IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
460	 36.50	0	467926..468840	+	304	125623342	-	llmg_0475	-	malate/lactate dehydrogenase
461	 38.49	0	468875..469747	-	290	125623343	-	llmg_0476	-	hypothetical protein
462	 41.29	+1	470104..470304	-	66	125623344	-	llmg_0477	-	hypothetical protein
463	 33.14	0	470360..470872	-	170	125623345	ntd	llmg_0478	-	nucleoside deoxyribosyltransferase
464	 37.48	0	470856..471410	-	184	125623346	-	llmg_0479	-	hypothetical protein
465	 32.11	-1	471410..472063	-	217	125623347	dukA	llmg_0480	-	deoxyguanosine kinase
466	 38.74	0	472626..473660	+	344	125623348	-	llmg_0481	-	hypothetical protein
467	 38.06	0	473713..474897	+	394	125623349	-	llmg_0482	-	hypothetical protein
468	 36.79	0	475040..478252	+	1070	125623350	dnaE	llmg_0483	-	DNA polymerase III DnaE
469	 34.65	0	478340..479329	+	329	125623351	-	llmg_0484	-	LacI family transcription regulator
470	 31.31	-1	479423..479818	+	131	125623352	-	llmg_0485	-	hypothetical protein
471	 29.71	-1	479811..480086	+	91	125623353	-	llmg_0486	-	hypothetical protein
472	 38.37	0	480171..482471	+	766	125623354	-	llmg_0487	-	putative trehalose/maltose hydrolase
473	 39.65	+1	482525..483790	+	421	125623355	-	llmg_0488	-	multiple sugar-binding protein precursor
474	 34.13	0	483966..484841	+	291	125623356	-	llmg_0489	-	sugar transport system permease protein
475	 36.85	0	484822..485673	+	283	125623357	-	llmg_0490	-	sugar transport system permease protein
476	 38.53	0	485703..486356	-	217	125623358	hly	llmg_0491	-	hemolysin like protein
477	 39.07	0	486558..487394	+	278	125623359	-	llmg_0492	-	hypothetical protein
478	 36.55	0	487449..488288	+	279	125623360	-	llmg_0493	-	putative esterase/lipase
479	 39.39	0	488285..489505	+	406	125623361	nagZ	llmg_0494	-	putative beta-N-acetylglucosaminidase
480	 33.33	0	489514..490170	+	218	125623362	-	llmg_0495	-	hypothetical protein
481	 39.49	0	490275..490550	+	91	125623363	hllA	llmg_0496	-	HU-like DNA-binding protein
482	 32.73	0	490661..491158	-	165	125623364	-	llmg_0497	-	hypothetical protein
483	 34.12	0	491341..491850	+	169	125623365	ogt	llmg_0498	-	6-O-methylguanine-DNA methyltransferase
484	 34.06	0	491865..492413	+	182	125623366	adaA	llmg_0499	-	methylphosphotriester-DNA alkyltransferase
485	 31.59	-1	492425..493228	+	267	125623367	nhoA	llmg_0500	-	arylamine N-acetyltransferase 2
486	 30.62	-1	493375..494184	+	269	125623368	-	llmg_0501	-	ABC transporter ATP binding protein
487	 31.40	-1	494181..494906	+	241	125623369	-	llmg_0502	-	ABC transporter permease protein
488	 29.19	-1	494968..495426	+	152	125623370	-	llmg_0503	-	LytR family transcriptional regulator
489	 29.89	-1	495423..495800	+	125	125623371	-	llmg_0504	-	hypothetical protein
490	 38.48	0	495909..497054	+	381	125623372	nifZ	llmg_0505	-	pyridoxal-phosphate dependent aminotransferase
491	 35.49	0	497205..498083	+	292	125623373	-	llmg_0506	-	hypothetical protein
492	 37.33	0	498140..499789	-	549	125623374	-	llmg_0507	-	peptide binding protein
493	 41.91	+1	499981..500913	-	310	125623375	-	llmg_0508	-	cysteine synthase
494	 39.23	0	501132..502217	+	361	125623376	acmD	llmg_0509	-	N-acetylglucosaminidase
495	 36.97	0	502253..502885	-	210	125623377	-	llmg_0510	-	Zn-dependent hydrolase
496	 39.72	+1	502886..504967	-	693	125623378	ponA	llmg_0511	-	penicillin-binding protein 1a
497	 35.98	0	504954..505595	-	213	125623379	recU	llmg_0512	-	Holliday junction-specific endonuclease
498	 29.90	-1	505676..506200	+	174	125623380	-	llmg_0513	-	hypothetical protein
499	 37.31	0	506345..506746	+	133	125623381	-	llmg_0514	-	hypothetical protein
500	 36.52	0	506967..507248	+	93	125623382	-	llmg_0515	-	hypothetical protein
501	 33.99	0	507232..507993	+	253	125623383	suhB	llmg_0516	-	putative myo-inositol-1(or 4)-monophosphatase
502	 39.27	0	508088..509368	+	426	125623384	murA2	llmg_0517	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
503	 30.21	-1	509368..509559	+	63	125623385	-	llmg_0518	-	hypothetical protein
504	 36.99	0	509736..511019	+	427	125623386	tig	llmg_0519	-	trigger factor
505	 34.90	0	517878..519791	+	637	125623387	dnaG	llmg_0520	-	DNA primase
506	 38.32	0	519868..521211	+	447	125623388	rpoD	llmg_0521	-	RNA polymerase sigma factor RpoD
507	 33.74	0	521309..522052	+	247	125623389	-	llmg_0522	-	putative transcriptional regulator
508	 40.29	+1	522209..523588	+	459	125623390	glpT	llmg_0523	-	glycerol-3-phosphatase transporter
509	 35.49	0	523744..524346	+	200	125623391	-	llmg_0524	-	hypothetical protein
510	 35.90	0	524418..524612	+	64	125623392	-	llmg_0525	-	hypothetical protein
511	 33.33	0	524622..525887	+	421	125623393	-	llmg_0526	-	hypothetical protein
512	 34.20	0	526116..526460	+	114	125623394	-	llmg_0527	-	hypothetical protein
513	 38.81	0	526506..528752	+	748	125623395	clpE	llmg_0528	-	ATP-dependent Clp protease ATP-binding subunit clpE
514	 38.43	0	528887..529357	-	156	125623396	-	llmg_0529	-	putative transcriptional regulator
515	 40.04	+1	529583..530596	+	337	125623397	gapA	llmg_0530	-	glyceraldehyde 3-phosphate dehydrogenase
516	 30.51	-1	530629..530805	-	58	125623398	-	llmg_0531	-	hypothetical protein
517	 39.47	0	530821..531456	-	211	125623399	def	llmg_0532	-	peptide deformylase
518	 33.11	0	531611..532066	+	151	125623400	nudH	llmg_0533	-	dinucleoside polyphosphate hydrolase
519	 39.11	0	532077..534155	+	692	125623401	uvrB	llmg_0534	-	excinuclease ABC subunit B
520	 33.09	0	534338..535159	+	273	125623402	gltS	llmg_0535	-	arginine-binding periplasmic protein 1 precursor
521	 37.43	0	535174..536295	+	373	125623403	argE	llmg_0536	-	acetylornithine deacetylase
522	 36.62	0	536347..536802	-	151	125623404	-	llmg_0538	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase
523	 40.11	+1	537078..537830	+	250	125623405	fabI	llmg_0539	-	enoyl-(acyl carrier protein) reductase
524	 38.42	0	538093..539055	-	320	125623406	oxaA2	llmg_0540	-	OxaA-like protein precursor
525	 36.23	0	539230..539988	-	252	125623407	pgmA	llmg_0541	-	alpha-phosphoglucomutase
526	 40.61	+1	540083..540673	-	196	125623408	-	llmg_0542	-	hypothetical protein
527	 37.06	0	540690..541226	-	178	125623409	dfpA	llmg_0543	-	phosphopantothenoylcysteine decarboxylase
528	 36.06	0	541219..541914	-	231	125623410	dfpB	llmg_0544	-	phosphopantothenate--cysteine ligase
529	 36.56	0	542061..542246	-	61	125623411	xylH	llmg_0546	-	4-oxalocrotonate tautomerase
530	 35.74	0	542442..544769	+	775	125623412	ctpE	llmg_0547	-	cation transporter E1-E2 family ATPase
531	 29.76	-1	544801..544968	+	55	125623413	-	llmg_0548	-	hypothetical protein
532	 36.31	0	545001..545840	-	279	125623414	tnp981	llmg_0549	-	transposase for insertion sequence element IS981A
533	 36.78	0	545852..546112	-	86	125623415	-	llmg_0550	-	hypothetical protein
534	 31.83	-1	546237..546833	+	198	125623416	-	llmg_0551	-	hypothetical protein
535	 32.49	0	546982..547338	+	118	125623417	-	llmg_0552	-	putative glyoxylase
536	 28.77	-1	547560..547844	+	94	125623418	-	llmg_0553	-	hypothetical protein
537	 39.20	0	548155..549330	-	391	125623419	tnp905	llmg_0554	-	transposase for insertion sequence element IS905B
538	 35.96	0	549717..550286	+	189	125623420	tdk	llmg_0555	-	thymidine kinase
539	 31.98	-1	550297..550740	+	147	125623421	-	llmg_0556	-	hypothetical protein
540	 37.34	0	550758..551831	+	357	125623422	prfA	llmg_0557	-	peptide chain release factor 1
541	 36.36	0	551831..552358	+	175	125623423	-	llmg_0558	-	hypothetical protein
542	 37.83	0	552428..553183	+	251	125623424	-	llmg_0559	-	NADPH-flavin oxidoreductase
543	 34.69	0	553288..554100	+	270	125623425	hemK	llmg_0560	-	putative protoporphyrinogen oxidase
544	 27.53	-2	554134..554598	+	154	125623426	-	llmg_0561	-	putative acetyltransferase
545	 34.53	0	554595..555515	+	306	125623427	-	llmg_0562	-	putative translation factor
546	 39.10	0	555748..556995	+	415	125623428	glyA	llmg_0563	-	serine hydroxymethyltransferase
547	 35.16	0	557176..557778	+	200	125623429	-	llmg_0564	-	putative soluble lytic murein transglycosylase
548	 34.70	0	557905..559002	+	365	125623430	serC	llmg_0565	-	phosphoserine aminotransferase
549	 37.18	0	558999..560195	+	398	125623431	serA	llmg_0566	-	D-3-phosphoglycerate dehydrogenase
550	 38.76	0	560241..560903	+	220	125623432	serB	llmg_0567	-	SerB protein
551	 38.10	0	560940..561233	-	97	125623433	-	llmg_0568	-	putative acylphosphate phosphohydrolase
552	 36.76	0	561345..562103	+	252	125623434	spoU	llmg_0570	-	rRNA methyltransferase
553	 34.10	0	562315..562704	-	129	125623435	-	llmg_0571	-	hypothetical protein
554	 31.32	-1	563010..563357	+	115	125623436	-	llmg_0572	-	MerR family transcriptional regulator
555	 35.78	0	563371..563697	+	108	125623437	-	llmg_0573	-	hypothetical protein
556	 38.74	0	563889..564332	-	147	125623438	fld	llmg_0574	-	flavodoxin
557	 34.44	0	566198..566827	+	209	125623439	-	llmg_0576	-	TetR family transcriptional regulator
558	 41.17	+1	567107..567961	+	284	125623440	pepM	llmg_0577	-	methionine aminopeptidase
559	 32.78	0	567981..568886	+	301	125623441	-	llmg_0578	-	putative tRNA-processing ribonuclease BN
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.