IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
300	 35.48	0	296970..297761	-	263	125623182	-	llmg_0311	-	hypothetical protein
301	 37.62	0	298060..299109	+	349	125623183	phnD	llmg_0312	-	phosphonate ABC transporter, phosphonate-binding protein phnD
302	 36.71	0	299225..299965	+	246	125623184	phnC	llmg_0313	-	phosphonates import ATP-binding protein phnC
303	 36.78	0	299966..300778	+	270	125623185	phnB	llmg_0314	-	phosphonate transport system permease protein phnB
304	 38.27	0	300798..301607	+	269	125623186	-	llmg_0315	-	phosphonate ABC transporter permease
305	 36.53	0	301611..303173	+	520	125623187	cpdC	llmg_0316	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
306	 30.83	-1	303317..303436	+	39	125623188	-	llmg_0317	-	hypothetical protein
307	 35.40	0	303499..303981	+	160	125623189	tpx	llmg_0318	-	thiol peroxidase
308	 37.07	0	304150..306690	+	846	125623190	pepN	llmg_0319	-	PepN protein
309	 41.23	+1	306738..307928	-	396	125623191	napC	llmg_0320	-	multidrug-efflux transporter protein
310	 30.59	-1	308410..308883	-	157	125623192	napB	llmg_0321	-	MarR family transcriptional regulator
311	 36.92	0	308880..310163	-	427	125623193	-	llmg_0322	-	cation transporter
312	 36.75	0	310439..310789	+	116	125623194	-	llmg_0323	-	PadR-like family transcriptional regulator
313	 38.51	0	311092..312831	+	579	125623195	lmrC	llmg_0324	-	multidrug resistance protein C
314	 37.44	0	312835..314829	+	664	125623196	lmrD	llmg_0325	-	multidrug resistance protein D
315	 39.51	0	315003..316265	+	420	125623197	murA1	llmg_0326	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
316	 36.07	0	316311..316529	+	72	125623198	-	llmg_0327	-	hypothetical protein
317	 32.10	-1	316793..317443	+	216	125623199	-	llmg_0328	-	hypothetical protein
318	 34.09	0	317445..319160	+	571	125623200	-	llmg_0329	-	ABC transporter ATP binding and permease protein
319	 30.39	-1	319313..320194	+	293	125623201	-	llmg_0330	-	putative permease protein
320	 31.93	-1	320425..320781	-	118	125623202	-	llmg_0331	-	hypothetical protein
321	 38.80	0	320805..321353	-	182	125623203	-	llmg_0332	-	hypothetical protein
322	 35.85	0	321464..321940	-	158	125623204	-	llmg_0333	-	hypothetical protein
323	 39.89	+1	322003..322551	-	182	125623205	-	llmg_0334	-	hypothetical protein
324	 33.57	0	323286..324146	+	286	125623206	plpA	llmg_0335	-	D-methionine-binding lipoprotein plpA precursor
325	 34.84	0	324291..325151	+	286	125623207	plpB	llmg_0336	-	D-methionine-binding lipoprotein plpB precursor
326	 36.00	0	325297..326160	+	287	125623208	plpC	llmg_0338	-	D-methionine-binding lipoprotein plpC precursor
327	 40.21	+1	326229..326999	+	256	125623209	dar	llmg_0339	-	acetoin(diacetyl)reductase
328	 32.29	-1	327015..327875	+	286	125623210	plpD	llmg_0340	-	D-methionine-binding lipoprotein plpD precursor
329	 35.05	0	327999..329105	+	368	125623211	-	llmg_0341	-	amino acid ABC transporter ATP binding protein
330	 43.25	+2	329105..329800	+	231	125623212	-	llmg_0342	-	amino acid ABC transporter permease protein
331	 37.89	0	329843..330391	+	182	125623213	-	llmg_0343	-	hypothetical protein
332	 35.10	0	330510..332207	+	565	125623214	cbiO	llmg_0344	-	putative cobalt ABC transporter ATP-binding protein
333	 34.67	0	332200..333021	+	273	125623215	cbiQ	llmg_0345	-	putative cobalt ABC transporter permease protein
334	 37.18	0	333550..334329	+	259	125623216	fhuC	llmg_0346	-	ferrichrome ABC transporter fhuC
335	 38.49	0	334322..335272	+	316	125623217	fhuB	llmg_0347	-	ferrichrome ABC transporter permease protein
336	 36.00	0	335273..336211	+	312	125623218	fhuG	llmg_0348	-	ferrichrome ABC transporter permease protein
337	 35.99	0	336295..337236	+	313	125623219	fhuD	llmg_0349	-	ferrichrome ABC transporter substrate binding protein
338	 35.32	0	337298..338203	+	301	125623220	fhuR	llmg_0350	-	HTH-type transcriptional regulator fhuR
339	 38.01	0	338265..339440	-	391	125623221	araJ	llmg_0351	-	putative arabinose efflux permease
340	 33.70	0	339453..340271	-	272	125623222	-	llmg_0352	-	aldo/keto reductase family oxidoreductase
341	 33.33	0	340413..340760	+	115	125623223	-	llmg_0353	-	putative transcription regulator
342	 33.59	0	340804..341196	+	130	125623224	-	llmg_0354	-	putative glyoxylase
343	 40.31	+1	341375..342076	+	233	125623225	pmg	llmg_0355	-	phosphoglycerate mutase
344	 37.59	0	342254..342817	+	187	125623226	ahpC	llmg_0356	-	alkyl hydroperoxide reductase subunit C
345	 38.11	0	342883..344409	+	508	125623227	ahpF	llmg_0357	-	alkyl hydroperoxide reductase subunit F
346	 38.09	0	344604..346769	+	721	125623228	pbp2B	llmg_0358	-	penicillin-binding protein 2B
347	 40.03	+1	346899..347495	+	198	125623229	recR	llmg_0359	-	recombination protein recR
348	 36.38	0	347614..348663	+	349	125623230	ddl	llmg_0360	-	D-alanyl-alanine synthetase A
349	 35.15	0	348927..350249	+	440	125623231	murF	llmg_0361	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase
350	 37.45	0	350418..352070	+	550	125623232	dppA	llmg_0362	-	dipeptide-binding protein precursor
351	 38.82	0	354096..355007	+	303	125623233	dppB	llmg_0364	-	dipeptide transport system permease protein dppB
352	 39.15	0	355023..356054	+	343	125623234	dppC	llmg_0365	-	dipeptide transport system permease protein dppC
353	 40.29	+1	356057..357106	+	349	125623235	dppD	llmg_0366	-	dipeptide transport ATP-binding protein dppD
354	 38.87	0	357106..358044	+	312	125623236	dppF	llmg_0367	-	dipeptide transport ATP-binding protein dppF
355	 39.57	0	358445..360016	+	523	125623237	prfC	llmg_0368	-	peptide chain release factor 3
356	 41.06	+1	360338..361993	+	551	125623238	rheA	llmg_0369	-	ATP-dependent RNA helicase
357	 35.56	0	362113..362202	-	29	125623239	-	llmg_0370	-	hypothetical protein
358	 35.64	0	362691..363602	+	303	125623240	era	llmg_0371	-	GTP-binding protein Era
359	 38.92	0	363700..365292	+	530	125623241	asnB	llmg_0372	-	asparagine synthetase B
360	 35.65	0	365484..366302	+	272	125623242	fpg	llmg_0373	-	formamidopyrimidine-DNA glycosylase
361	 39.18	0	366455..367618	+	387	125623243	recA	llmg_0374	-	recombinase A
362	 34.78	0	367634..369016	-	460	125623244	-	llmg_0375	-	amino acid permease
363	 37.68	0	369088..370467	-	459	125623245	-	llmg_0376	-	amino acid permease
364	 29.40	-1	370614..370994	+	126	125623246	-	llmg_0377	-	hypothetical protein
365	 33.02	0	370969..371292	+	107	125623247	-	llmg_0378	-	hypothetical protein
366	 33.72	0	371516..372034	+	172	125623248	-	llmg_0379	-	hypothetical protein
367	 35.02	0	372098..372691	-	197	125623249	-	llmg_0380	-	hypothetical protein
368	 29.62	-1	372911..373717	+	268	125623250	-	llmg_0381	-	hypothetical protein
369	 37.12	0	373905..374564	+	219	125623251	-	llmg_0382	-	putative GTP pyrophosphokinase
370	 38.01	0	374551..375363	+	270	125623252	ppnK	llmg_0383	-	inorganic polyphosphate/ATP-NAD kinase
371	 36.51	0	375363..376244	+	293	125623253	rluE	llmg_0384	-	ribosomal large subunit pseudouridine synthase
372	 33.81	0	376287..377120	-	277	125623254	ppiA	llmg_0385	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
373	 39.26	0	377428..378861	+	477	125623255	lysQ	llmg_0386	-	amino-acid permease lysQ
374	 38.31	0	379021..379824	+	267	125623256	-	llmg_0387	-	hypothetical protein
375	 32.82	0	379821..380798	+	325	125623257	apbE	llmg_0388	-	thiamine biosynthesis lipoprotein apbE precursor
376	 39.80	+1	380881..382365	-	494	125623258	lysS	llmg_0389	-	lysyl-tRNA synthetase
377	 33.82	0	382562..383380	-	272	125623259	rlrG	llmg_0390	-	LysR family transcriptional regulator
378	 34.74	0	383544..384539	+	331	125623260	-	llmg_0391	-	hypothetical protein
379	 35.03	0	384757..385701	-	314	125623261	ldhB	llmg_0392	-	L-lactate dehydrogenase
380	 30.90	-1	386016..386837	-	273	125623262	rlrD	llmg_0393	-	LysR family transcriptional regulator
381	 32.92	0	386993..387967	+	324	125623263	-	llmg_0394	-	putative permease protein
382	 37.02	0	388323..389543	+	406	125623264	thiI	llmg_0395	-	thiamine biosynthesis protein thiI
383	 35.97	0	391309..391914	+	201	125623265	-	llmg_0397	-	NAD(P)H dehydrogenase (quinone)
384	 38.16	0	392012..392446	+	144	125623266	-	llmg_0398	-	hypothetical protein
385	 36.66	0	392501..394543	-	680	125623267	nha	llmg_0399	-	Na+/H+ antiporter
386	 31.00	-1	394634..395104	-	156	125623268	-	llmg_0400	-	hypothetical protein
387	 37.46	0	395229..396488	-	419	125623269	tyrS	llmg_0401	-	tyrosyl-tRNA synthetase
388	 36.82	0	396633..399071	+	812	125623270	pbp1B	llmg_0402	-	penicillin-binding protein 1B
389	 41.76	+1	399112..400179	-	355	125623271	pepA	llmg_0403	-	glutamyl-aminopeptidase
390	 34.39	0	400282..400566	+	94	125623272	-	llmg_0405	-	hypothetical protein
391	 34.59	0	400611..400928	+	105	125623273	trxH	llmg_0406	-	thioredoxin H-type
392	 40.67	+1	401034..401660	+	208	125623274	pheT	llmg_0407	-	phenylalanyl-tRNA synthetase beta chain
393	 36.39	0	401822..403162	+	446	125623275	noxE	llmg_0408	-	NADH oxidase
394	 37.18	0	403253..403642	+	129	125623276	ssbA	llmg_0409	-	single-strand DNA-binding protein
395	 39.30	0	403761..404045	+	94	125623277	groES	llmg_0410	-	co-chaperonin GroES
396	 39.90	+1	404132..405760	+	542	125623278	groEL	llmg_0411	-	chaperonin GroEL
397	 35.55	0	405810..406622	-	270	125623279	vicX	llmg_0412	-	ribonuclease Z
398	 34.03	0	406813..408240	-	475	125623280	kinC	llmg_0413	-	sensor histidine kinase
399	 38.89	0	408233..408934	-	233	125623281	llrC	llmg_0414	-	two-component system regulator
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.