IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2250	 37.58	0	2320942..2321247	-	101	125625132	rplX	llmg_2372	-	50S ribosomal protein L24
2251	 45.53	+2	2321381..2321749	-	122	125625133	rplN	llmg_2373	-	50S ribosomal protein L14
2252	 37.93	0	2321772..2322032	-	86	125625134	rpsQ	llmg_2374	-	30S ribosomal protein S17
2253	 37.62	0	2322053..2322262	-	69	125625135	rpmC	llmg_2375	-	50S ribosomal protein L29
2254	 44.44	+2	2322262..2322675	-	137	125625136	rplP	llmg_2376	-	50S ribosomal protein L16
2255	 42.20	+1	2322679..2323332	-	217	125625137	rpsC	llmg_2377	-	30S ribosomal protein S3
2256	 39.66	+1	2323345..2323692	-	115	125625138	rplV	llmg_2378	-	50S ribosomal protein L22
2257	 42.29	+1	2323708..2323986	-	92	125625139	rpsS	llmg_2379	-	30S ribosomal protein S19
2258	 44.52	+2	2324146..2324976	-	276	125625140	rplB	llmg_2380	-	50S ribosomal protein L2
2259	 35.37	0	2324992..2325285	-	97	125625141	rplW	llmg_2381	-	50S ribosomal protein L23
2260	 42.26	+1	2325285..2325911	-	208	125625142	rplD	llmg_2382	-	50S ribosomal protein L4
2261	 42.31	+1	2325937..2326560	-	207	125625143	rplC	llmg_2383	-	50S ribosomal protein L3
2262	 40.78	+1	2326579..2326887	-	102	125625144	rpsJ	llmg_2384	-	30S ribosomal protein S10
2263	 34.15	0	2327222..2327587	+	121	125625145	mscL	llmg_2385	-	large-conductance mechanosensitive channel
2264	 35.66	0	2327625..2328914	-	429	125625146	-	llmg_2386	-	hypothetical protein
2265	 35.48	0	2328911..2330401	-	496	125625147	thrC	llmg_2387	-	threonine synthase
2266	 38.89	0	2330500..2331057	-	185	125625148	nusG	llmg_2388	-	transcription antitermination protein NusG
2267	 31.28	-1	2331263..2331457	-	64	125625149	secE	llmg_2389	-	preprotein translocase subunit SecE
2268	 37.33	0	2331569..2331718	-	49	125625150	rpmG	llmg_2390	-	50S ribosomal protein L33
2269	 37.90	0	2331759..2333576	-	605	125625151	-	llmg_2391	-	hypothetical protein
2270	 37.72	0	2333678..2335909	-	743	125625152	pbp2A	llmg_2392	-	penicillin-binding protein 2a
2271	 30.50	-1	2336296..2336931	-	211	125625153	-	llmg_2393	-	hypothetical protein
2272	 26.62	-2	2336949..2337380	-	143	125625154	-	llmg_2394	-	hypothetical protein
2273	 34.77	0	2337495..2337911	-	138	125625155	-	llmg_2395	-	hypothetical protein
2274	 33.91	0	2338067..2338939	+	290	125625156	rluA	llmg_2396	-	ribosomal large subunit pseudouridine synthase
2275	 37.41	0	2340471..2341280	-	269	125625157	zitP	llmg_2398	-	zinc ABC transporter permease protein
2276	 38.75	0	2341273..2342010	-	245	125625158	zitQ	llmg_2399	-	zinc ABC transporter ATP binding protein
2277	 34.52	0	2342189..2343031	-	280	125625159	zitS	llmg_2400	-	zinc ABC transporter substrate binding protein
2278	 39.73	+1	2343028..2343465	-	145	125625160	zitR	llmg_2401	-	transcriptional regulator of the zit operon
2279	 32.33	-1	2343546..2343845	-	99	125625161	-	llmg_2402	-	hypothetical protein
2280	 34.45	0	2343869..2344315	-	148	125625162	-	llmg_2403	-	hypothetical protein
2281	 33.07	0	2344278..2344664	-	128	125625163	-	llmg_2404	-	hypothetical protein
2282	 30.63	-1	2344546..2344989	-	147	125625164	comGD	llmg_2405	-	putative competence protein ComGD
2283	 32.28	-1	2344937..2345314	-	125	125625165	comGC	llmg_2406	-	putative competence protein ComGC
2284	 32.42	0	2345332..2346420	-	362	125625166	comGB	llmg_2407	-	putative competence protein ComGB
2285	 37.10	0	2346257..2347237	-	326	125625167	comGA	llmg_2408	-	putative competence protein ComGA
2286	 39.98	+1	2347351..2352258	-	1635	125625168	polC	llmg_2409	-	DNA polymerase III PolC
2287	 31.66	-1	2352432..2352968	-	178	125625169	-	llmg_2410	-	hypothetical protein
2288	 37.55	0	2354322..2356172	-	616	125625170	proS	llmg_2412	-	prolyl-tRNA synthetase
2289	 38.85	0	2356242..2357528	-	428	125625171	-	llmg_2413	-	putative zinc metalloprotease
2290	 38.18	0	2357547..2358350	-	267	125625172	cdsA	llmg_2414	-	phosphatidate cytidylyltransferase
2291	 39.05	0	2358350..2359084	-	244	125625173	uppS	llmg_2415	-	UPP synthetase
2292	 35.74	0	2359435..2359767	-	110	125625174	yajC	llmg_2416	-	hypothetical protein
2293	 33.62	0	2359862..2360560	-	232	125625175	-	llmg_2417	-	hypothetical protein
2294	 36.67	0	2360578..2361057	-	159	125625176	-	llmg_2418	-	hypothetical protein
2295	 39.95	+1	2361433..2362656	+	407	125625177	htrA	llmg_2419	-	housekeeping protease
2296	 37.74	0	2362776..2363774	+	332	125625178	-	llmg_2420	-	hypothetical protein
2297	 36.76	0	2363920..2365260	+	446	125625179	-	llmg_2421	-	hypothetical protein
2298	 34.67	0	2365368..2365592	+	74	125625180	-	llmg_2422	-	hypothetical protein
2299	 33.33	0	2365736..2366740	+	334	125625181	-	llmg_2423	-	hypothetical protein
2300	 38.65	0	2366797..2367549	-	250	125625182	-	llmg_2424	-	hypothetical protein
2301	 37.62	0	2367757..2370390	-	877	125625183	polA	llmg_2425	-	DNA polymerase I
2302	 33.20	0	2370652..2371407	+	251	125625184	-	llmg_2426	-	hypothetical protein
2303	 36.18	0	2376782..2377273	-	163	125625185	comX	llmg_2427	-	competence regulator ComX
2304	 36.11	0	2377538..2379268	-	576	125625186	ezrA	llmg_2428	-	septation ring formation regulator EzrA
2305	 39.55	0	2379473..2380501	-	342	125625187	tsf	llmg_2429	-	elongation factor Ts
2306	 40.23	+1	2380623..2381390	-	255	125625188	rpsB	llmg_2430	-	30S ribosomal protein S2
2307	 38.60	0	2381785..2382810	+	341	125625189	-	llmg_2431	-	hypothetical protein
2308	 40.45	+1	2383065..2385776	+	903	125625190	adhE	llmg_2432	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
2309	 29.63	-1	2386051..2386158	-	35	125625191	-	llmg_2433	-	hypothetical protein
2310	 27.31	-2	2386240..2386737	-	165	125625192	-	llmg_2434	-	hypothetical protein
2311	 34.29	0	2386724..2386933	-	69	125625193	-	llmg_2435	-	hypothetical protein
2312	 30.31	-1	2386930..2387757	-	275	125625194	-	llmg_2436	-	hypothetical protein
2313	 30.19	-1	2389975..2390832	-	285	125625195	-	llmg_2438	-	HTH-type transcriptional regulator
2314	 27.26	-2	2390884..2392020	-	378	125625196	-	llmg_2439	-	hypothetical protein
2315	 27.80	-2	2392017..2393336	-	439	125625197	-	llmg_2440	-	hypothetical protein
2316	 35.09	0	2393404..2393517	-	37	125625198	-	llmg_2441	-	hypothetical protein
2317	 38.08	0	2393837..2394868	-	343	125625199	-	llmg_2442	-	hypothetical protein
2318	 34.73	0	2394852..2395352	-	166	125625200	kdtB	llmg_2443	-	pantetheine-phosphate adenylyltransferase
2319	 36.11	0	2395400..2395939	-	179	125625201	-	llmg_2444	-	hypothetical protein
2320	 38.51	0	2396112..2397329	-	405	125625202	-	llmg_2445	-	multidrug resistance protein
2321	 34.15	0	2397414..2398640	-	408	125625203	lmrP	llmg_2446	-	multidrug resistance protein
2322	 33.97	0	2399342..2400448	+	368	125625204	-	llmg_2447	-	hypothetical protein
2323	 39.64	+1	2400544..2401890	-	448	125625205	pgi	llmg_2448	-	glucose-6-phosphate isomerase
2324	 35.03	0	2402210..2402740	+	176	125625206	-	llmg_2449	-	hypothetical protein
2325	 35.90	0	2402774..2403514	-	246	125625207	-	llmg_2450	-	hypothetical protein
2326	 32.96	0	2403560..2404363	-	267	125625208	-	llmg_2451	-	hypothetical protein
2327	 39.95	+1	2404433..2405278	-	281	125625209	-	llmg_2452	-	hypothetical protein
2328	 43.24	+2	2405452..2405784	+	110	125625210	-	llmg_2453	-	putative transcriptional regulator
2329	 32.42	0	2405901..2406230	+	109	125625211	-	llmg_2454	-	hypothetical protein
2330	 39.42	0	2406273..2408915	-	880	125625212	valS	llmg_2455	-	valyl-tRNA synthetase
2331	 29.86	-1	2408951..2409439	-	162	125625213	-	llmg_2456	-	hypothetical protein
2332	 41.67	+1	2409436..2409555	-	39	125625214	-	llmg_2457	-	hypothetical protein
2333	 35.62	0	2409746..2410402	-	218	125625215	-	llmg_2458	-	putative fibronectin-binding protein
2334	 33.33	0	2410880..2411128	-	82	125625216	-	llmg_2459	-	hypothetical protein
2335	 36.81	0	2411201..2411545	-	114	125625217	-	llmg_2460	-	hypothetical protein
2336	 35.25	0	2411538..2412059	-	173	125625218	-	llmg_2461	-	hypothetical protein
2337	 36.67	0	2412260..2412979	-	239	125625219	-	llmg_2463	-	hypothetical protein
2338	 37.87	0	2413060..2414601	-	513	125625220	-	llmg_2464	-	putative RNA methyltransferase
2339	 37.44	0	2414829..2417606	-	925	125625221	-	llmg_2465	-	hypothetical protein
2340	 33.95	0	2417964..2418773	+	269	125625222	recX	llmg_2466	-	recombination regulator RecX
2341	 40.18	+1	2424123..2425538	-	471	125625223	gntP	llmg_2467	-	gluconate transport protein
2342	 39.76	+1	2425675..2427183	-	502	125625224	gntK	llmg_2468	-	gluconate kinase
2343	 38.63	0	2427450..2428355	-	301	125625225	gntZ	llmg_2469	-	6-phosphogluconate dehydrogenase-like protein
2344	 37.10	0	2428725..2429573	+	282	125625226	gntR	llmg_2470	-	RpiR family transcriptional regulator
2345	 38.51	0	2429612..2429920	+	102	125625227	-	llmg_2471	-	hypothetical protein
2346	 36.01	0	2429992..2430777	-	261	125625228	-	llmg_2472	-	hypothetical protein
2347	 43.50	+2	2430908..2431153	-	81	125625229	rpsR	llmg_2473	-	30S ribosomal protein S18
2348	 41.72	+1	2431325..2431825	-	166	125625230	ssbB	llmg_2474	-	single-strand DNA-binding protein
2349	 38.44	0	2431855..2432148	-	97	125625231	rpsF	llmg_2475	-	30S ribosomal protein S6
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.