IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2069	 34.54	0	2151214..2152122	-	302	125624951	-	llmg_2184	-	hypothetical protein
2070	 35.86	0	2152257..2153126	-	289	125624952	lacX	llmg_2185	-	galactose mutarotase related enzyme
2071	 37.25	0	2153217..2154161	-	314	125624953	cbf	llmg_2186	-	putative CMP-binding factor
2072	 35.87	0	2154235..2155533	-	432	125624954	-	llmg_2187	-	hypothetical protein
2073	 28.89	-1	2155543..2155812	-	89	125624955	-	llmg_2188	-	no similarity
2074	 32.76	0	2155879..2156052	-	57	125624956	tmrB	llmg_2189	-	putative tunicamycin resistance protein
2075	 37.25	0	2156049..2156711	-	220	125624957	rpe	llmg_2190	-	ribulose-phosphate 3-epimerase
2076	 36.43	0	2156785..2157042	-	85	125624958	-	llmg_2191	-	hypothetical protein
2077	 30.98	-1	2157039..2157293	-	84	125624959	-	llmg_2192	-	hypothetical protein
2078	 35.71	0	2157265..2158188	-	307	125624960	-	llmg_2193	-	ribosome-associated GTPase
2079	 38.45	0	2158249..2159322	-	357	125624961	-	llmg_2194	-	hypothetical protein
2080	 37.64	0	2159623..2162016	-	797	125624962	pheT	llmg_2195	-	phenylalanyl-tRNA synthetase subunit beta
2081	 38.63	0	2162127..2163164	-	345	125624963	pheS	llmg_2196	-	phenylalanyl-tRNA synthetase subunit alpha
2082	 33.55	0	2163648..2164103	+	151	125624964	padC	llmg_2197	-	PadC protein
2083	 34.26	0	2164419..2164958	+	179	125624965	padR	llmg_2198	-	putative transcriptional repressor of padC
2084	 35.43	0	2165127..2166605	+	492	125624966	chiC	llmg_2199	-	acidic endochitinase precursor
2085	 39.22	0	2166626..2167288	+	220	125624967	chb	llmg_2200	-	chitin binding protein, putative
2086	 40.37	+1	2167331..2168623	-	430	125624968	purA	llmg_2201	-	adenylosuccinate synthetase
2087	 24.56	-2	2168798..2168911	-	37	125624969	-	llmg_2202	-	hypothetical protein
2088	 32.68	0	2168989..2169600	-	203	125624970	cadD	llmg_2203	-	cadmium resistance protein
2089	 38.87	0	2169764..2170630	+	288	125624971	hslO	llmg_2204	-	Hsp33-like chaperonin
2090	 36.02	0	2170685..2171206	+	173	125624972	-	llmg_2205	-	dihydrofolate reductase family protein
2091	 37.95	0	2171541..2172818	+	425	125624973	-	llmg_2206	-	hypothetical protein
2092	 37.87	0	2172828..2173400	+	190	125624974	-	llmg_2207	-	hypothetical protein
2093	 33.08	0	2173443..2173835	+	130	125624975	-	llmg_2208	-	hypothetical protein
2094	 40.80	+1	2173947..2174951	+	334	125624976	-	llmg_2209	-	tRNA-dihydrouridine synthase B
2095	 36.56	0	2175017..2175109	+	30	125624977	-	llmg_2210	-	none
2096	 31.60	-1	2175267..2175497	+	76	125624978	-	llmg_2211	-	hypothetical protein
2097	 38.19	0	2175537..2176421	-	294	125624979	-	llmg_2212	-	hypothetical protein
2098	 35.84	0	2176572..2177447	-	291	125624980	-	llmg_2213	-	hypothetical protein
2099	 36.56	0	2177551..2178480	-	309	125624981	-	llmg_2214	-	hypothetical protein
2100	 38.41	0	2178461..2180233	-	590	125624982	aspS	llmg_2215	-	aspartyl-tRNA synthetase
2101	 37.67	0	2180297..2180665	-	122	125624983	-	llmg_2216	-	cell-cycle regulation histidine triad protein
2102	 37.74	0	2180691..2181983	-	430	125624984	hisS	llmg_2217	-	histidyl-tRNA synthetase
2103	 32.99	0	2182296..2183456	-	386	125624985	-	llmg_2218	-	hypothetical protein
2104	 33.33	0	2183700..2184023	-	107	125624986	-	llmg_2219	-	hypothetical protein
2105	 39.74	+1	2184088..2184165	-	25	125624987	-	llmg_2220	-	hypothetical protein
2106	 31.30	-1	2184552..2184896	-	114	125624988	-	llmg_2221	-	hypothetical protein
2107	 36.73	0	2185006..2185329	-	107	125624989	-	llmg_2222	-	hypothetical protein
2108	 38.10	0	2185333..2186193	-	286	125624990	-	llmg_2223	-	hypothetical protein
2109	 38.39	0	2186432..2187004	-	190	125624991	pgsA	llmg_2224	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
2110	 40.13	+1	2187046..2187942	-	298	125624992	-	llmg_2225	-	hypothetical protein
2111	 33.10	0	2188155..2189438	-	427	125624993	-	llmg_2226	-	M16 family peptidase
2112	 35.28	0	2189428..2190714	-	428	125624994	-	llmg_2227	-	hypothetical protein
2113	 37.19	0	2190912..2191274	+	120	125624995	-	llmg_2228	-	hypothetical protein
2114	 35.46	0	2191274..2192353	+	359	125624996	recF	llmg_2229	-	recombination protein F
2115	 36.31	0	2192458..2192826	-	122	125624997	pcaC	llmg_2230	-	gamma-carboxymuconolactone decarboxylase
2116	 32.28	-1	2192903..2193280	+	125	125624998	rmeD	llmg_2231	-	MerR family transcriptional regulator
2117	 35.30	0	2193297..2194262	-	321	125624999	-	llmg_2232	-	hypothetical protein
2118	 37.72	0	2194374..2195354	-	326	125625000	galE	llmg_2233	-	GalE protein
2119	 35.36	0	2195471..2196952	-	493	125625001	galT	llmg_2234	-	galactose-1-phosphate uridylyltransferase
2120	 37.42	0	2197125..2198324	-	399	125625002	galK	llmg_2235	-	galactokinase
2121	 36.08	0	2198351..2199370	-	339	125625003	galM	llmg_2236	-	aldose 1-epimerase
2122	 38.16	0	2199576..2200964	-	462	125625004	galP	llmg_2237	-	galactose permease
2123	 31.61	-1	2201271..2202023	-	250	125625005	-	llmg_2238	-	hypothetical protein
2124	 37.37	0	2203231..2204370	-	379	125625006	nadR	llmg_2241	-	putative nicotinamide-nucleotide adenylyltransferase
2125	 35.07	0	2204357..2205334	-	325	125625007	-	llmg_2242	-	hypothetical protein
2126	 40.22	+1	2205532..2206824	-	430	125625008	-	llmg_2243	-	hypothetical protein
2127	 37.55	0	2207148..2208119	-	323	125625009	-	llmg_2244	-	hypothetical protein
2128	 27.30	-2	2208291..2208572	+	93	125625010	-	llmg_2245	-	hypothetical protein
2129	 34.55	0	2208602..2209423	-	273	125625011	rrmA	llmg_2246	-	putative rRNA (guanine-N1-)-methyltransferase
2130	 29.61	-1	2210138..2210863	-	241	125625012	-	llmg_2247	-	hypothetical protein
2131	 28.19	-2	2210856..2212178	-	440	125625013	-	llmg_2248	-	putative abortive phage resistance
2132	 38.14	0	2212625..2212957	-	110	125625014	-	llmg_2249	-	hypothetical protein
2133	 39.00	0	2212957..2213397	-	146	125625015	ps519	llmg_2250	-	putative terminase small subunit
2134	 38.12	0	2213530..2214072	-	180	125625016	ps518	llmg_2251	-	phage protein by Glimmer/Critica
2135	 39.04	0	2214289..2215917	-	542	125625017	ps517	llmg_2252	-	putative DNA primase
2136	 43.65	+2	2215928..2216722	-	264	125625018	ps516	llmg_2253	-	phage protein by Glimmer/Critica
2137	 39.58	0	2216719..2217054	-	111	125625019	ps515	llmg_2254	-	phage protein by Glimmer/Critica
2138	 38.75	0	2217124..2217363	-	79	125625020	ps514	llmg_2255	-	phage protein by Glimmer/Critica
2139	 33.33	0	2217401..2217682	-	93	125625021	ps513	llmg_2256	-	hypothetical protein
2140	 34.92	0	2217675..2217800	-	41	125625022	ps512	llmg_2257	-	hypothetical protein
2141	 28.12	-2	2217816..2217911	-	31	125625023	ps511	llmg_2258	-	hypothetical protein
2142	 33.82	0	2217904..2218107	-	67	125625024	ps510	llmg_2259	-	hypothetical protein
2143	 36.02	0	2218104..2218625	-	173	125625025	ps509	llmg_2260	-	phage protein by Glimmer/Critica
2144	 37.24	0	2218884..2219549	-	221	125625026	ps508	llmg_2261	-	phage protein by Glimmer/Critica
2145	 25.97	-2	2220104..2220646	+	180	125625027	ps507	llmg_2262	-	hypothetical protein
2146	 28.57	-2	2221547..2222281	+	244	125625028	ps506	llmg_2263	-	hypothetical protein
2147	 30.11	-1	2222487..2222672	+	61	125625029	ps505	llmg_2264	-	hypothetical protein
2148	 30.80	-1	2222859..2223923	+	354	125625030	ps504	llmg_2265	-	hypothetical protein
2149	 31.75	-1	2224575..2224889	+	104	125625031	ps503	llmg_2266	-	hypothetical protein
2150	 38.97	0	2225693..2225887	+	64	125625032	ps502	llmg_2267	-	hypothetical protein
2151	 35.62	0	2226384..2227565	+	393	125625033	ps501	llmg_2268	-	phage integrase
2152	 38.60	0	2227778..2228404	+	208	125625034	cutC	llmg_2269	-	copper homeostasis protein cutC
2153	 32.84	0	2228437..2229456	-	339	125625035	ecsB	llmg_2270	-	ABC-type transporter ATP-binding protein
2154	 38.13	0	2229449..2230219	-	256	125625036	ecsA	llmg_2271	-	ABC-type transporter ATP-binding protein
2155	 32.88	0	2230238..2232016	-	592	125625037	-	llmg_2272	-	hypothetical protein
2156	 35.84	0	2232315..2232713	+	132	125625038	-	llmg_2273	-	hypothetical protein
2157	 30.18	-1	2232728..2232949	+	73	125625039	-	llmg_2274	-	hypothetical protein
2158	 30.00	-1	2232961..2233320	-	119	125625040	-	llmg_2275	-	hypothetical protein
2159	 41.45	+1	2233383..2234072	-	229	125625041	rplA	llmg_2276	-	50S ribosomal protein L1
2160	 39.67	+1	2234459..2234884	-	141	125625042	rplK	llmg_2277	-	50S ribosomal protein L11
2161	 34.38	0	2235020..2235784	-	254	125625043	-	llmg_2278	-	hypothetical protein
2162	 35.61	0	2235784..2236662	-	292	125625044	bcrA	llmg_2279	-	putative bacitracin transport ATP-binding protein
2163	 35.71	0	2236729..2236938	-	69	125625045	-	llmg_2280	-	hypothetical protein
2164	 36.59	0	2236972..2237493	-	173	125625046	pmsR	llmg_2281	-	methionine sulfoxide reductase A
2165	 38.34	0	2237669..2238526	-	285	125625047	-	llmg_2282	-	hypothetical protein
2166	 36.38	0	2238571..2239029	-	152	125625048	-	llmg_2283	-	hypothetical protein
2167	 38.89	0	2239114..2239671	-	185	125625049	frr	llmg_2284	-	Frr protein
2168	 41.00	+1	2239828..2240544	-	238	125625050	pyrH	llmg_2285	-	PyrH protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.