IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2158	 30.00	-1	2232961..2233320	-	119	125625040	-	llmg_2275	-	hypothetical protein
2159	 41.45	+1	2233383..2234072	-	229	125625041	rplA	llmg_2276	-	50S ribosomal protein L1
2160	 39.67	+1	2234459..2234884	-	141	125625042	rplK	llmg_2277	-	50S ribosomal protein L11
2161	 34.38	0	2235020..2235784	-	254	125625043	-	llmg_2278	-	hypothetical protein
2162	 35.61	0	2235784..2236662	-	292	125625044	bcrA	llmg_2279	-	putative bacitracin transport ATP-binding protein
2163	 35.71	0	2236729..2236938	-	69	125625045	-	llmg_2280	-	hypothetical protein
2164	 36.59	0	2236972..2237493	-	173	125625046	pmsR	llmg_2281	-	methionine sulfoxide reductase A
2165	 38.34	0	2237669..2238526	-	285	125625047	-	llmg_2282	-	hypothetical protein
2166	 36.38	0	2238571..2239029	-	152	125625048	-	llmg_2283	-	hypothetical protein
2167	 38.89	0	2239114..2239671	-	185	125625049	frr	llmg_2284	-	Frr protein
2168	 41.00	+1	2239828..2240544	-	238	125625050	pyrH	llmg_2285	-	PyrH protein
2169	 34.00	0	2240629..2241081	-	150	125625051	-	llmg_2286	-	hypothetical protein
2170	 40.24	+1	2241211..2242398	-	395	125625052	ackA2	llmg_2288	-	AckA2 protein
2171	 38.13	0	2242557..2243744	-	395	125625053	ackA1	llmg_2289	-	AckA1 protein
2172	 34.72	0	2243936..2244874	-	312	125625054	-	llmg_2290	-	hypothetical protein
2173	 40.08	+1	2244962..2245213	-	83	125625055	-	llmg_2291	-	hypothetical protein
2174	 40.07	+1	2245314..2247155	-	613	125625056	typA	llmg_2292	-	GTP-binding protein TypA/BipA-like protein
2175	 28.64	-2	2247824..2248228	-	134	125625057	-	llmg_2293	-	hypothetical protein
2176	 32.90	0	2248240..2248698	-	152	125625058	-	llmg_2294	-	hypothetical protein
2177	 39.41	0	2248713..2249486	-	257	125625059	-	llmg_2295	-	hypothetical protein
2178	 33.74	0	2249826..2250554	-	242	125625060	-	llmg_2297	-	hypothetical protein
2179	 32.88	0	2250747..2250968	+	73	125625061	-	llmg_2298	-	hypothetical protein
2180	 40.02	+1	2251002..2251973	+	323	125625062	glk	llmg_2299	-	glucokinase
2181	 36.18	0	2251976..2252362	+	128	125625063	-	llmg_2300	-	hypothetical protein
2182	 22.86	-2	2252332..2252436	+	34	125625064	-	llmg_2301	-	hypothetical protein
2183	 37.14	0	2252478..2252924	-	148	125625065	dpsA	llmg_2302	-	non-heme iron-binding ferritin
2184	 31.98	-1	2253090..2253755	+	221	125625066	comC	llmg_2304	-	type 4 prepilin-like protein specific leader peptidase
2185	 36.89	0	2253706..2254800	-	364	125625067	dinP	llmg_2305	-	DNA polymerase IV
2186	 30.08	-1	2254876..2255367	-	163	125625068	-	llmg_2306	-	hypothetical protein
2187	 38.15	0	2255443..2256936	-	497	125625069	arcD2	llmg_2307	-	arginine/ornithine antiporter
2188	 36.69	0	2257126..2258256	-	376	125625070	arcT	llmg_2308	-	transaminase
2189	 39.47	0	2258520..2259464	-	314	125625071	arcC2	llmg_2309	-	carbamate kinase
2190	 40.21	+1	2259497..2260441	-	314	125625072	arcC1	llmg_2310	-	carbamate kinase
2191	 38.20	0	2260459..2262039	-	526	125625073	arcD1	llmg_2311	-	arginine/ornithine antiporter
2192	 36.34	0	2262171..2263235	-	354	125625074	arcB	llmg_2312	-	ornithine carbamoyltransferase
2193	 38.28	0	2263401..2264633	-	410	125625075	arcA	llmg_2313	-	ArcA protein
2194	 37.76	0	2264934..2266628	-	564	125625076	argS	llmg_2314	-	arginyl-tRNA synthetase
2195	 31.81	-1	2266696..2267154	+	152	125625077	argR	llmg_2315	-	arginine repressor
2196	 37.91	0	2267316..2268647	-	443	125625078	murC	llmg_2316	-	UDP-N-acetylmuramate--L-alanine ligase
2197	 39.83	+1	2268848..2269447	-	199	125625079	-	llmg_2318	-	hypothetical protein
2198	 33.88	0	2269664..2272768	-	1034	125625080	snf	llmg_2319	-	SWI/SNF family helicase
2199	 35.57	0	2272997..2277331	-	1444	125625081	-	llmg_2320	-	hypothetical protein
2200	 39.64	+1	2277746..2279473	-	575	125625082	poxL	llmg_2321	-	pyruvate oxidase
2201	 34.06	0	2279723..2280679	-	318	125625083	-	llmg_2322	-	hypothetical protein
2202	 33.72	0	2280752..2281531	-	259	125625084	-	llmg_2323	-	hypothetical protein
2203	 31.23	-1	2281993..2282325	-	110	125625085	-	llmg_2324	-	hypothetical protein
2204	 33.73	0	2282357..2282863	-	168	125625086	-	llmg_2325	-	hypothetical protein
2205	 33.59	0	2283229..2284011	+	260	125625087	-	llmg_2326	-	hypothetical protein
2206	 40.11	+1	2284047..2284916	-	289	125625088	glpF3	llmg_2327	-	putative glycerol uptake facilitator protein
2207	 36.65	0	2285088..2287379	+	763	125625089	pepXP	llmg_2328	-	x-prolyl-dipeptidyl aminopeptidase
2208	 39.24	0	2287381..2288091	+	236	125625090	-	llmg_2329	-	hypothetical protein
2209	 34.99	0	2288241..2289083	+	280	125625091	-	llmg_2330	-	amino-acid ABC transporter extracellular binding protein
2210	 37.26	0	2289174..2290496	-	440	125625092	-	llmg_2331	-	pyridine nucleotide-disulfide oxidoreductase
2211	 39.19	0	2290608..2292059	-	483	125625093	gltX	llmg_2332	-	glutamyl-tRNA synthetase
2212	 34.62	0	2292686..2293228	-	180	125625094	-	llmg_2333	-	hypothetical protein
2213	 31.81	-1	2293373..2294224	+	283	125625095	-	llmg_2334	-	hypothetical protein
2214	 37.77	0	2294257..2295180	-	307	125625096	-	llmg_2335	-	hypothetical protein
2215	 36.23	0	2295320..2295871	+	183	125625097	-	llmg_2336	-	putative acetyltransferase
2216	 34.26	0	2295962..2296285	-	107	125625098	-	llmg_2337	-	hypothetical protein
2217	 33.63	0	2296282..2296620	-	112	125625099	-	llmg_2338	-	hypothetical protein
2218	 35.29	0	2296613..2296969	-	118	125625100	-	llmg_2339	-	transcriptional regulator
2219	 32.06	-1	2297090..2297719	-	209	125625101	-	llmg_2340	-	hypothetical protein
2220	 33.33	0	2297778..2298863	-	361	125625102	-	llmg_2341	-	hypothetical protein
2221	 33.78	0	2299130..2299807	+	225	125625103	-	llmg_2342	-	hypothetical protein
2222	 39.13	0	2299853..2301214	-	453	125625104	radA	llmg_2343	-	DNA repair protein RadA
2223	 34.57	0	2301833..2302396	-	187	125625105	-	llmg_2344	-	glycosyl transferase family protein
2224	 36.81	0	2302378..2302923	-	181	125625106	-	llmg_2345	-	histidinol-phosphate phosphatase
2225	 34.03	0	2302920..2303495	-	191	125625107	gmhA	llmg_2346	-	GmhA protein
2226	 35.79	0	2303557..2304531	-	324	125625108	-	llmg_2347	-	hypothetical protein
2227	 31.50	-1	2304561..2306084	-	507	125625109	-	llmg_2348	-	hypothetical protein
2228	 31.93	-1	2306158..2307081	-	307	125625110	-	llmg_2349	-	putative glycosyl transferase
2229	 31.04	-1	2307078..2308037	-	319	125625111	-	llmg_2350	-	putative glycosyl transferase
2230	 31.91	-1	2308056..2309036	-	326	125625112	-	llmg_2351	-	glycosyl transferase
2231	 32.16	-1	2309043..2310233	-	396	125625113	murM	llmg_2352	-	putative peptidoglycan branched peptide synthesis protein
2232	 41.47	+1	2310945..2311325	-	126	125625114	rplQ	llmg_2353	-	50S ribosomal protein L17
2233	 38.02	0	2311344..2312282	-	312	125625115	rpoA	llmg_2354	-	DNA-directed RNA polymerase subunit alpha
2234	 43.49	+2	2312331..2312714	-	127	125625116	rpsK	llmg_2355	-	30S ribosomal protein S11
2235	 41.80	+1	2312735..2313100	-	121	125625117	rpsM	llmg_2356	-	30S ribosomal protein S13
2236	 40.17	+1	2313118..2313234	-	38	125625118	rpmJ	llmg_2357	-	50S ribosomal protein L36
2237	 41.55	+1	2313288..2313506	-	72	125625119	infA	llmg_2358	-	translation initiation factor IF-1
2238	 36.11	0	2313809..2314456	-	215	125625120	adk	llmg_2359	-	adenylate kinase
2239	 38.18	0	2314596..2315915	-	439	125625121	secY	llmg_2361	-	preprotein translocase subunit SecY
2240	 42.34	+1	2315993..2316436	-	147	125625122	rplO	llmg_2362	-	50S ribosomal protein L15
2241	 38.89	0	2316732..2316911	-	59	125625123	rpmD	llmg_2363	-	50S ribosomal protein L30
2242	 45.36	+2	2316922..2317428	-	168	125625124	rpsE	llmg_2364	-	30S ribosomal protein S5
2243	 43.39	+2	2317447..2317794	-	115	125625125	rplR	llmg_2365	-	50S ribosomal protein L18
2244	 41.71	+1	2318063..2318599	-	178	125625126	rplF	llmg_2366	-	50S ribosomal protein L6
2245	 38.35	0	2318816..2319214	-	132	125625127	rpsH	llmg_2367	-	30S ribosomal protein S8
2246	 33.72	0	2319420..2319680	-	86	125625128	-	llmg_2368	-	hypothetical protein
2247	 32.27	-1	2319744..2320025	-	93	125625129	-	llmg_2369	-	hypothetical protein
2248	 41.40	+1	2320176..2320361	-	61	125625130	rpsN	llmg_2370	-	30S ribosomal protein S14
2249	 39.59	0	2320380..2320922	-	180	125625131	rplE	llmg_2371	-	50S ribosomal protein L5
2250	 37.58	0	2320942..2321247	-	101	125625132	rplX	llmg_2372	-	50S ribosomal protein L24
2251	 45.53	+2	2321381..2321749	-	122	125625133	rplN	llmg_2373	-	50S ribosomal protein L14
2252	 37.93	0	2321772..2322032	-	86	125625134	rpsQ	llmg_2374	-	30S ribosomal protein S17
2253	 37.62	0	2322053..2322262	-	69	125625135	rpmC	llmg_2375	-	50S ribosomal protein L29
2254	 44.44	+2	2322262..2322675	-	137	125625136	rplP	llmg_2376	-	50S ribosomal protein L16
2255	 42.20	+1	2322679..2323332	-	217	125625137	rpsC	llmg_2377	-	30S ribosomal protein S3
2256	 39.66	+1	2323345..2323692	-	115	125625138	rplV	llmg_2378	-	50S ribosomal protein L22
2257	 42.29	+1	2323708..2323986	-	92	125625139	rpsS	llmg_2379	-	30S ribosomal protein S19
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.