IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
399	 38.89	0	408233..408934	-	233	125623281	llrC	llmg_0414	-	two-component system regulator
400	 39.31	0	409112..409747	+	211	125623282	tdk	llmg_0415	-	thymidylate kinase
401	 33.10	0	409880..410740	+	286	125623283	holB	llmg_0416	-	DNA polymerase III subunit delta'
402	 35.50	0	410790..411572	+	260	125623284	-	llmg_0417	-	hypothetical protein
403	 35.47	0	411565..411891	+	108	125623285	-	llmg_0418	-	DNA replication intiation control protein YabA
404	 36.99	0	411891..412766	+	291	125623286	-	llmg_0419	-	hypothetical protein
405	 29.69	-1	412844..413035	-	63	125623287	-	llmg_0420	-	hypothetical protein
406	 41.70	+1	413110..413922	-	270	125623288	drrB	llmg_0421	-	daunorubicin resistance transmembrane protein
407	 32.61	0	413935..414072	-	45	125623289	-	llmg_0422	-	hypothetical protein
408	 40.49	+1	414082..414864	-	260	125623290	drrA	llmg_0423	-	daunorubicin resistance ABC transporter ATP-binding subunit
409	 33.33	0	414996..415496	+	166	125623291	-	llmg_0424	-	transcriptional regulator
410	 37.94	0	415627..416559	-	310	125623292	mvk	llmg_0425	-	mevalonate kinase
411	 38.56	0	416868..417824	+	318	125623293	mvaD	llmg_0426	-	diphosphomevalonate decarboxylase
412	 35.35	0	417811..418800	+	329	125623294	-	llmg_0427	-	phosphomevalonate kinase
413	 37.81	0	418923..419972	+	349	125623295	fni	llmg_0428	-	isopentenyl pyrophosphate isomerase
414	 38.65	0	420126..420746	+	206	125623296	sodA	llmg_0429	-	SodA protein
415	 40.76	+1	420997..423351	+	784	125623297	cstA	llmg_0430	-	carbon starvation protein A
416	 33.94	0	423532..424191	-	219	125623298	-	llmg_0431	-	putative acyl carrier protein phosphodiesterase 2
417	 35.25	0	424278..425216	+	312	125623299	-	llmg_0432	-	transcription regulator
418	 36.54	0	425365..426705	+	446	125623300	rheB	llmg_0433	-	ATP-dependent RNA helicase
419	 36.58	0	426709..427293	+	194	125623301	-	llmg_0434	-	hypothetical protein
420	 34.27	0	427409..428155	+	248	125623302	hexR	llmg_0435	-	putative HTH-type transcriptional regulator
421	 19.79	-2	428133..428228	+	31	125623303	-	llmg_0436	-	hypothetical protein
422	 39.45	0	428397..428723	+	108	125623304	ptcB	llmg_0437	-	cellobiose-specific PTS system IIB component
423	 40.74	+1	428806..429156	+	116	125623305	ptcA	llmg_0438	-	cellobiose-specific PTS system IIA component
424	 34.84	0	429250..429978	+	242	125623306	-	llmg_0439	-	LacI family transcription regulator
425	 40.73	+1	430271..431608	+	445	125623307	ptcC	llmg_0440	-	cellobiose-specific PTS system IIC component
426	 36.67	0	431698..433134	+	478	125623308	celA	llmg_0441	-	6-phospho-beta-glucosidase
427	 34.04	0	433420..433701	+	93	125623309	-	llmg_0442	-	hypothetical protein
428	 31.07	-1	433884..434060	+	58	125623310	-	llmg_0443	-	hypothetical protein
429	 38.86	0	434066..436126	+	686	125623311	ligA	llmg_0444	-	NAD-dependent DNA ligase LigA
430	 36.63	0	436267..437298	+	343	162329651	-	llmg_0445	-	putative lipid kinase
431	 39.23	0	437518..438654	+	378	125623313	msmK	llmg_0446	-	multiple sugar-binding transport ATP-binding protein
432	 40.33	+1	438961..442632	+	1223	125623314	nifJ	llmg_0447	-	NifJ protein
433	 37.20	0	442807..443685	+	292	125623315	-	llmg_0448	-	hypothetical protein
434	 28.82	-1	443675..443962	+	95	125623316	-	llmg_0449	-	hypothetical protein
435	 35.78	0	443980..444633	+	217	125623317	-	llmg_0450	-	hypothetical protein
436	 38.56	0	444678..446036	+	452	125623318	femD	llmg_0451	-	phosphoglucosamine mutase
437	 35.98	0	446110..446826	-	238	125623319	treR	llmg_0452	-	trehalose operon transcriptional repressor
438	 36.83	0	446937..447422	+	161	125623320	-	llmg_0453	-	sucrose-specific PTS enzyme IIABC
439	 39.21	0	447563..449128	+	521	125623321	-	llmg_0454	-	beta-glucoside-specific PTS system IIABC component
440	 38.35	0	449195..451504	+	769	125623322	trePP	llmg_0455	-	putative trehalose/maltose hydrolase
441	 38.14	0	451657..452322	+	221	125623323	pgmB	llmg_0456	-	beta-phosphoglucomutase
442	 37.50	0	452381..453148	-	255	125623324	-	llmg_0457	-	lipase/esterase (putative)
443	 36.34	0	453258..453956	+	232	125623325	-	llmg_0458	-	hypothetical protein
444	 35.35	0	454115..454561	+	148	125623326	-	llmg_0459	-	hypothetical protein
445	 37.57	0	454558..455076	+	172	125623327	-	llmg_0460	-	acetyltransferase
446	 38.91	0	455181..456560	+	459	125623328	lytR	llmg_0461	-	transcription regulator
447	 37.14	0	456961..457722	+	253	125623329	truA	llmg_0462	-	tRNA pseudouridine synthase A
448	 35.61	0	457756..458544	+	262	125623330	thiD2	llmg_0463	-	phosphomethylpyrimidine kinase
449	 39.12	0	458584..459084	+	166	125623331	-	llmg_0464	-	hypothetical protein
450	 40.33	+1	459065..459607	+	180	125623332	-	llmg_0465	-	hypothetical protein
451	 36.94	0	459608..460744	+	378	125623333	aspC	llmg_0466	-	putative aminotransferase
452	 40.98	+1	461021..462628	+	535	125623334	pyrG	llmg_0467	-	CTP synthetase
453	 42.41	+1	462840..463676	+	278	125623335	-	llmg_0468	-	hypothetical protein
454	 28.14	-2	463673..464230	+	185	125623336	-	llmg_0469	-	hypothetical protein
455	 43.31	+2	464462..465343	+	293	125623337	-	llmg_0470	-	hypothetical protein
456	 31.76	-1	465350..465922	+	190	125623338	-	llmg_0471	-	hypothetical protein
457	 31.38	-1	465930..466493	+	187	125623339	-	llmg_0472	-	hypothetical protein
458	 33.16	0	466853..467446	+	197	125623340	-	llmg_0473	-	hypothetical protein
459	 28.54	-2	467450..467908	+	152	125623341	-	llmg_0474	-	hypothetical protein
460	 36.50	0	467926..468840	+	304	125623342	-	llmg_0475	-	malate/lactate dehydrogenase
461	 38.49	0	468875..469747	-	290	125623343	-	llmg_0476	-	hypothetical protein
462	 41.29	+1	470104..470304	-	66	125623344	-	llmg_0477	-	hypothetical protein
463	 33.14	0	470360..470872	-	170	125623345	ntd	llmg_0478	-	nucleoside deoxyribosyltransferase
464	 37.48	0	470856..471410	-	184	125623346	-	llmg_0479	-	hypothetical protein
465	 32.11	-1	471410..472063	-	217	125623347	dukA	llmg_0480	-	deoxyguanosine kinase
466	 38.74	0	472626..473660	+	344	125623348	-	llmg_0481	-	hypothetical protein
467	 38.06	0	473713..474897	+	394	125623349	-	llmg_0482	-	hypothetical protein
468	 36.79	0	475040..478252	+	1070	125623350	dnaE	llmg_0483	-	DNA polymerase III DnaE
469	 34.65	0	478340..479329	+	329	125623351	-	llmg_0484	-	LacI family transcription regulator
470	 31.31	-1	479423..479818	+	131	125623352	-	llmg_0485	-	hypothetical protein
471	 29.71	-1	479811..480086	+	91	125623353	-	llmg_0486	-	hypothetical protein
472	 38.37	0	480171..482471	+	766	125623354	-	llmg_0487	-	putative trehalose/maltose hydrolase
473	 39.65	+1	482525..483790	+	421	125623355	-	llmg_0488	-	multiple sugar-binding protein precursor
474	 34.13	0	483966..484841	+	291	125623356	-	llmg_0489	-	sugar transport system permease protein
475	 36.85	0	484822..485673	+	283	125623357	-	llmg_0490	-	sugar transport system permease protein
476	 38.53	0	485703..486356	-	217	125623358	hly	llmg_0491	-	hemolysin like protein
477	 39.07	0	486558..487394	+	278	125623359	-	llmg_0492	-	hypothetical protein
478	 36.55	0	487449..488288	+	279	125623360	-	llmg_0493	-	putative esterase/lipase
479	 39.39	0	488285..489505	+	406	125623361	nagZ	llmg_0494	-	putative beta-N-acetylglucosaminidase
480	 33.33	0	489514..490170	+	218	125623362	-	llmg_0495	-	hypothetical protein
481	 39.49	0	490275..490550	+	91	125623363	hllA	llmg_0496	-	HU-like DNA-binding protein
482	 32.73	0	490661..491158	-	165	125623364	-	llmg_0497	-	hypothetical protein
483	 34.12	0	491341..491850	+	169	125623365	ogt	llmg_0498	-	6-O-methylguanine-DNA methyltransferase
484	 34.06	0	491865..492413	+	182	125623366	adaA	llmg_0499	-	methylphosphotriester-DNA alkyltransferase
485	 31.59	-1	492425..493228	+	267	125623367	nhoA	llmg_0500	-	arylamine N-acetyltransferase 2
486	 30.62	-1	493375..494184	+	269	125623368	-	llmg_0501	-	ABC transporter ATP binding protein
487	 31.40	-1	494181..494906	+	241	125623369	-	llmg_0502	-	ABC transporter permease protein
488	 29.19	-1	494968..495426	+	152	125623370	-	llmg_0503	-	LytR family transcriptional regulator
489	 29.89	-1	495423..495800	+	125	125623371	-	llmg_0504	-	hypothetical protein
490	 38.48	0	495909..497054	+	381	125623372	nifZ	llmg_0505	-	pyridoxal-phosphate dependent aminotransferase
491	 35.49	0	497205..498083	+	292	125623373	-	llmg_0506	-	hypothetical protein
492	 37.33	0	498140..499789	-	549	125623374	-	llmg_0507	-	peptide binding protein
493	 41.91	+1	499981..500913	-	310	125623375	-	llmg_0508	-	cysteine synthase
494	 39.23	0	501132..502217	+	361	125623376	acmD	llmg_0509	-	N-acetylglucosaminidase
495	 36.97	0	502253..502885	-	210	125623377	-	llmg_0510	-	Zn-dependent hydrolase
496	 39.72	+1	502886..504967	-	693	125623378	ponA	llmg_0511	-	penicillin-binding protein 1a
497	 35.98	0	504954..505595	-	213	125623379	recU	llmg_0512	-	Holliday junction-specific endonuclease
498	 29.90	-1	505676..506200	+	174	125623380	-	llmg_0513	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.