IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
259	 38.78	0	255940..257721	+	593	125623141	-	llmg_0268	-	ABC transporter ATP binding protein
260	 37.60	0	257718..259616	+	632	125623142	-	llmg_0269	-	ABC transporter ATP-binding and permease protein
261	 37.09	0	259707..260372	+	221	125623143	-	llmg_0270	-	hypothetical protein
262	 38.24	0	260420..261439	-	339	125623144	-	llmg_0271	-	Gfo/Idh/MocA family oxidoreductase
263	 35.71	0	261423..261590	-	55	125623145	-	llmg_0272	-	hypothetical protein
264	 39.41	0	261789..262265	-	158	125623146	luxS	llmg_0273	-	S-ribosylhomocysteinase
265	 46.15	+2	262484..262717	+	77	125623147	-	llmg_0274	-	hypothetical protein
266	 39.72	+1	262808..262948	+	46	125623148	-	llmg_0275	-	hypothetical protein
267	 38.06	0	263015..263860	+	281	125623149	-	llmg_0276	-	aldo/keto reductase family oxidoreductase
268	 35.87	0	264100..264612	+	170	125623150	-	llmg_0277	-	amidase
269	 34.97	0	264727..265275	+	182	125623151	-	llmg_0278	-	hypothetical protein
270	 35.79	0	265272..265556	+	94	125623152	-	llmg_0279	-	hypothetical protein
271	 38.81	0	265605..266918	-	437	125623153	acmA	llmg_0280	-	N-acetylglucosaminidase
272	 38.41	0	267262..269505	+	747	125623154	-	llmg_0281	-	anaerobic ribonucleoside triphosphate reductase
273	 38.17	0	269508..270107	+	199	125623155	nrdG	llmg_0282	-	anaerobic ribonucleoside-triphosphate reductase activating protein
274	 35.29	0	270179..270688	-	169	125623156	-	llmg_0283	-	hypothetical protein
275	 33.77	0	270892..272277	+	461	125623157	-	llmg_0284	-	hypothetical protein
276	 39.39	0	273847..275316	-	489	125623158	-	llmg_0286	-	putative secreted protein
277	 39.93	+1	276119..276952	+	277	125623159	cbiO3	llmg_0287	-	cobalt transporter ATP-binding subunit
278	 39.79	+1	277084..277950	+	288	125623160	cbiO2	llmg_0288	-	cobalt transporter ATP-binding subunit
279	 37.45	0	277950..278750	+	266	125623161	cbiQ2	llmg_0289	-	putative cobalt ABC transporter permease protein
280	 40.36	+1	278772..279383	+	203	125623162	-	llmg_0290	-	hypothetical protein
281	 46.56	+2	279596..280366	+	256	125623163	dapD	llmg_0291	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
282	 38.20	0	280504..281634	+	376	125623164	hipO1	llmg_0292	-	putative hippurate hydrolase
283	 36.90	0	281791..282912	+	373	125623165	xynD	llmg_0293	-	endo-1,4-beta-xylanase D
284	 32.41	0	283549..283656	+	35	125623166	-	llmg_0294	-	hypothetical protein
285	 30.39	-1	283783..285207	+	474	125623167	-	llmg_0295	-	hypothetical protein
286	 41.99	+1	285418..286029	+	203	125623168	rpsD	llmg_0296	-	30S ribosomal protein S4
287	 37.25	0	286157..288298	+	713	125623169	tex	llmg_0297	-	transcription accessory protein TEX
288	 36.26	0	288431..288874	+	147	125623170	-	llmg_0298	-	hypothetical protein
289	 35.17	0	289175..290209	+	344	125623171	add	llmg_0299	-	adenosine deaminase
290	 36.99	0	290224..290661	-	145	125623172	-	llmg_0300	-	hypothetical protein
291	 34.69	0	290697..291065	-	122	125623173	-	llmg_0301	-	MerR family transcriptional regulator
292	 42.17	+1	291217..292902	-	561	125623174	-	llmg_0302	-	putative Zn-dependent hydrolase
293	 38.53	0	293096..293326	-	76	125623175	-	llmg_0304	-	hypothetical protein
294	 29.71	-1	293431..293568	+	45	125623176	-	llmg_0305	-	hypothetical protein
295	 37.74	0	293664..294389	+	241	125623177	-	llmg_0306	-	putative O-sialoglycoprotein endopeptidase
296	 39.47	0	294343..294912	+	189	125623178	-	llmg_0307	-	ribosomal-protein-alanine N-acetyltransferase
297	 31.63	-1	294909..295379	+	156	125623179	rimI2	llmg_0308	-	ribosomal-protein-alanine acetyltransferase
298	 40.64	+1	295382..296407	+	341	125623180	gcp	llmg_0309	-	O-sialoglycoprotein endopeptidase
299	 33.33	0	296422..296622	+	66	125623181	-	llmg_0310	-	hypothetical protein
300	 35.48	0	296970..297761	-	263	125623182	-	llmg_0311	-	hypothetical protein
301	 37.62	0	298060..299109	+	349	125623183	phnD	llmg_0312	-	phosphonate ABC transporter, phosphonate-binding protein phnD
302	 36.71	0	299225..299965	+	246	125623184	phnC	llmg_0313	-	phosphonates import ATP-binding protein phnC
303	 36.78	0	299966..300778	+	270	125623185	phnB	llmg_0314	-	phosphonate transport system permease protein phnB
304	 38.27	0	300798..301607	+	269	125623186	-	llmg_0315	-	phosphonate ABC transporter permease
305	 36.53	0	301611..303173	+	520	125623187	cpdC	llmg_0316	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
306	 30.83	-1	303317..303436	+	39	125623188	-	llmg_0317	-	hypothetical protein
307	 35.40	0	303499..303981	+	160	125623189	tpx	llmg_0318	-	thiol peroxidase
308	 37.07	0	304150..306690	+	846	125623190	pepN	llmg_0319	-	PepN protein
309	 41.23	+1	306738..307928	-	396	125623191	napC	llmg_0320	-	multidrug-efflux transporter protein
310	 30.59	-1	308410..308883	-	157	125623192	napB	llmg_0321	-	MarR family transcriptional regulator
311	 36.92	0	308880..310163	-	427	125623193	-	llmg_0322	-	cation transporter
312	 36.75	0	310439..310789	+	116	125623194	-	llmg_0323	-	PadR-like family transcriptional regulator
313	 38.51	0	311092..312831	+	579	125623195	lmrC	llmg_0324	-	multidrug resistance protein C
314	 37.44	0	312835..314829	+	664	125623196	lmrD	llmg_0325	-	multidrug resistance protein D
315	 39.51	0	315003..316265	+	420	125623197	murA1	llmg_0326	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
316	 36.07	0	316311..316529	+	72	125623198	-	llmg_0327	-	hypothetical protein
317	 32.10	-1	316793..317443	+	216	125623199	-	llmg_0328	-	hypothetical protein
318	 34.09	0	317445..319160	+	571	125623200	-	llmg_0329	-	ABC transporter ATP binding and permease protein
319	 30.39	-1	319313..320194	+	293	125623201	-	llmg_0330	-	putative permease protein
320	 31.93	-1	320425..320781	-	118	125623202	-	llmg_0331	-	hypothetical protein
321	 38.80	0	320805..321353	-	182	125623203	-	llmg_0332	-	hypothetical protein
322	 35.85	0	321464..321940	-	158	125623204	-	llmg_0333	-	hypothetical protein
323	 39.89	+1	322003..322551	-	182	125623205	-	llmg_0334	-	hypothetical protein
324	 33.57	0	323286..324146	+	286	125623206	plpA	llmg_0335	-	D-methionine-binding lipoprotein plpA precursor
325	 34.84	0	324291..325151	+	286	125623207	plpB	llmg_0336	-	D-methionine-binding lipoprotein plpB precursor
326	 36.00	0	325297..326160	+	287	125623208	plpC	llmg_0338	-	D-methionine-binding lipoprotein plpC precursor
327	 40.21	+1	326229..326999	+	256	125623209	dar	llmg_0339	-	acetoin(diacetyl)reductase
328	 32.29	-1	327015..327875	+	286	125623210	plpD	llmg_0340	-	D-methionine-binding lipoprotein plpD precursor
329	 35.05	0	327999..329105	+	368	125623211	-	llmg_0341	-	amino acid ABC transporter ATP binding protein
330	 43.25	+2	329105..329800	+	231	125623212	-	llmg_0342	-	amino acid ABC transporter permease protein
331	 37.89	0	329843..330391	+	182	125623213	-	llmg_0343	-	hypothetical protein
332	 35.10	0	330510..332207	+	565	125623214	cbiO	llmg_0344	-	putative cobalt ABC transporter ATP-binding protein
333	 34.67	0	332200..333021	+	273	125623215	cbiQ	llmg_0345	-	putative cobalt ABC transporter permease protein
334	 37.18	0	333550..334329	+	259	125623216	fhuC	llmg_0346	-	ferrichrome ABC transporter fhuC
335	 38.49	0	334322..335272	+	316	125623217	fhuB	llmg_0347	-	ferrichrome ABC transporter permease protein
336	 36.00	0	335273..336211	+	312	125623218	fhuG	llmg_0348	-	ferrichrome ABC transporter permease protein
337	 35.99	0	336295..337236	+	313	125623219	fhuD	llmg_0349	-	ferrichrome ABC transporter substrate binding protein
338	 35.32	0	337298..338203	+	301	125623220	fhuR	llmg_0350	-	HTH-type transcriptional regulator fhuR
339	 38.01	0	338265..339440	-	391	125623221	araJ	llmg_0351	-	putative arabinose efflux permease
340	 33.70	0	339453..340271	-	272	125623222	-	llmg_0352	-	aldo/keto reductase family oxidoreductase
341	 33.33	0	340413..340760	+	115	125623223	-	llmg_0353	-	putative transcription regulator
342	 33.59	0	340804..341196	+	130	125623224	-	llmg_0354	-	putative glyoxylase
343	 40.31	+1	341375..342076	+	233	125623225	pmg	llmg_0355	-	phosphoglycerate mutase
344	 37.59	0	342254..342817	+	187	125623226	ahpC	llmg_0356	-	alkyl hydroperoxide reductase subunit C
345	 38.11	0	342883..344409	+	508	125623227	ahpF	llmg_0357	-	alkyl hydroperoxide reductase subunit F
346	 38.09	0	344604..346769	+	721	125623228	pbp2B	llmg_0358	-	penicillin-binding protein 2B
347	 40.03	+1	346899..347495	+	198	125623229	recR	llmg_0359	-	recombination protein recR
348	 36.38	0	347614..348663	+	349	125623230	ddl	llmg_0360	-	D-alanyl-alanine synthetase A
349	 35.15	0	348927..350249	+	440	125623231	murF	llmg_0361	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase
350	 37.45	0	350418..352070	+	550	125623232	dppA	llmg_0362	-	dipeptide-binding protein precursor
351	 38.82	0	354096..355007	+	303	125623233	dppB	llmg_0364	-	dipeptide transport system permease protein dppB
352	 39.15	0	355023..356054	+	343	125623234	dppC	llmg_0365	-	dipeptide transport system permease protein dppC
353	 40.29	+1	356057..357106	+	349	125623235	dppD	llmg_0366	-	dipeptide transport ATP-binding protein dppD
354	 38.87	0	357106..358044	+	312	125623236	dppF	llmg_0367	-	dipeptide transport ATP-binding protein dppF
355	 39.57	0	358445..360016	+	523	125623237	prfC	llmg_0368	-	peptide chain release factor 3
356	 41.06	+1	360338..361993	+	551	125623238	rheA	llmg_0369	-	ATP-dependent RNA helicase
357	 35.56	0	362113..362202	-	29	125623239	-	llmg_0370	-	hypothetical protein
358	 35.64	0	362691..363602	+	303	125623240	era	llmg_0371	-	GTP-binding protein Era
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.