	-	hypothetical protein
663	 40.31	+1	678500..678628	+	42	125623545	-	llmg_0689	-	hypothetical protein
664	 40.58	+1	678701..680563	+	620	125623546	-	llmg_0690	-	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
665	 32.32	-1	680949..681047	+	32	125623547	-	llmg_0691	-	hypothetical protein
666	 35.53	0	681269..681496	+	75	125623548	-	llmg_0692	-	hypothetical protein
667	 36.43	0	681542..682090	+	182	125623549	-	llmg_0693	-	putative stress induced DNA binding protein
668	 37.54	0	682176..682865	+	229	125623550	flpB	llmg_0694	-	transcriptional regulator FNR like protein B
669	 28.68	-2	683191..683319	+	42	125623551	-	llmg_0695	-	hypothetical protein
670	 25.86	-2	683306..683479	-	57	125623552	-	llmg_0696	-	hypothetical protein
671	 37.17	0	683542..684558	+	338	125623553	oppD	llmg_0697	-	oligopeptide transport ATP-binding protein oppD
672	 35.31	0	684555..685514	+	319	125623554	oppF	llmg_0698	-	oligopeptide transport ATP-binding protein oppF
673	 38.02	0	685495..686454	+	319	125623555	oppB	llmg_0699	-	peptide transport system permease protein oppB
674	 36.72	0	686464..687348	+	294	125623556	oppC	llmg_0700	-	oligopeptide transport system permease protein oppC
675	 36.88	0	687458..689260	+	600	125623557	oppA	llmg_0701	-	oligopeptide-binding protein oppA precursor
676	 34.87	0	689385..691268	+	627	125623558	pepO	llmg_0702	-	endopeptidase O
677	 33.94	0	691571..692890	+	439	125623559	tnp1675	llmg_0703	-	putative transposase
678	 36.27	0	693318..693521	+	67	125623560	-	llmg_0704	-	hypothetical protein
679	 26.85	-2	693514..693837	+	107	125623561	-	llmg_0705	-	hypothetical protein
680	 30.50	-1	694246..694527	+	93	125623562	-	llmg_0706	-	hypothetical protein
681	 28.93	-1	694698..695015	-	105	125623563	-	llmg_0707	-	hypothetical protein
682	 30.07	-1	694993..695268	-	91	125623564	-	llmg_0708	-	hypothetical protein
683	 32.46	0	695498..695842	+	114	125623565	-	llmg_0709	-	PadR-like family transcriptional regulator
684	 30.31	-1	695839..696666	+	275	125623566	-	llmg_0710	-	hypothetical protein
685	 36.58	0	696901..697455	+	184	125623567	tnpR	llmg_0711	-	DNA-invertase/resolvase
686	 31.68	-1	697799..698404	-	201	125623568	-	llmg_0712	-	hypothetical protein
687	 30.00	-1	698417..698596	-	59	125623569	-	llmg_0713	-	hypothetical protein
688	 35.95	0	698693..699532	-	279	125623570	tnp981	llmg_0714	-	transposase for insertion sequence element IS981F
689	 32.37	0	699794..700417	+	207	125623571	-	llmg_0715	-	hypothetical protein
690	 30.21	-1	700636..700923	+	95	125623572	-	llmg_0716	-	hypothetical protein
691	 38.03	0	701028..701708	-	226	125623573	tnp946	llmg_0717	-	transposase for insertion sequence element IS946
692	 29.51	-1	702975..703628	+	217	125623574	-	llmg_0718	-	putative nucleotide binding protein
693	 29.29	-1	703621..704781	+	386	125623575	-	llmg_0719	-	ABC transporter substrate-binding protein
694	 37.16	0	704818..705078	+	86	125623576	-	llmg_0720	-	hypothetical protein
695	 36.55	0	705090..705929	+	279	125623577	tnp981	llmg_0721	-	transposase for insertion sequence element IS981G
696	 38.84	0	706170..707441	-	423	125623578	serS	llmg_0722	-	seryl-tRNA synthetase
697	 36.11	0	707840..708199	-	119	125623579	-	llmg_0724	-	hypothetical protein
698	 36.35	0	708350..709045	+	231	125623580	-	llmg_0725	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.