IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.99   STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
10	 42.71	+1	13521..13712	+	63	125622892	-	llmg_0010	-	hypothetical protein
11	 28.19	-2	13947..14432	+	161	125622893	-	llmg_0011	-	hypothetical protein
12	 36.68	0	14436..15002	+	188	125622894	pth	llmg_0012	-	peptidyl-tRNA hydrolase
13	 35.96	0	15003..18545	+	1180	125622895	mfd	llmg_0013	-	transcription-repair coupling factor
14	 34.07	0	18862..19131	+	89	125622896	-	llmg_0015	-	putative RNA binding protein
15	 30.40	-1	19162..19536	+	124	125622897	-	llmg_0016	-	hypothetical protein
16	 30.56	-1	19536..19859	+	107	125622898	-	llmg_0017	-	hypothetical protein
17	 34.09	0	20021..21337	+	438	125622899	-	llmg_0018	-	beta-lactamase A
18	 34.44	0	21334..22602	+	422	125622900	mesJ	llmg_0019	-	cell cycle protein mesJ
19	 33.33	0	22583..23134	+	183	125622901	hpt	llmg_0020	-	hypoxanthine phosphoribosyltransferase
20	 40.18	+1	23340..25427	+	695	125622902	ftsH	llmg_0021	-	putative cell division protein
21	 38.65	0	26494..28317	+	607	125622903	mtlA	llmg_0022	-	PTS system, mannitol-specific IIBC component
22	 32.35	-1	28377..30311	+	644	125622904	mtlR	llmg_0023	-	transcriptional regulator mtl operon mtlR
23	 34.03	0	30358..30789	+	143	125622905	mtlF	llmg_0024	-	PTS system, mannitol-specific IIA component
24	 35.39	0	30938..32104	+	388	125622906	mtlD	llmg_0025	-	mannitol-1-phosphate 5-dehydrogenase
25	 37.65	0	32974..33297	-	107	125622907	ps130	llmg_0026	-	hypothetical protein
26	 36.75	0	33398..33778	-	126	125622908	ps129	llmg_0027	-	hypothetical protein
27	 36.96	0	33806..34108	-	100	125622909	ps128	llmg_0028	-	hypothetical protein
28	 39.18	0	34425..35006	-	193	125622910	ps127	llmg_0029	-	hypothetical protein
29	 40.33	+1	35242..36870	-	542	125622911	ps126	llmg_0030	-	putative DNA primase
30	 43.40	+2	36881..37675	-	264	125622912	ps125	llmg_0031	-	phage DNA replication
31	 40.18	+1	37672..38007	-	111	125622913	ps124	llmg_0032	-	hypothetical protein
32	 40.39	+1	38004..38258	-	84	125622914	ps123	llmg_0033	-	hypothetical protein
33	 39.58	0	38255..38494	-	79	125622915	ps122	llmg_0034	-	hypothetical protein
34	 34.04	0	38536..38817	-	93	125622916	ps121	llmg_0035	-	putative DNA binding protein
35	 37.09	0	38829..39254	-	141	125622917	ps120	llmg_0036	-	hypothetical protein
36	 33.33	0	39259..39453	-	64	125622918	ps119	llmg_0037	-	hypothetical protein
37	 39.25	0	39569..39754	-	61	125622919	ps118	llmg_0038	-	hypothetical protein
38	 28.75	-2	39837..40163	+	108	125622920	ps117	llmg_0039	-	hypothetical protein
39	 28.70	-2	40519..40734	-	71	125622921	ps116	llmg_0040	-	phage repressor
40	 38.30	0	40860..41282	+	140	125622922	ps115	llmg_0041	-	phage repressor
41	 40.36	+1	41312..41866	+	184	125622923	ps114	llmg_0042	-	hypothetical protein
42	 19.91	-2	41977..42207	+	76	125622924	ps113	llmg_0043	-	hypothetical protein
43	 33.85	0	42280..42474	+	64	125622925	ps112	llmg_0044	-	hypothetical protein
44	 40.12	+1	43098..44423	+	441	125622926	ps111	llmg_0045	-	hypothetical protein
45	 35.75	0	44505..44711	+	68	125622927	ps110	llmg_0046	-	hypothetical protein
46	 29.63	-1	45201..45443	+	80	125622928	ps109	llmg_0047	-	hypothetical protein
47	 32.00	-1	45579..45803	+	74	125622929	ps108	llmg_0048	-	Ps108 protein
48	 39.95	+1	46467..47690	+	407	125622930	tnp712	llmg_0049	-	transposase for insertion sequence element IS712A
49	 35.84	0	47702..48460	+	252	125622931	-	llmg_0050	-	putative transposase helper protein for IS712A
50	 29.05	-1	48562..48888	+	108	125622932	ps105	llmg_0051	-	hypothetical protein
51	 31.88	-1	49396..49533	+	45	125622933	ps104	llmg_0052	-	hypothetical protein
52	 35.15	0	49622..49786	+	54	125622934	ps103	llmg_0053	-	hypothetical protein
53	 33.66	0	49908..50213	+	101	125622935	ps102	llmg_0054	-	hypothetical protein
54	 36.71	0	50463..51647	+	394	125622936	ps101	llmg_0055	-	phage integrase
55	 32.44	0	52156..52938	-	260	125622937	-	llmg_0056	-	hypothetical protein
56	 32.24	-1	53631..53996	+	121	125622938	-	llmg_0057	-	hypothetical protein
57	 31.50	-1	54401..54892	+	163	125622939	-	llmg_0059	-	hypothetical protein
58	 28.93	-1	55405..55563	+	52	125622940	-	llmg_0060	-	hypothetical protein
59	 30.60	-1	55905..56453	+	182	125622941	-	llmg_0061	-	putative acetyltransferase
60	 35.29	0	56574..56777	+	67	125622942	-	llmg_0062	-	hypothetical protein
61	 37.71	0	56870..58492	-	540	125622943	-	llmg_0063	-	putative sulphate transporter
62	 39.12	0	58702..59877	-	391	125622944	tnp905	llmg_0064	-	transposase for insertion sequence element IS905A
63	 34.29	0	60023..60544	+	173	125622945	-	llmg_0065	-	GNAT family acetyltransferase
64	 38.10	0	60873..62048	+	391	125622946	araT	llmg_0066	-	aromatic amino acid aminotransferase
65	 32.80	0	62146..62901	+	251	125622947	recO	llmg_0067	-	DNA repair protein RecO
66	 31.63	-1	63015..63896	+	293	125622948	-	llmg_0069	-	HTH-type transcriptional regulator
67	 33.74	0	64007..65242	+	411	125622949	-	llmg_0070	-	putative permease
68	 40.17	+1	65273..66691	-	472	125622950	pdhD	llmg_0071	-	dihydrolipoamide dehydrogenase
69	 41.05	+1	66910..68502	-	530	125622951	pdhC	llmg_0072	-	pyruvate dehydrogenase complex E2 component
70	 41.90	+1	68495..69475	-	326	125622952	pdhB	llmg_0073	-	pyruvate dehydrogenase E1 component beta subunit
71	 41.78	+1	69478..70602	-	374	125622953	pdhA	llmg_0074	-	pyruvate dehydrogenase E1 component alpha subunit
72	 40.82	+1	70691..71692	-	333	125622954	lplL	llmg_0075	-	lipoate-protein ligase
73	 33.92	0	71885..72739	-	284	125622955	-	llmg_0076	-	glycerophosphodiester phosphodiesterase
74	 35.79	0	72818..73468	-	216	125622956	-	llmg_0077	-	putative phosphohydrolase
75	 36.39	0	73518..73844	-	108	125622957	-	llmg_0078	-	hypothetical protein
76	 40.64	+1	73937..74962	-	341	125622958	trpS	llmg_0079	-	tryptophanyl-tRNA synthetase II
77	 39.73	+1	75461..75898	+	145	125622959	osmC	llmg_0080	-	osmotically inducible protein C
78	 34.78	0	76060..77373	+	437	125622960	-	llmg_0081	-	putative amino-acid permease
79	 26.50	-2	77433..77783	+	116	125622961	-	llmg_0082	-	hypothetical protein
80	 39.76	+1	77843..78838	-	331	125622962	plsX	llmg_0083	-	putative glycerol-3-phosphate acyltransferase PlsX
81	 37.88	0	78941..79753	-	270	125622963	-	llmg_0084	-	putative hydrolase
82	 39.07	0	80129..81766	-	545	125622964	-	llmg_0085	-	ABC transporter ATP-binding protein
83	 32.94	0	82266..82520	+	84	125622965	-	llmg_0086	-	hypothetical protein
84	 41.45	+1	82640..83464	-	274	125622966	-	llmg_0087	-	putative short-chain type dehydrogenase
85	 33.33	0	83680..84249	+	189	125622967	-	llmg_0088	-	hypothetical protein
86	 37.80	0	85125..85706	-	193	125622968	-	llmg_0089	-	putative HTH-type transcriptional regulator
87	 31.47	-1	85894..86376	-	160	125622969	-	llmg_0090	-	hypothetical protein
88	 40.12	+1	86633..87913	-	426	125622970	cysD	llmg_0091	-	O-acetylhomoserine sulfhydrylase
89	 39.69	+1	88166..88999	-	277	125622971	-	llmg_0092	-	putative short-chain type dehydrogenase
90	 36.32	0	89403..89870	+	155	125622972	-	llmg_0093	-	hypothetical protein
91	 34.85	0	89996..90193	+	65	125622973	-	llmg_0094	-	hypothetical protein
92	 36.88	0	90229..90849	+	206	125622974	-	llmg_0095	-	putative esterase
93	 40.17	+1	90917..92086	+	389	125622975	-	llmg_0096	-	putatve glyoxylase protein
94	 37.56	0	92097..92687	+	196	125622976	-	llmg_0097	-	putative flavoprotein oxygenase
95	 32.00	-1	92769..92918	-	49	125622977	rpmG	llmg_0098	-	50S ribosomal protein L33
96	 44.25	+2	92948..93121	-	57	125622978	rpmF	llmg_0099	-	50S ribosomal protein L32
97	 40.07	+1	93484..95265	+	593	125622979	cadA	llmg_0100	-	cation-transporting ATPase
98	 38.40	0	95452..96300	+	282	125622980	-	llmg_0101	-	hypothetical protein
99	 35.88	0	96310..97095	-	261	125622981	parA	llmg_0102	-	chromosome partitioning protein parA
100	 38.89	0	97150..98409	-	419	125622982	cshA	llmg_0103	-	recombination factor protein RarA
101	 36.46	0	98453..98995	-	180	125622983	-	llmg_0104	-	acetyltransferase
102	 36.11	0	99114..99581	+	155	125622984	-	llmg_0105	-	hypothetical protein
103	 37.97	0	99611..101164	+	517	125622985	-	llmg_0106	-	ABC transporter ATP-binding protein
104	 32.63	0	101239..101523	+	94	125622986	-	llmg_0107	-	hypothetical protein
105	 37.66	0	101605..102297	+	230	125622987	-	llmg_0108	-	S-adenosylmethionine-dependent methyltransferase
106	 39.02	0	102281..102772	+	163	125622988	-	llmg_0109	-	hypothetical protein
107	 40.78	+1	102785..103738	+	317	125622989	prmA	llmg_0110	-	ribosomal protein L11 methyltransferase
108	 38.38	0	103858..104610	+	250	125622990	-	llmg_0111	-	hypothetical protein
109	 37.51	0	104640..105596	+	318	125622991	-	llmg_0112	-	putative xylanase/chitin deacetylase
35.99	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.