IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
206	 36.23	0	199519..200727	+	402	125623088	rgpA	llmg_0211	-	rhamnosyltransferase RgpA
207	 35.77	0	200717..201658	+	313	125623089	rgpB	llmg_0212	-	rhamnosyltransferase RgpB
208	 35.93	0	201655..202464	+	269	125623090	rgpC	llmg_0213	-	capsule polysaccharide export inner-membrane protein RgpC
209	 36.01	0	202479..203672	+	397	125623091	rgpD	llmg_0214	-	polysaccharide ABC transporter ATP-binding protein
210	 33.26	0	203650..205041	+	463	125623092	-	llmg_0215	-	hypothetical protein
211	 31.66	-1	205049..206005	+	318	125623093	rgpE	llmg_0216	-	glycosyltransferase RgpE
212	 32.31	-1	205995..207761	+	588	125623094	rgpF	llmg_0217	-	alpha-L-Rha alpha-1,2-L-rhamnosyltransferase RgpF
213	 34.55	0	207843..208580	+	245	125623095	-	llmg_0218	-	putative glycosyl transferase
214	 30.23	-1	208580..208933	+	117	125623096	-	llmg_0219	-	hypothetical protein
215	 28.68	-2	208969..209763	+	264	125623097	-	llmg_0220	-	putative glycosyl transferase
216	 29.71	-1	209769..210761	+	330	125623098	-	llmg_0221	-	glycosyl transferase
217	 29.73	-1	210754..211752	+	332	125623099	wefC	llmg_0222	-	hypothetical protein
218	 29.08	-1	211819..212853	+	344	125623100	-	llmg_0223	-	hypothetical protein
219	 34.66	0	212853..213983	+	376	125623101	glf1	llmg_0224	-	Glf1 protein
220	 32.56	0	213980..215398	+	472	125623102	rfbX	llmg_0225	-	putative O-antigen transporter
221	 34.83	0	215427..217226	+	599	125623103	-	llmg_0226	-	surface protein
222	 30.78	-1	217228..218283	+	351	125623104	-	llmg_0227	-	hypothetical protein
223	 34.40	0	218280..218654	+	124	125623105	-	llmg_0228	-	hypothetical protein
224	 39.88	+1	218798..220096	-	432	125623106	-	llmg_0229	-	hypothetical protein
225	 39.74	+1	220476..221957	+	493	125623107	guaB	llmg_0230	-	inositol-5-monophosphate dehydrogenase
226	 40.23	+1	222183..223328	+	381	125623108	-	llmg_0231	-	GTP-binding protein YqeH
227	 37.50	0	223423..223926	+	167	125623109	-	llmg_0232	-	hypothetical protein
228	 38.47	0	224009..225253	+	414	125623110	hflX	llmg_0233	-	GTP-binding protein hflX
229	 49.85	+2	225382..225708	-	108	125623111	-	llmg_0234	-	putative secreted protein
230	 35.87	0	225877..226191	+	104	125623112	-	llmg_0235	-	hypothetical protein
231	 40.17	+1	226266..226865	+	199	125623113	nadD1	llmg_0236	-	nicotinate-nucleotide adenylyltransferase
232	 38.41	0	226858..227448	+	196	125623114	-	llmg_0237	-	putative hydrolase
233	 36.34	0	227495..227926	+	143	125623115	-	llmg_0238	-	hypothetical protein
234	 39.17	0	228093..228452	+	119	125623116	-	llmg_0239	-	hypothetical protein
235	 38.37	0	228552..229286	+	244	125623117	-	llmg_0240	-	hypothetical protein
236	 36.49	0	229336..230475	+	379	125623118	-	llmg_0241	-	hypothetical protein
237	 39.33	0	230628..231344	+	238	125623119	-	llmg_0242	-	hypothetical protein
238	 40.91	+1	232047..232706	+	219	125623120	ung	llmg_0244	-	uracil-DNA glycosylase
239	 44.63	+2	232743..233654	-	303	125623121	-	llmg_0245	-	putative zinc-binding dehydrogenase
240	 39.36	0	233677..234555	-	292	125623122	-	llmg_0246	-	hypothetical protein
241	 41.31	+1	234577..235416	-	279	125623123	-	llmg_0247	-	putative UDP-glucose 4-epimerase
242	 36.81	0	235620..236165	+	181	125623124	-	llmg_0248	-	TetR family transcriptional regulator
243	 40.45	+1	236277..237737	-	486	125623125	-	llmg_0249	-	putative transporter
244	 37.37	0	237923..238294	+	123	125623126	rmeC	llmg_0250	-	MerR family transcriptional regulator
245	 39.55	0	238375..238551	+	58	125623127	rpsU	llmg_0251	-	30S ribosomal protein S21
246	 32.47	0	238659..239471	+	270	125623128	-	llmg_0252	-	hypothetical protein
247	 41.69	+1	239673..240869	+	398	125623129	pgk	llmg_0253	-	phosphoglycerate kinase
248	 35.41	0	240927..241601	+	224	125623130	hadL	llmg_0254	-	cryptic haloacid dehalogenase 1
249	 37.49	0	241721..242707	+	328	125623131	dhaK	llmg_0255	-	dihydroxyacetone kinase DhaK
250	 38.17	0	244314..244892	+	192	125623132	dhaM	llmg_0257	-	dihydroxyacetone kinase DhaM
251	 36.02	0	244889..245260	+	123	125623133	-	llmg_0258	-	hypothetical protein
252	 39.26	0	245939..247321	-	460	125623134	pepDA	llmg_0260	-	PepDA protein
253	 36.40	0	248309..249451	+	380	125623135	-	llmg_0262	-	ABC transporter permease protein
254	 37.52	0	249574..250743	+	389	125623136	-	llmg_0263	-	putative methyltransferase
255	 35.99	0	250908..252830	+	640	125623137	fbp	llmg_0264	-	fructose-bisphosphatase
256	 39.14	0	253062..254336	-	424	125623138	-	llmg_0265	-	putative flavoprotein
257	 37.91	0	254374..255204	+	276	125623139	-	llmg_0266	-	putative sugar kinase
258	 45.17	+2	255275..255688	+	137	125623140	-	llmg_0267	-	hypothetical protein
259	 38.78	0	255940..257721	+	593	125623141	-	llmg_0268	-	ABC transporter ATP binding protein
260	 37.60	0	257718..259616	+	632	125623142	-	llmg_0269	-	ABC transporter ATP-binding and permease protein
261	 37.09	0	259707..260372	+	221	125623143	-	llmg_0270	-	hypothetical protein
262	 38.24	0	260420..261439	-	339	125623144	-	llmg_0271	-	Gfo/Idh/MocA family oxidoreductase
263	 35.71	0	261423..261590	-	55	125623145	-	llmg_0272	-	hypothetical protein
264	 39.41	0	261789..262265	-	158	125623146	luxS	llmg_0273	-	S-ribosylhomocysteinase
265	 46.15	+2	262484..262717	+	77	125623147	-	llmg_0274	-	hypothetical protein
266	 39.72	+1	262808..262948	+	46	125623148	-	llmg_0275	-	hypothetical protein
267	 38.06	0	263015..263860	+	281	125623149	-	llmg_0276	-	aldo/keto reductase family oxidoreductase
268	 35.87	0	264100..264612	+	170	125623150	-	llmg_0277	-	amidase
269	 34.97	0	264727..265275	+	182	125623151	-	llmg_0278	-	hypothetical protein
270	 35.79	0	265272..265556	+	94	125623152	-	llmg_0279	-	hypothetical protein
271	 38.81	0	265605..266918	-	437	125623153	acmA	llmg_0280	-	N-acetylglucosaminidase
272	 38.41	0	267262..269505	+	747	125623154	-	llmg_0281	-	anaerobic ribonucleoside triphosphate reductase
273	 38.17	0	269508..270107	+	199	125623155	nrdG	llmg_0282	-	anaerobic ribonucleoside-triphosphate reductase activating protein
274	 35.29	0	270179..270688	-	169	125623156	-	llmg_0283	-	hypothetical protein
275	 33.77	0	270892..272277	+	461	125623157	-	llmg_0284	-	hypothetical protein
276	 39.39	0	273847..275316	-	489	125623158	-	llmg_0286	-	putative secreted protein
277	 39.93	+1	276119..276952	+	277	125623159	cbiO3	llmg_0287	-	cobalt transporter ATP-binding subunit
278	 39.79	+1	277084..277950	+	288	125623160	cbiO2	llmg_0288	-	cobalt transporter ATP-binding subunit
279	 37.45	0	277950..278750	+	266	125623161	cbiQ2	llmg_0289	-	putative cobalt ABC transporter permease protein
280	 40.36	+1	278772..279383	+	203	125623162	-	llmg_0290	-	hypothetical protein
281	 46.56	+2	279596..280366	+	256	125623163	dapD	llmg_0291	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
282	 38.20	0	280504..281634	+	376	125623164	hipO1	llmg_0292	-	putative hippurate hydrolase
283	 36.90	0	281791..282912	+	373	125623165	xynD	llmg_0293	-	endo-1,4-beta-xylanase D
284	 32.41	0	283549..283656	+	35	125623166	-	llmg_0294	-	hypothetical protein
285	 30.39	-1	283783..285207	+	474	125623167	-	llmg_0295	-	hypothetical protein
286	 41.99	+1	285418..286029	+	203	125623168	rpsD	llmg_0296	-	30S ribosomal protein S4
287	 37.25	0	286157..288298	+	713	125623169	tex	llmg_0297	-	transcription accessory protein TEX
288	 36.26	0	288431..288874	+	147	125623170	-	llmg_0298	-	hypothetical protein
289	 35.17	0	289175..290209	+	344	125623171	add	llmg_0299	-	adenosine deaminase
290	 36.99	0	290224..290661	-	145	125623172	-	llmg_0300	-	hypothetical protein
291	 34.69	0	290697..291065	-	122	125623173	-	llmg_0301	-	MerR family transcriptional regulator
292	 42.17	+1	291217..292902	-	561	125623174	-	llmg_0302	-	putative Zn-dependent hydrolase
293	 38.53	0	293096..293326	-	76	125623175	-	llmg_0304	-	hypothetical protein
294	 29.71	-1	293431..293568	+	45	125623176	-	llmg_0305	-	hypothetical protein
295	 37.74	0	293664..294389	+	241	125623177	-	llmg_0306	-	putative O-sialoglycoprotein endopeptidase
296	 39.47	0	294343..294912	+	189	125623178	-	llmg_0307	-	ribosomal-protein-alanine N-acetyltransferase
297	 31.63	-1	294909..295379	+	156	125623179	rimI2	llmg_0308	-	ribosomal-protein-alanine acetyltransferase
298	 40.64	+1	295382..296407	+	341	125623180	gcp	llmg_0309	-	O-sialoglycoprotein endopeptidase
299	 33.33	0	296422..296622	+	66	125623181	-	llmg_0310	-	hypothetical protein
300	 35.48	0	296970..297761	-	263	125623182	-	llmg_0311	-	hypothetical protein
301	 37.62	0	298060..299109	+	349	125623183	phnD	llmg_0312	-	phosphonate ABC transporter, phosphonate-binding protein phnD
302	 36.71	0	299225..299965	+	246	125623184	phnC	llmg_0313	-	phosphonates import ATP-binding protein phnC
303	 36.78	0	299966..300778	+	270	125623185	phnB	llmg_0314	-	phosphonate transport system permease protein phnB
304	 38.27	0	300798..301607	+	269	125623186	-	llmg_0315	-	phosphonate ABC transporter permease
305	 36.53	0	301611..303173	+	520	125623187	cpdC	llmg_0316	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.