IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
160	 29.21	-1	154139..154453	+	104	125623042	epsR	llmg_0163	-	transcriptional regulator
161	 40.91	+1	154740..155888	-	382	125623043	tgt	llmg_0164	-	queuine tRNA-ribosyltransferase
162	 34.93	0	156088..156777	+	229	125623044	-	llmg_0165	-	hypothetical protein
163	 36.53	0	158195..158632	-	145	125623045	-	llmg_0167	-	hypothetical protein
164	 38.17	0	158769..159554	+	261	125623046	-	llmg_0168	-	deoxyribonuclease
165	 34.58	0	159944..160183	+	79	125623047	-	llmg_0169	-	hypothetical protein
166	 36.62	0	160381..161961	+	526	125623048	-	llmg_0170	-	hypothetical protein
167	 40.00	+1	162090..163304	+	404	125623049	aspC	llmg_0171	-	aminotransferase AlaT
168	 38.78	0	163457..164245	+	262	125623050	codY	llmg_0172	-	transcriptional repressor CodY
169	 32.50	0	164352..164471	+	39	125623051	-	llmg_0173	-	hypothetical protein
170	 39.54	0	164523..164828	+	101	125623052	gatC	llmg_0174	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
171	 38.60	0	164828..166288	+	486	125623053	gatA	llmg_0175	-	amidase
172	 39.19	0	166313..167746	+	477	125623054	gatB	llmg_0176	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
173	 40.33	+1	167870..169369	+	499	125623055	-	llmg_0177	-	amidase
174	 40.94	+1	169436..170776	-	446	125623056	dinF	llmg_0178	-	damage-inducible protein DinF
175	 40.91	+1	170956..171153	-	65	125623057	cspE	llmg_0180	-	cold shock-like protein cspE
176	 33.15	0	171272..171805	+	177	125623058	-	llmg_0181	-	5-formyltetrahydrofolate cyclo-ligase family protein
177	 37.23	0	171795..172487	+	230	125623059	-	llmg_0182	-	rhomboid-related protein 1
178	 34.95	0	172586..173017	+	143	125623060	-	llmg_0183	-	hypothetical protein
179	 35.70	0	173038..173418	+	126	125623061	-	llmg_0184	-	putative lactoylglutathione lyase
180	 35.04	0	173529..174581	+	350	125623062	-	llmg_0185	-	acetyltransferase
181	 38.92	0	174930..176021	+	363	125623063	-	llmg_0186	-	hypothetical protein
182	 43.77	+2	176121..177605	+	494	125623064	celB	llmg_0187	-	cellobiose-specific PTS system IIC component
183	 34.78	0	177731..177937	+	68	125623065	-	llmg_0188	-	hypothetical protein
184	 34.36	0	177934..178128	+	64	125623066	-	llmg_0189	-	hypothetical protein
185	 39.67	+1	178257..179693	+	478	125623067	bglS	llmg_0190	-	Beta-glucosidase A
186	 37.31	0	179759..180211	+	150	125623068	dut	llmg_0191	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
187	 37.06	0	180304..181644	+	446	125623069	-	llmg_0192	-	5'-nucleotidase precursor
188	 34.51	0	181659..182426	+	255	125623070	-	llmg_0193	-	hypothetical protein
189	 36.70	0	182618..183715	+	365	125623071	-	llmg_0194	-	hypothetical protein
190	 37.09	0	183963..184574	+	203	125623072	-	llmg_0195	-	putative NADH dehydrogenase
191	 38.02	0	184725..185705	+	326	125623073	-	llmg_0196	-	prenyl transferase
192	 33.33	0	185902..186807	+	301	125623074	menA	llmg_0197	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
193	 34.22	0	186846..187973	-	375	125623075	-	llmg_0198	-	hypothetical protein
194	 39.26	0	188447..190522	-	691	125623076	feoB	llmg_0199	-	ferrous iron transport protein B-like protein
195	 36.48	0	190625..191101	-	158	125623077	feoA	llmg_0200	-	ferrous iron transport protein A
196	 36.83	0	191414..191842	+	142	125623078	msrB	llmg_0201	-	methionine sulfoxide reductase B
197	 39.82	+1	191970..193634	-	554	125623079	-	llmg_0202	-	kinase related to dihydroxyacetone kinase
198	 37.94	0	193634..194002	-	122	125623080	-	llmg_0203	-	hypothetical protein
199	 37.95	0	194276..194470	-	64	125623081	rpmB	llmg_0204	-	50S ribosomal protein L28
200	 37.73	0	194607..195266	+	219	125623082	-	llmg_0205	-	hypothetical protein
201	 37.70	0	195461..196330	+	289	125623083	rmlA	llmg_0206	-	glucose-1-phosphate thymidylyltransferase
202	 35.86	0	196330..196923	+	197	125623084	rmlC	llmg_0207	-	dTDP-4-keto-6-deoxyglucose-3,5-epimerase
203	 36.08	0	196923..197177	+	84	125623085	-	llmg_0208	-	hypothetical protein
204	 38.75	0	197217..198269	+	350	125623086	rmlB	llmg_0209	-	dTDP-glucose 4,6-dehydratase
205	 39.33	0	198457..199356	+	299	125623087	rmlD	llmg_0210	-	dTDP-4-dehydrorhamnose reductase
206	 36.23	0	199519..200727	+	402	125623088	rgpA	llmg_0211	-	rhamnosyltransferase RgpA
207	 35.77	0	200717..201658	+	313	125623089	rgpB	llmg_0212	-	rhamnosyltransferase RgpB
208	 35.93	0	201655..202464	+	269	125623090	rgpC	llmg_0213	-	capsule polysaccharide export inner-membrane protein RgpC
209	 36.01	0	202479..203672	+	397	125623091	rgpD	llmg_0214	-	polysaccharide ABC transporter ATP-binding protein
210	 33.26	0	203650..205041	+	463	125623092	-	llmg_0215	-	hypothetical protein
211	 31.66	-1	205049..206005	+	318	125623093	rgpE	llmg_0216	-	glycosyltransferase RgpE
212	 32.31	-1	205995..207761	+	588	125623094	rgpF	llmg_0217	-	alpha-L-Rha alpha-1,2-L-rhamnosyltransferase RgpF
213	 34.55	0	207843..208580	+	245	125623095	-	llmg_0218	-	putative glycosyl transferase
214	 30.23	-1	208580..208933	+	117	125623096	-	llmg_0219	-	hypothetical protein
215	 28.68	-2	208969..209763	+	264	125623097	-	llmg_0220	-	putative glycosyl transferase
216	 29.71	-1	209769..210761	+	330	125623098	-	llmg_0221	-	glycosyl transferase
217	 29.73	-1	210754..211752	+	332	125623099	wefC	llmg_0222	-	hypothetical protein
218	 29.08	-1	211819..212853	+	344	125623100	-	llmg_0223	-	hypothetical protein
219	 34.66	0	212853..213983	+	376	125623101	glf1	llmg_0224	-	Glf1 protein
220	 32.56	0	213980..215398	+	472	125623102	rfbX	llmg_0225	-	putative O-antigen transporter
221	 34.83	0	215427..217226	+	599	125623103	-	llmg_0226	-	surface protein
222	 30.78	-1	217228..218283	+	351	125623104	-	llmg_0227	-	hypothetical protein
223	 34.40	0	218280..218654	+	124	125623105	-	llmg_0228	-	hypothetical protein
224	 39.88	+1	218798..220096	-	432	125623106	-	llmg_0229	-	hypothetical protein
225	 39.74	+1	220476..221957	+	493	125623107	guaB	llmg_0230	-	inositol-5-monophosphate dehydrogenase
226	 40.23	+1	222183..223328	+	381	125623108	-	llmg_0231	-	GTP-binding protein YqeH
227	 37.50	0	223423..223926	+	167	125623109	-	llmg_0232	-	hypothetical protein
228	 38.47	0	224009..225253	+	414	125623110	hflX	llmg_0233	-	GTP-binding protein hflX
229	 49.85	+2	225382..225708	-	108	125623111	-	llmg_0234	-	putative secreted protein
230	 35.87	0	225877..226191	+	104	125623112	-	llmg_0235	-	hypothetical protein
231	 40.17	+1	226266..226865	+	199	125623113	nadD1	llmg_0236	-	nicotinate-nucleotide adenylyltransferase
232	 38.41	0	226858..227448	+	196	125623114	-	llmg_0237	-	putative hydrolase
233	 36.34	0	227495..227926	+	143	125623115	-	llmg_0238	-	hypothetical protein
234	 39.17	0	228093..228452	+	119	125623116	-	llmg_0239	-	hypothetical protein
235	 38.37	0	228552..229286	+	244	125623117	-	llmg_0240	-	hypothetical protein
236	 36.49	0	229336..230475	+	379	125623118	-	llmg_0241	-	hypothetical protein
237	 39.33	0	230628..231344	+	238	125623119	-	llmg_0242	-	hypothetical protein
238	 40.91	+1	232047..232706	+	219	125623120	ung	llmg_0244	-	uracil-DNA glycosylase
239	 44.63	+2	232743..233654	-	303	125623121	-	llmg_0245	-	putative zinc-binding dehydrogenase
240	 39.36	0	233677..234555	-	292	125623122	-	llmg_0246	-	hypothetical protein
241	 41.31	+1	234577..235416	-	279	125623123	-	llmg_0247	-	putative UDP-glucose 4-epimerase
242	 36.81	0	235620..236165	+	181	125623124	-	llmg_0248	-	TetR family transcriptional regulator
243	 40.45	+1	236277..237737	-	486	125623125	-	llmg_0249	-	putative transporter
244	 37.37	0	237923..238294	+	123	125623126	rmeC	llmg_0250	-	MerR family transcriptional regulator
245	 39.55	0	238375..238551	+	58	125623127	rpsU	llmg_0251	-	30S ribosomal protein S21
246	 32.47	0	238659..239471	+	270	125623128	-	llmg_0252	-	hypothetical protein
247	 41.69	+1	239673..240869	+	398	125623129	pgk	llmg_0253	-	phosphoglycerate kinase
248	 35.41	0	240927..241601	+	224	125623130	hadL	llmg_0254	-	cryptic haloacid dehalogenase 1
249	 37.49	0	241721..242707	+	328	125623131	dhaK	llmg_0255	-	dihydroxyacetone kinase DhaK
250	 38.17	0	244314..244892	+	192	125623132	dhaM	llmg_0257	-	dihydroxyacetone kinase DhaM
251	 36.02	0	244889..245260	+	123	125623133	-	llmg_0258	-	hypothetical protein
252	 39.26	0	245939..247321	-	460	125623134	pepDA	llmg_0260	-	PepDA protein
253	 36.40	0	248309..249451	+	380	125623135	-	llmg_0262	-	ABC transporter permease protein
254	 37.52	0	249574..250743	+	389	125623136	-	llmg_0263	-	putative methyltransferase
255	 35.99	0	250908..252830	+	640	125623137	fbp	llmg_0264	-	fructose-bisphosphatase
256	 39.14	0	253062..254336	-	424	125623138	-	llmg_0265	-	putative flavoprotein
257	 37.91	0	254374..255204	+	276	125623139	-	llmg_0266	-	putative sugar kinase
258	 45.17	+2	255275..255688	+	137	125623140	-	llmg_0267	-	hypothetical protein
259	 38.78	0	255940..257721	+	593	125623141	-	llmg_0268	-	ABC transporter ATP binding protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.