IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2308	 40.45	+1	2383065..2385776	+	903	125625190	adhE	llmg_2432	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
2309	 29.63	-1	2386051..2386158	-	35	125625191	-	llmg_2433	-	hypothetical protein
2310	 27.31	-2	2386240..2386737	-	165	125625192	-	llmg_2434	-	hypothetical protein
2311	 34.29	0	2386724..2386933	-	69	125625193	-	llmg_2435	-	hypothetical protein
2312	 30.31	-1	2386930..2387757	-	275	125625194	-	llmg_2436	-	hypothetical protein
2313	 30.19	-1	2389975..2390832	-	285	125625195	-	llmg_2438	-	HTH-type transcriptional regulator
2314	 27.26	-2	2390884..2392020	-	378	125625196	-	llmg_2439	-	hypothetical protein
2315	 27.80	-2	2392017..2393336	-	439	125625197	-	llmg_2440	-	hypothetical protein
2316	 35.09	0	2393404..2393517	-	37	125625198	-	llmg_2441	-	hypothetical protein
2317	 38.08	0	2393837..2394868	-	343	125625199	-	llmg_2442	-	hypothetical protein
2318	 34.73	0	2394852..2395352	-	166	125625200	kdtB	llmg_2443	-	pantetheine-phosphate adenylyltransferase
2319	 36.11	0	2395400..2395939	-	179	125625201	-	llmg_2444	-	hypothetical protein
2320	 38.51	0	2396112..2397329	-	405	125625202	-	llmg_2445	-	multidrug resistance protein
2321	 34.15	0	2397414..2398640	-	408	125625203	lmrP	llmg_2446	-	multidrug resistance protein
2322	 33.97	0	2399342..2400448	+	368	125625204	-	llmg_2447	-	hypothetical protein
2323	 39.64	+1	2400544..2401890	-	448	125625205	pgi	llmg_2448	-	glucose-6-phosphate isomerase
2324	 35.03	0	2402210..2402740	+	176	125625206	-	llmg_2449	-	hypothetical protein
2325	 35.90	0	2402774..2403514	-	246	125625207	-	llmg_2450	-	hypothetical protein
2326	 32.96	0	2403560..2404363	-	267	125625208	-	llmg_2451	-	hypothetical protein
2327	 39.95	+1	2404433..2405278	-	281	125625209	-	llmg_2452	-	hypothetical protein
2328	 43.24	+2	2405452..2405784	+	110	125625210	-	llmg_2453	-	putative transcriptional regulator
2329	 32.42	0	2405901..2406230	+	109	125625211	-	llmg_2454	-	hypothetical protein
2330	 39.42	0	2406273..2408915	-	880	125625212	valS	llmg_2455	-	valyl-tRNA synthetase
2331	 29.86	-1	2408951..2409439	-	162	125625213	-	llmg_2456	-	hypothetical protein
2332	 41.67	+1	2409436..2409555	-	39	125625214	-	llmg_2457	-	hypothetical protein
2333	 35.62	0	2409746..2410402	-	218	125625215	-	llmg_2458	-	putative fibronectin-binding protein
2334	 33.33	0	2410880..2411128	-	82	125625216	-	llmg_2459	-	hypothetical protein
2335	 36.81	0	2411201..2411545	-	114	125625217	-	llmg_2460	-	hypothetical protein
2336	 35.25	0	2411538..2412059	-	173	125625218	-	llmg_2461	-	hypothetical protein
2337	 36.67	0	2412260..2412979	-	239	125625219	-	llmg_2463	-	hypothetical protein
2338	 37.87	0	2413060..2414601	-	513	125625220	-	llmg_2464	-	putative RNA methyltransferase
2339	 37.44	0	2414829..2417606	-	925	125625221	-	llmg_2465	-	hypothetical protein
2340	 33.95	0	2417964..2418773	+	269	125625222	recX	llmg_2466	-	recombination regulator RecX
2341	 40.18	+1	2424123..2425538	-	471	125625223	gntP	llmg_2467	-	gluconate transport protein
2342	 39.76	+1	2425675..2427183	-	502	125625224	gntK	llmg_2468	-	gluconate kinase
2343	 38.63	0	2427450..2428355	-	301	125625225	gntZ	llmg_2469	-	6-phosphogluconate dehydrogenase-like protein
2344	 37.10	0	2428725..2429573	+	282	125625226	gntR	llmg_2470	-	RpiR family transcriptional regulator
2345	 38.51	0	2429612..2429920	+	102	125625227	-	llmg_2471	-	hypothetical protein
2346	 36.01	0	2429992..2430777	-	261	125625228	-	llmg_2472	-	hypothetical protein
2347	 43.50	+2	2430908..2431153	-	81	125625229	rpsR	llmg_2473	-	30S ribosomal protein S18
2348	 41.72	+1	2431325..2431825	-	166	125625230	ssbB	llmg_2474	-	single-strand DNA-binding protein
2349	 38.44	0	2431855..2432148	-	97	125625231	rpsF	llmg_2475	-	30S ribosomal protein S6
2350	 37.66	0	2432342..2433196	-	284	125625232	bacA	llmg_2476	-	undecaprenyl pyrophosphate phosphatase
2351	 40.01	+1	2433658..2435184	+	508	125625233	-	llmg_2477	-	lysine specific permease
2352	 39.35	0	2435218..2436879	-	553	125625234	dnaX	llmg_2478	-	DNA polymerase III subunits gamma and tau
2353	 35.83	0	2436925..2437566	-	213	125625235	-	llmg_2479	-	hypothetical protein
2354	 34.97	0	2437598..2438086	-	162	125625236	-	llmg_2480	-	hypothetical protein
2355	 29.30	-1	2438170..2438442	+	90	125625237	-	llmg_2481	-	hypothetical protein
2356	 34.67	0	2438477..2438926	-	149	125625238	-	llmg_2482	-	hypothetical protein
2357	 34.33	0	2439144..2439344	+	66	125625239	-	llmg_2483	-	hypothetical protein
2358	 39.82	+1	2439405..2440745	-	446	125625240	glnA	llmg_2484	-	GlnA protein
2359	 42.62	+1	2440807..2441172	-	121	125625241	glnR	llmg_2485	-	glutamine synthetase repressor
2360	 34.93	0	2441273..2441710	-	145	125625242	ptpL	llmg_2486	-	protein-tyrosine phosphatase
2361	 39.92	+1	2441855..2442856	-	333	125625243	ruvB	llmg_2487	-	Holliday junction DNA helicase B
2362	 37.37	0	2443004..2443597	-	197	125625244	ruvA	llmg_2488	-	Holliday junction DNA helicase motor protein
2363	 37.49	0	2443649..2445619	-	656	125625245	mutL	llmg_2489	-	DNA mismatch repair protein
2364	 37.21	0	2445749..2446444	-	231	125625246	-	llmg_2490	-	hypothetical protein
2365	 38.57	0	2446554..2449076	-	840	125625247	mutS	llmg_2491	-	DNA mismatch repair protein
2366	 31.32	-1	2449192..2449539	-	115	125625248	-	llmg_2492	-	hypothetical protein
2367	 39.12	0	2449740..2450915	+	391	125625249	tnp905	llmg_2493	-	transposase for insertion sequence element IS905N
2368	 40.59	+1	2451026..2451907	-	293	125625250	ywjF	llmg_2494	-	putative 3-hydroxyisobutyrate dehydrogenase
2369	 39.56	0	2451950..2452270	-	106	125625251	-	llmg_2495	-	hypothetical protein
2370	 34.13	0	2452387..2452764	-	125	125625252	-	llmg_2496	-	hypothetical protein
2371	 38.26	0	2452764..2453615	-	283	125625253	-	llmg_2497	-	hypothetical protein
2372	 37.78	0	2453799..2453978	+	59	125625254	-	llmg_2498	-	hypothetical protein
2373	 39.35	0	2454098..2455609	+	503	125625255	-	llmg_2499	-	glucose-6-phosphate 1-dehydrogenase
2374	 41.10	+1	2455805..2456332	-	175	125625256	-	llmg_2500	-	hypothetical protein
2375	 41.40	+1	2456461..2457600	-	379	125625257	dnaJ	llmg_2502	-	chaperone protein dnaJ
2376	 34.72	0	2458449..2459171	-	240	125625258	racD	llmg_2504	-	RacD protein
2377	 34.80	0	2459203..2460429	-	408	125625259	-	llmg_2505	-	hypothetical protein
2378	 35.73	0	2460441..2462318	-	625	125625260	asnH	llmg_2506	-	asparagine synthase
2379	 39.54	0	2462440..2463825	-	461	125625261	usp45	llmg_2507	-	secreted 45 kDa protein precursor
2380	 33.33	0	2463929..2464456	-	175	125625262	-	llmg_2508	-	cell shape determining protein mreD
2381	 36.30	0	2464535..2465410	-	291	125625263	mreC	llmg_2509	-	cell shape determining protein mreC
2382	 37.87	0	2465701..2466141	+	146	125625264	mutT	llmg_2510	-	putative mutator protein
2383	 36.15	0	2466170..2466844	-	224	125625265	rpiA	llmg_2511	-	ribose-5-phosphate isomerase A
2384	 31.14	-1	2466928..2467611	-	227	125625266	rcfB	llmg_2512	-	transcriptional regulator
2385	 39.72	+1	2467698..2468918	-	406	125625267	-	llmg_2513	-	putative transport protein
2386	 36.53	0	2468981..2469418	-	145	125625268	-	llmg_2514	-	hypothetical protein
2387	 35.78	0	2469438..2469641	-	67	125625269	-	llmg_2515	-	hypothetical protein
2388	 39.18	0	2469872..2474182	-	1436	125625270	-	llmg_2516	-	hypothetical protein
2389	 33.17	0	2474592..2475206	+	204	125625271	-	llmg_2517	-	hypothetical protein
2390	 36.68	0	2475290..2476276	-	328	125625272	-	llmg_2518	-	ribosomal small subunit pseudouridine synthase A
2391	 34.17	0	2476285..2476998	-	237	125625273	-	llmg_2520	-	hypothetical protein
2392	 38.96	0	2477220..2478587	+	455	125625274	trmE	llmg_2521	-	tRNA modification GTPase TrmE
2393	 34.69	0	2478636..2479373	-	245	125625275	-	llmg_2522	-	hypothetical protein
2394	 39.03	0	2479373..2481373	-	666	125625276	recG	llmg_2523	-	ATP-dependent DNA helicase RecG
2395	 34.70	0	2481512..2481877	-	121	125625277	phnA	llmg_2524	-	putative alkylphosphonate uptake protein
2396	 36.47	0	2481927..2483105	-	392	125625278	ps601	llmg_2525	-	putative integrase
2397	 29.35	-1	2483633..2484235	-	200	125625279	ps602	llmg_2526	-	hypothetical protein
2398	 37.81	0	2484619..2485311	+	230	125625280	ps603	llmg_2527	-	hypothetical protein
2399	 34.83	0	2485565..2486098	+	177	125625281	ps604	llmg_2528	-	hypothetical protein
2400	 32.27	-1	2486091..2486372	+	93	125625282	ps605	llmg_2529	-	hypothetical protein
2401	 40.00	+1	2486415..2486654	+	79	125625283	ps606	llmg_2530	-	hypothetical protein
2402	 38.43	0	2486651..2486905	+	84	125625284	-	llmg_2531	-	hypothetical protein
2403	 38.48	0	2486902..2487231	+	109	125625285	ps608	llmg_2532	-	hypothetical protein
2404	 44.78	+2	2487340..2488134	+	264	125625286	ps609	llmg_2533	-	hypothetical protein
2405	 39.35	0	2488145..2489773	+	542	125625287	ps610	llmg_2534	-	hypothetical protein
2406	 40.15	+1	2490001..2490543	+	180	125625288	ps611	llmg_2535	-	hypothetical protein
2407	 37.62	0	2490816..2491118	+	100	125625289	ps612	llmg_2536	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.