IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
350	 37.45	0	350418..352070	+	550	125623232	dppA	llmg_0362	-	dipeptide-binding protein precursor
351	 38.82	0	354096..355007	+	303	125623233	dppB	llmg_0364	-	dipeptide transport system permease protein dppB
352	 39.15	0	355023..356054	+	343	125623234	dppC	llmg_0365	-	dipeptide transport system permease protein dppC
353	 40.29	+1	356057..357106	+	349	125623235	dppD	llmg_0366	-	dipeptide transport ATP-binding protein dppD
354	 38.87	0	357106..358044	+	312	125623236	dppF	llmg_0367	-	dipeptide transport ATP-binding protein dppF
355	 39.57	0	358445..360016	+	523	125623237	prfC	llmg_0368	-	peptide chain release factor 3
356	 41.06	+1	360338..361993	+	551	125623238	rheA	llmg_0369	-	ATP-dependent RNA helicase
357	 35.56	0	362113..362202	-	29	125623239	-	llmg_0370	-	hypothetical protein
358	 35.64	0	362691..363602	+	303	125623240	era	llmg_0371	-	GTP-binding protein Era
359	 38.92	0	363700..365292	+	530	125623241	asnB	llmg_0372	-	asparagine synthetase B
360	 35.65	0	365484..366302	+	272	125623242	fpg	llmg_0373	-	formamidopyrimidine-DNA glycosylase
361	 39.18	0	366455..367618	+	387	125623243	recA	llmg_0374	-	recombinase A
362	 34.78	0	367634..369016	-	460	125623244	-	llmg_0375	-	amino acid permease
363	 37.68	0	369088..370467	-	459	125623245	-	llmg_0376	-	amino acid permease
364	 29.40	-1	370614..370994	+	126	125623246	-	llmg_0377	-	hypothetical protein
365	 33.02	0	370969..371292	+	107	125623247	-	llmg_0378	-	hypothetical protein
366	 33.72	0	371516..372034	+	172	125623248	-	llmg_0379	-	hypothetical protein
367	 35.02	0	372098..372691	-	197	125623249	-	llmg_0380	-	hypothetical protein
368	 29.62	-1	372911..373717	+	268	125623250	-	llmg_0381	-	hypothetical protein
369	 37.12	0	373905..374564	+	219	125623251	-	llmg_0382	-	putative GTP pyrophosphokinase
370	 38.01	0	374551..375363	+	270	125623252	ppnK	llmg_0383	-	inorganic polyphosphate/ATP-NAD kinase
371	 36.51	0	375363..376244	+	293	125623253	rluE	llmg_0384	-	ribosomal large subunit pseudouridine synthase
372	 33.81	0	376287..377120	-	277	125623254	ppiA	llmg_0385	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
373	 39.26	0	377428..378861	+	477	125623255	lysQ	llmg_0386	-	amino-acid permease lysQ
374	 38.31	0	379021..379824	+	267	125623256	-	llmg_0387	-	hypothetical protein
375	 32.82	0	379821..380798	+	325	125623257	apbE	llmg_0388	-	thiamine biosynthesis lipoprotein apbE precursor
376	 39.80	+1	380881..382365	-	494	125623258	lysS	llmg_0389	-	lysyl-tRNA synthetase
377	 33.82	0	382562..383380	-	272	125623259	rlrG	llmg_0390	-	LysR family transcriptional regulator
378	 34.74	0	383544..384539	+	331	125623260	-	llmg_0391	-	hypothetical protein
379	 35.03	0	384757..385701	-	314	125623261	ldhB	llmg_0392	-	L-lactate dehydrogenase
380	 30.90	-1	386016..386837	-	273	125623262	rlrD	llmg_0393	-	LysR family transcriptional regulator
381	 32.92	0	386993..387967	+	324	125623263	-	llmg_0394	-	putative permease protein
382	 37.02	0	388323..389543	+	406	125623264	thiI	llmg_0395	-	thiamine biosynthesis protein thiI
383	 35.97	0	391309..391914	+	201	125623265	-	llmg_0397	-	NAD(P)H dehydrogenase (quinone)
384	 38.16	0	392012..392446	+	144	125623266	-	llmg_0398	-	hypothetical protein
385	 36.66	0	392501..394543	-	680	125623267	nha	llmg_0399	-	Na+/H+ antiporter
386	 31.00	-1	394634..395104	-	156	125623268	-	llmg_0400	-	hypothetical protein
387	 37.46	0	395229..396488	-	419	125623269	tyrS	llmg_0401	-	tyrosyl-tRNA synthetase
388	 36.82	0	396633..399071	+	812	125623270	pbp1B	llmg_0402	-	penicillin-binding protein 1B
389	 41.76	+1	399112..400179	-	355	125623271	pepA	llmg_0403	-	glutamyl-aminopeptidase
390	 34.39	0	400282..400566	+	94	125623272	-	llmg_0405	-	hypothetical protein
391	 34.59	0	400611..400928	+	105	125623273	trxH	llmg_0406	-	thioredoxin H-type
392	 40.67	+1	401034..401660	+	208	125623274	pheT	llmg_0407	-	phenylalanyl-tRNA synthetase beta chain
393	 36.39	0	401822..403162	+	446	125623275	noxE	llmg_0408	-	NADH oxidase
394	 37.18	0	403253..403642	+	129	125623276	ssbA	llmg_0409	-	single-strand DNA-binding protein
395	 39.30	0	403761..404045	+	94	125623277	groES	llmg_0410	-	co-chaperonin GroES
396	 39.90	+1	404132..405760	+	542	125623278	groEL	llmg_0411	-	chaperonin GroEL
397	 35.55	0	405810..406622	-	270	125623279	vicX	llmg_0412	-	ribonuclease Z
398	 34.03	0	406813..408240	-	475	125623280	kinC	llmg_0413	-	sensor histidine kinase
399	 38.89	0	408233..408934	-	233	125623281	llrC	llmg_0414	-	two-component system regulator
400	 39.31	0	409112..409747	+	211	125623282	tdk	llmg_0415	-	thymidylate kinase
401	 33.10	0	409880..410740	+	286	125623283	holB	llmg_0416	-	DNA polymerase III subunit delta'
402	 35.50	0	410790..411572	+	260	125623284	-	llmg_0417	-	hypothetical protein
403	 35.47	0	411565..411891	+	108	125623285	-	llmg_0418	-	DNA replication intiation control protein YabA
404	 36.99	0	411891..412766	+	291	125623286	-	llmg_0419	-	hypothetical protein
405	 29.69	-1	412844..413035	-	63	125623287	-	llmg_0420	-	hypothetical protein
406	 41.70	+1	413110..413922	-	270	125623288	drrB	llmg_0421	-	daunorubicin resistance transmembrane protein
407	 32.61	0	413935..414072	-	45	125623289	-	llmg_0422	-	hypothetical protein
408	 40.49	+1	414082..414864	-	260	125623290	drrA	llmg_0423	-	daunorubicin resistance ABC transporter ATP-binding subunit
409	 33.33	0	414996..415496	+	166	125623291	-	llmg_0424	-	transcriptional regulator
410	 37.94	0	415627..416559	-	310	125623292	mvk	llmg_0425	-	mevalonate kinase
411	 38.56	0	416868..417824	+	318	125623293	mvaD	llmg_0426	-	diphosphomevalonate decarboxylase
412	 35.35	0	417811..418800	+	329	125623294	-	llmg_0427	-	phosphomevalonate kinase
413	 37.81	0	418923..419972	+	349	125623295	fni	llmg_0428	-	isopentenyl pyrophosphate isomerase
414	 38.65	0	420126..420746	+	206	125623296	sodA	llmg_0429	-	SodA protein
415	 40.76	+1	420997..423351	+	784	125623297	cstA	llmg_0430	-	carbon starvation protein A
416	 33.94	0	423532..424191	-	219	125623298	-	llmg_0431	-	putative acyl carrier protein phosphodiesterase 2
417	 35.25	0	424278..425216	+	312	125623299	-	llmg_0432	-	transcription regulator
418	 36.54	0	425365..426705	+	446	125623300	rheB	llmg_0433	-	ATP-dependent RNA helicase
419	 36.58	0	426709..427293	+	194	125623301	-	llmg_0434	-	hypothetical protein
420	 34.27	0	427409..428155	+	248	125623302	hexR	llmg_0435	-	putative HTH-type transcriptional regulator
421	 19.79	-2	428133..428228	+	31	125623303	-	llmg_0436	-	hypothetical protein
422	 39.45	0	428397..428723	+	108	125623304	ptcB	llmg_0437	-	cellobiose-specific PTS system IIB component
423	 40.74	+1	428806..429156	+	116	125623305	ptcA	llmg_0438	-	cellobiose-specific PTS system IIA component
424	 34.84	0	429250..429978	+	242	125623306	-	llmg_0439	-	LacI family transcription regulator
425	 40.73	+1	430271..431608	+	445	125623307	ptcC	llmg_0440	-	cellobiose-specific PTS system IIC component
426	 36.67	0	431698..433134	+	478	125623308	celA	llmg_0441	-	6-phospho-beta-glucosidase
427	 34.04	0	433420..433701	+	93	125623309	-	llmg_0442	-	hypothetical protein
428	 31.07	-1	433884..434060	+	58	125623310	-	llmg_0443	-	hypothetical protein
429	 38.86	0	434066..436126	+	686	125623311	ligA	llmg_0444	-	NAD-dependent DNA ligase LigA
430	 36.63	0	436267..437298	+	343	162329651	-	llmg_0445	-	putative lipid kinase
431	 39.23	0	437518..438654	+	378	125623313	msmK	llmg_0446	-	multiple sugar-binding transport ATP-binding protein
432	 40.33	+1	438961..442632	+	1223	125623314	nifJ	llmg_0447	-	NifJ protein
433	 37.20	0	442807..443685	+	292	125623315	-	llmg_0448	-	hypothetical protein
434	 28.82	-1	443675..443962	+	95	125623316	-	llmg_0449	-	hypothetical protein
435	 35.78	0	443980..444633	+	217	125623317	-	llmg_0450	-	hypothetical protein
436	 38.56	0	444678..446036	+	452	125623318	femD	llmg_0451	-	phosphoglucosamine mutase
437	 35.98	0	446110..446826	-	238	125623319	treR	llmg_0452	-	trehalose operon transcriptional repressor
438	 36.83	0	446937..447422	+	161	125623320	-	llmg_0453	-	sucrose-specific PTS enzyme IIABC
439	 39.21	0	447563..449128	+	521	125623321	-	llmg_0454	-	beta-glucoside-specific PTS system IIABC component
440	 38.35	0	449195..451504	+	769	125623322	trePP	llmg_0455	-	putative trehalose/maltose hydrolase
441	 38.14	0	451657..452322	+	221	125623323	pgmB	llmg_0456	-	beta-phosphoglucomutase
442	 37.50	0	452381..453148	-	255	125623324	-	llmg_0457	-	lipase/esterase (putative)
443	 36.34	0	453258..453956	+	232	125623325	-	llmg_0458	-	hypothetical protein
444	 35.35	0	454115..454561	+	148	125623326	-	llmg_0459	-	hypothetical protein
445	 37.57	0	454558..455076	+	172	125623327	-	llmg_0460	-	acetyltransferase
446	 38.91	0	455181..456560	+	459	125623328	lytR	llmg_0461	-	transcription regulator
447	 37.14	0	456961..457722	+	253	125623329	truA	llmg_0462	-	tRNA pseudouridine synthase A
448	 35.61	0	457756..458544	+	262	125623330	thiD2	llmg_0463	-	phosphomethylpyrimidine kinase
449	 39.12	0	458584..459084	+	166	125623331	-	llmg_0464	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.