IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
553	 34.10	0	562315..562704	-	129	125623435	-	llmg_0571	-	hypothetical protein
554	 31.32	-1	563010..563357	+	115	125623436	-	llmg_0572	-	MerR family transcriptional regulator
555	 35.78	0	563371..563697	+	108	125623437	-	llmg_0573	-	hypothetical protein
556	 38.74	0	563889..564332	-	147	125623438	fld	llmg_0574	-	flavodoxin
557	 34.44	0	566198..566827	+	209	125623439	-	llmg_0576	-	TetR family transcriptional regulator
558	 41.17	+1	567107..567961	+	284	125623440	pepM	llmg_0577	-	methionine aminopeptidase
559	 32.78	0	567981..568886	+	301	125623441	-	llmg_0578	-	putative tRNA-processing ribonuclease BN
560	 33.11	0	568989..569435	-	148	125623442	-	llmg_0579	-	hypothetical protein
561	 40.11	+1	569967..570143	+	58	125623443	-	llmg_0581	-	hypothetical protein
562	 39.44	0	570276..571208	+	310	125623444	ptsK	llmg_0582	-	HPr kinase/phosphorylase
563	 36.77	0	571270..572055	+	261	125623445	lgt	llmg_0583	-	prolipoprotein diacylglyceryl transferase
564	 38.33	0	572222..572641	+	139	125623446	-	llmg_0584	-	hypothetical protein
565	 33.87	0	572671..573231	+	186	125623447	-	llmg_0585	-	hypothetical protein
566	 39.82	+1	573365..574783	+	472	125623448	gnd	llmg_0586	-	6-phosphogluconate dehydrogenase
567	 37.65	0	577201..579216	+	671	125623449	kupB	llmg_0588	-	putative potassium transport system protein kupB
568	 40.94	+1	579269..579439	-	56	125623450	-	llmg_0589	-	hypothetical protein
569	 37.84	0	579634..580299	+	221	125623451	-	llmg_0590	-	hypothetical protein
570	 37.18	0	580430..581314	+	294	125623452	miaA	llmg_0591	-	tRNA delta(2)-isopentenylpyrophosphate transferase
571	 34.98	0	581460..582128	+	222	125623453	-	llmg_0592	-	hypothetical protein
572	 37.54	0	582293..583195	+	300	125623454	-	llmg_0593	-	prohibitin/stomatin like protein
573	 31.47	-1	583444..584460	-	338	125623455	ps201	llmg_0594	-	phage integrase
574	 27.24	-2	584681..585172	-	163	125623456	ps202	llmg_0595	-	hypothetical protein
575	 28.10	-2	585448..585657	-	69	125623457	ps203	llmg_0596	-	hypothetical protein
576	 33.33	0	585725..585976	-	83	125623458	ps204	llmg_0597	-	hypothetical protein
577	 25.14	-2	586213..586395	-	60	125623459	ps205	llmg_0598	-	cI-like repressor
578	 28.11	-2	586683..588290	+	535	125623460	-	llmg_0599	-	hypothetical protein
579	 31.84	-1	588208..589146	+	312	125623461	-	llmg_0600	-	glycosyl transferase
580	 38.01	0	589412..589903	-	163	125623462	-	llmg_0601	-	putative secreted protein
581	 30.93	-1	589916..590290	-	124	125623463	-	llmg_0602	-	hypothetical protein
582	 33.62	0	590635..590982	-	115	125623464	-	llmg_0603	-	HTH-type transcriptional regulator
583	 40.04	+1	591748..592671	+	307	125623465	-	llmg_0604	-	ribonuclease Z
584	 34.53	0	592616..593365	+	249	125623466	-	llmg_0605	-	oxidoreductase
585	 37.15	0	593538..595766	+	742	125623467	recJ	llmg_0606	-	single strand DNA-specific exonuclease
586	 40.35	+1	595890..596402	+	170	125623468	apt	llmg_0607	-	adenine phosphoribosyltransferase
587	 36.33	0	596618..597184	+	188	125623469	rpoE	llmg_0608	-	DNA-directed RNA polymerase delta chain
588	 35.41	0	597323..598960	+	545	125623470	pabC	llmg_0609	-	putative aminodeoxychorismate lyase
589	 35.46	0	599021..599491	+	156	125623471	greA	llmg_0610	-	transcription elongation factor greA
590	 36.02	0	599583..600140	+	185	125623472	-	llmg_0611	-	hypothetical protein
591	 37.80	0	601031..601321	+	96	125623473	-	llmg_0612	-	hypothetical protein
592	 38.98	0	601417..602178	+	253	125623474	-	llmg_0613	-	transposase for insertion sequence element IS904B
593	 36.40	0	602409..602864	+	151	125623475	ctsR	llmg_0614	-	transcriptional regulator ctsR
594	 38.60	0	602854..605304	+	816	125623476	clpC	llmg_0615	-	ATP-dependent Clp protease ATP-binding subunit
595	 37.99	0	605439..605996	+	185	125623477	yfiA	llmg_0616	-	putative sigma 54 modulation protein
596	 42.63	+1	606184..607485	+	433	125623478	eno	llmg_0617	-	phosphopyruvate hydratase
597	 33.65	0	607574..608509	+	311	125623479	xerD	llmg_0618	-	integrase-recombinase
598	 32.54	0	608636..609268	+	210	125623480	-	llmg_0619	-	putative secreted protein
599	 36.31	0	610648..611487	-	279	125623481	tnp981	llmg_0621	-	transposase for insertion sequence element IS981B
600	 36.78	0	611499..611759	-	86	125623482	-	llmg_0622	-	hypothetical protein
601	 27.75	-2	611839..612519	+	226	125623483	abiP	llmg_0623	-	abortive phage resistance protein abiP
602	 33.33	0	613053..613724	-	223	125623484	-	llmg_0624	-	ABC transporter ATP-binding protein
603	 33.89	0	613726..614799	-	357	125623485	-	llmg_0625	-	ABC transporter permease
604	 31.58	-1	614811..615380	-	189	125623486	-	llmg_0626	-	putative transcriptional regulator
605	 38.45	0	615570..617093	-	507	125623487	fadD	llmg_0627	-	long-chain acyl-CoA synthetase
606	 33.77	0	617287..618204	+	305	125623488	-	llmg_0628	-	divalent cation transport-related protein
607	 38.16	0	618464..620827	+	787	125623489	pfl	llmg_0629	-	formate acetyltransferase
608	 32.42	0	620956..621615	+	219	125623490	coaE	llmg_0630	-	dephospho-CoA kinase
609	 38.59	0	621618..622835	+	405	125623491	pmrA	llmg_0631	-	multidrug resistance efflux pump
610	 30.61	-1	622832..622978	+	48	125623492	rpmG	llmg_0632	-	50S ribosomal protein L33
611	 35.87	0	623355..624617	+	420	125623493	ftsW1	llmg_0633	-	cell division protein ftsW1
612	 39.54	0	624722..628135	+	1137	125623494	pycA	llmg_0634	-	pyruvate carboxylase
613	 32.35	-1	628261..629586	+	441	125623495	gltA	llmg_0635	-	methylcitrate synthase
614	 34.71	0	629583..632129	+	848	125623496	citB	llmg_0636	-	aconitate hydratase
615	 35.67	0	632149..633387	+	412	125623497	icd	llmg_0637	-	isocitrate dehydrogenase
616	 38.67	0	633447..634046	-	199	125623498	clpP	llmg_0638	-	ATP-dependent Clp protease proteolytic subunit
617	 29.38	-1	634242..634772	+	176	125623499	-	llmg_0639	-	hypothetical protein
618	 36.09	0	634943..635341	+	132	125623500	spxA	llmg_0640	-	transcriptional regulator Spx
619	 42.22	+1	635494..635628	-	44	125623501	-	llmg_0641	-	putative secreted protein
620	 33.16	0	635725..636888	-	387	125623502	-	llmg_0642	-	hypothetical protein
621	 35.40	0	637215..639971	+	918	125623503	pacL	llmg_0643	-	cation transporter E1-E2 family ATPase
622	 30.83	-1	640489..640968	+	159	125623504	-	llmg_0644	-	hypothetical protein
623	 31.83	-1	640986..641516	+	176	125623505	-	llmg_0645	-	hypothetical protein
624	 33.42	0	641521..642735	+	404	125623506	icaA	llmg_0646	-	intercellular adhesion protein A
625	 36.19	0	643149..643988	-	279	125623507	tnp981	llmg_0647	-	transposase for insertion sequence element IS981C
626	 37.16	0	644000..644260	-	86	125623508	-	llmg_0648	-	hypothetical protein
627	 32.00	-1	644291..645115	+	274	125623509	icaB	llmg_0649	-	intercellular adhesion protein icaB
628	 36.30	0	645202..646551	-	449	125623510	brnQ	llmg_0650	-	branched chain amino acid ABC transporter carrier protein
629	 32.97	0	646767..647039	-	90	125623511	-	llmg_0651	-	putative acetyltransferase
630	 38.98	0	647207..647968	-	253	125623512	-	llmg_0652	-	transposase for insertion sequence element IS904C
631	 33.99	0	648202..648354	-	50	125623513	-	llmg_0653	-	hypothetical protein
632	 34.62	0	648490..649110	-	206	125623514	-	llmg_0654	-	transposase for insertion sequence element IS-LL6B
633	 38.41	0	649272..649547	-	91	125623515	-	llmg_0655	-	transposase
634	 38.38	0	649642..650532	-	296	125623516	tnp982	llmg_0656	-	transposase for insertion sequence element IS982B
635	 37.87	0	650883..654059	+	1058	125623517	hsdR	llmg_0658	-	type I restriction-modification system restriction subunit
636	 39.87	+1	654041..655678	+	545	125623518	hsdM	llmg_0659	-	putative type I site-specific deoxyribonuclease
637	 31.02	-1	655644..656894	+	416	125623519	hsdS	llmg_0660	-	specificity determinant HsdS
638	 31.97	-1	657080..658030	+	316	125623520	-	llmg_0661	-	CorA like magnesium and cobalt transport protein
639	 46.60	+2	659931..660578	+	215	125623521	pcp	llmg_0663	-	pyrrolidone-carboxylate peptidase
640	 35.67	0	660769..661965	-	398	125623522	amd	llmg_0664	-	amidase/aminoacylase
641	 40.65	+1	663030..664286	+	418	125623523	oxlT	llmg_0666	-	oxalate/formate antiporter
642	 30.19	-1	665114..665431	+	105	125623524	-	llmg_0668	-	hypothetical protein
643	 45.75	+2	665705..665857	-	50	125623525	-	llmg_0669	-	hypothetical protein
644	 28.38	-2	665908..666210	-	100	125623526	-	llmg_0670	-	hypothetical protein
645	 31.64	-1	666207..666383	-	58	125623527	-	llmg_0671	-	hypothetical protein
646	 24.51	-2	666858..666959	+	33	125623528	-	llmg_0672	-	hypothetical protein
647	 28.48	-2	666946..667563	-	205	125623529	-	llmg_0673	-	hypothetical protein
648	 38.47	0	667840..668520	-	226	125623530	tnp1297	llmg_0674	-	transposase for insertion sequence element IS1297
649	 37.92	0	668849..669088	+	79	125623531	-	llmg_0675	-	hypothetical protein
650	 31.12	-1	669248..669745	-	165	125623532	-	llmg_0676	-	acetyltransferase
651	 26.29	-2	670033..670245	+	70	125623533	-	llmg_0677	-	putative secreted protein
652	 36.78	0	671109..671369	-	86	125623534	-	llmg_0678	-	putative transposase helper protein for IS981
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.