IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2009	 36.84	0	2096680..2096964	-	94	125624891	ps422	llmg_2120	-	hypothetical protein
2010	 33.78	0	2096981..2097205	-	74	125624892	ps421	llmg_2121	-	hypothetical protein
2011	 31.67	-1	2097312..2097551	-	79	125624893	ps420	llmg_2122	-	hypothetical protein
2012	 33.87	0	2097548..2097922	-	124	125624894	ps419	llmg_2123	-	hypothetical protein
2013	 35.12	0	2097919..2098644	-	241	125624895	ps418	llmg_2124	-	hypothetical protein
2014	 33.97	0	2098644..2099426	-	260	125624896	ps417	llmg_2125	-	phage replication initiation protein
2015	 36.38	0	2099555..2099980	-	141	125624897	ps416	llmg_2126	-	single-strand binding protein ssB
2016	 31.11	-1	2099973..2100107	-	44	125624898	-	llmg_2127	-	putative translation initiation factor
2017	 41.13	+1	2100360..2100731	-	123	125624899	ps415	llmg_2128	-	putative translation initiation factor
2018	 36.62	0	2100740..2101135	-	131	125624900	ps414	llmg_2129	-	hypothetical protein
2019	 28.40	-2	2101234..2101476	-	80	125624901	ps413	llmg_2130	-	hypothetical protein
2020	 34.38	0	2101482..2101961	+	159	125624902	ps412	llmg_2131	-	hypothetical protein
2021	 34.31	0	2101954..2102157	-	67	125624903	ps411	llmg_2132	-	hypothetical protein
2022	 39.26	0	2102253..2102522	-	89	125624904	ps410	llmg_2133	-	hypothetical protein
2023	 37.15	0	2102536..2103294	-	252	125624905	ps409	llmg_2134	-	putative phage antirepressor protein
2024	 34.94	0	2103307..2103555	-	82	125624906	ps408	llmg_2135	-	putative Cro repressor
2025	 29.96	-1	2103660..2103896	+	78	125624907	ps407	llmg_2136	-	hypothetical protein
2026	 27.48	-2	2103868..2104089	-	73	125624908	ps406	llmg_2137	-	hypothetical protein
2027	 23.68	-2	2104187..2104300	+	37	125624909	ps405	llmg_2138	-	hypothetical protein
2028	 35.54	0	2104945..2105442	+	165	125624910	ps404	llmg_2139	-	cI-like repressor
2029	 34.48	0	2105448..2105882	+	144	125624911	ps403	llmg_2140	-	hypothetical protein
2030	 36.31	0	2105896..2106231	+	111	125624912	ps402	llmg_2141	-	hypothetical protein
2031	 33.66	0	2106266..2107480	+	404	125624913	ps401	llmg_2142	-	phage integrase
2032	 37.28	0	2107775..2108281	-	168	125624914	-	llmg_2143	-	putative 20-kDa protein
2033	 34.92	0	2108291..2108479	-	62	125624915	-	llmg_2144	-	hypothetical protein
2034	 31.37	-1	2108490..2109050	-	186	125624916	-	llmg_2145	-	hypothetical protein
2035	 41.56	+1	2109078..2109320	-	80	125624917	-	llmg_2146	-	hypothetical protein
2036	 39.20	0	2109555..2110526	-	323	125624918	fmt	llmg_2147	-	methionyl-tRNA formyltransferase
2037	 34.19	0	2110523..2110987	-	154	125624919	-	llmg_2148	-	hypothetical protein
2038	 35.82	0	2110953..2111474	-	173	125624920	-	llmg_2149	-	putative Nudix hydrolase
2039	 31.47	-1	2111488..2111862	-	124	125624921	-	llmg_2150	-	hypothetical protein
2040	 35.88	0	2111849..2112595	-	248	125624922	-	llmg_2151	-	hypothetical protein
2041	 37.72	0	2112728..2113069	-	113	125624923	-	llmg_2152	-	hypothetical protein
2042	 37.98	0	2113093..2115438	-	781	125624924	priA	llmg_2153	-	primosome assembly protein PriA
2043	 37.57	0	2115615..2115968	-	117	125624925	rpoZ	llmg_2154	-	DNA-directed RNA polymerase subunit omega
2044	 37.86	0	2116037..2116654	-	205	125624926	gmk	llmg_2155	-	guanylate kinase
2045	 39.97	+1	2116803..2118398	-	531	125624927	-	llmg_2156	-	phosphodiesterase
2046	 37.82	0	2118632..2119345	-	237	125624928	nagB2	llmg_2157	-	putative 6-phosphogluconolactonase
2047	 38.71	0	2119449..2119541	-	30	125624929	-	llmg_2158	-	hypothetical protein
2048	 38.71	0	2119619..2119711	-	30	125624930	-	llmg_2159	-	hypothetical protein
2049	 41.08	+1	2119789..2120988	-	399	125624931	metK	llmg_2160	-	S-adenosylmethionine synthetase
2050	 37.69	0	2121533..2122726	-	397	125624932	cfa	llmg_2161	-	cyclopropane-fatty-acyl-phospholipid synthase
2051	 35.06	0	2122883..2123635	+	250	125624933	birA2	llmg_2162	-	acetyl-CoA carboxylase ligase / biotin operon repressor bifunctional protein
2052	 39.57	0	2123763..2124227	-	154	125624934	-	llmg_2163	-	hypothetical protein
2053	 32.70	0	2124563..2125675	-	370	125624935	-	llmg_2164	-	hypothetical protein
2054	 35.56	0	2125886..2127502	-	538	125624936	acmB	llmg_2165	-	N-acetylmuramoyl-L-alanine amidase
2055	 42.03	+1	2129181..2130077	-	298	125624937	fbaA	llmg_2167	-	fructose-bisphosphate aldolase
2056	 34.39	0	2136110..2136769	-	219	125624938	-	llmg_2168	-	hypothetical protein
2057	 40.03	+1	2136874..2138814	-	646	125624939	thrS	llmg_2169	-	ThrS protein
2058	 34.59	0	2139513..2139830	-	105	125624940	-	llmg_2170	-	ribonucleoside-diphosphate reductase
2059	 37.53	0	2139888..2141150	-	420	125624941	mntA	llmg_2171	-	putative Mn and Fe transporters
2060	 38.92	0	2141256..2141864	-	202	125624942	-	llmg_2172	-	putative nitroreductase
2061	 37.80	0	2142091..2142381	+	96	125624943	-	llmg_2173	-	hypothetical protein
2062	 38.71	0	2142477..2143238	+	253	125624944	tnp904	llmg_2174	-	transposase for insertion sequence element IS904I
2063	 33.33	0	2144101..2144670	-	189	125624945	-	llmg_2175	-	hypothetical protein
2064	 39.31	0	2144746..2145381	-	211	125624946	upp	llmg_2176	-	uracil phosphoribosyltransferase
2065	 36.75	0	2145583..2146722	-	379	125624947	nah	llmg_2177	-	Na+/H+ antiporter
2066	 36.64	0	2148432..2149520	-	362	125624948	metB1	llmg_2181	-	cystathionine gamma-synthase
2067	 34.69	0	2149551..2150510	-	319	125624949	metA	llmg_2182	-	homoserine O-succinyltransferase
2068	 33.15	0	2150648..2151205	-	185	125624950	-	llmg_2183	-	hypothetical protein
2069	 34.54	0	2151214..2152122	-	302	125624951	-	llmg_2184	-	hypothetical protein
2070	 35.86	0	2152257..2153126	-	289	125624952	lacX	llmg_2185	-	galactose mutarotase related enzyme
2071	 37.25	0	2153217..2154161	-	314	125624953	cbf	llmg_2186	-	putative CMP-binding factor
2072	 35.87	0	2154235..2155533	-	432	125624954	-	llmg_2187	-	hypothetical protein
2073	 28.89	-1	2155543..2155812	-	89	125624955	-	llmg_2188	-	no similarity
2074	 32.76	0	2155879..2156052	-	57	125624956	tmrB	llmg_2189	-	putative tunicamycin resistance protein
2075	 37.25	0	2156049..2156711	-	220	125624957	rpe	llmg_2190	-	ribulose-phosphate 3-epimerase
2076	 36.43	0	2156785..2157042	-	85	125624958	-	llmg_2191	-	hypothetical protein
2077	 30.98	-1	2157039..2157293	-	84	125624959	-	llmg_2192	-	hypothetical protein
2078	 35.71	0	2157265..2158188	-	307	125624960	-	llmg_2193	-	ribosome-associated GTPase
2079	 38.45	0	2158249..2159322	-	357	125624961	-	llmg_2194	-	hypothetical protein
2080	 37.64	0	2159623..2162016	-	797	125624962	pheT	llmg_2195	-	phenylalanyl-tRNA synthetase subunit beta
2081	 38.63	0	2162127..2163164	-	345	125624963	pheS	llmg_2196	-	phenylalanyl-tRNA synthetase subunit alpha
2082	 33.55	0	2163648..2164103	+	151	125624964	padC	llmg_2197	-	PadC protein
2083	 34.26	0	2164419..2164958	+	179	125624965	padR	llmg_2198	-	putative transcriptional repressor of padC
2084	 35.43	0	2165127..2166605	+	492	125624966	chiC	llmg_2199	-	acidic endochitinase precursor
2085	 39.22	0	2166626..2167288	+	220	125624967	chb	llmg_2200	-	chitin binding protein, putative
2086	 40.37	+1	2167331..2168623	-	430	125624968	purA	llmg_2201	-	adenylosuccinate synthetase
2087	 24.56	-2	2168798..2168911	-	37	125624969	-	llmg_2202	-	hypothetical protein
2088	 32.68	0	2168989..2169600	-	203	125624970	cadD	llmg_2203	-	cadmium resistance protein
2089	 38.87	0	2169764..2170630	+	288	125624971	hslO	llmg_2204	-	Hsp33-like chaperonin
2090	 36.02	0	2170685..2171206	+	173	125624972	-	llmg_2205	-	dihydrofolate reductase family protein
2091	 37.95	0	2171541..2172818	+	425	125624973	-	llmg_2206	-	hypothetical protein
2092	 37.87	0	2172828..2173400	+	190	125624974	-	llmg_2207	-	hypothetical protein
2093	 33.08	0	2173443..2173835	+	130	125624975	-	llmg_2208	-	hypothetical protein
2094	 40.80	+1	2173947..2174951	+	334	125624976	-	llmg_2209	-	tRNA-dihydrouridine synthase B
2095	 36.56	0	2175017..2175109	+	30	125624977	-	llmg_2210	-	none
2096	 31.60	-1	2175267..2175497	+	76	125624978	-	llmg_2211	-	hypothetical protein
2097	 38.19	0	2175537..2176421	-	294	125624979	-	llmg_2212	-	hypothetical protein
2098	 35.84	0	2176572..2177447	-	291	125624980	-	llmg_2213	-	hypothetical protein
2099	 36.56	0	2177551..2178480	-	309	125624981	-	llmg_2214	-	hypothetical protein
2100	 38.41	0	2178461..2180233	-	590	125624982	aspS	llmg_2215	-	aspartyl-tRNA synthetase
2101	 37.67	0	2180297..2180665	-	122	125624983	-	llmg_2216	-	cell-cycle regulation histidine triad protein
2102	 37.74	0	2180691..2181983	-	430	125624984	hisS	llmg_2217	-	histidyl-tRNA synthetase
2103	 32.99	0	2182296..2183456	-	386	125624985	-	llmg_2218	-	hypothetical protein
2104	 33.33	0	2183700..2184023	-	107	125624986	-	llmg_2219	-	hypothetical protein
2105	 39.74	+1	2184088..2184165	-	25	125624987	-	llmg_2220	-	hypothetical protein
2106	 31.30	-1	2184552..2184896	-	114	125624988	-	llmg_2221	-	hypothetical protein
2107	 36.73	0	2185006..2185329	-	107	125624989	-	llmg_2222	-	hypothetical protein
2108	 38.10	0	2185333..2186193	-	286	125624990	-	llmg_2223	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.