IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1954	 35.88	0	2046900..2048000	-	366	125624836	-	llmg_2064	-	oxidoreductase
1955	 34.75	0	2048138..2048983	-	281	125624837	-	llmg_2065	-	aldo/keto reductase family oxidoreductase
1956	 34.24	0	2048995..2050320	-	441	125624838	-	llmg_2066	-	multidrug resistance protein B
1957	 37.32	0	2050435..2051313	-	292	125624839	rlrB	llmg_2067	-	LysR family transcriptional regulator
1958	 30.86	-1	2051329..2051733	-	134	125624840	rmeA	llmg_2068	-	MerR family transcriptional regulator
1959	 36.92	0	2051813..2053177	-	454	125624841	pepC	llmg_2069	-	PepC protein
1960	 35.70	0	2053252..2053926	-	224	125624842	-	llmg_2070	-	hypothetical protein
1961	 34.52	0	2053944..2054447	-	167	125624843	-	llmg_2071	-	hypothetical protein
1962	 28.95	-1	2054401..2054514	-	37	125624844	-	llmg_2072	-	hypothetical protein
1963	 37.00	0	2054584..2055264	-	226	125624845	pfs	llmg_2073	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1964	 31.18	-1	2055292..2055570	-	92	125624846	-	llmg_2074	-	hypothetical protein
1965	 36.24	0	2055563..2056147	-	194	125624847	-	llmg_2075	-	ADP-ribose pyrophosphatase
1966	 38.20	0	2056248..2057624	-	458	125624848	glmU	llmg_2076	-	glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase
1967	 36.74	0	2057845..2058636	+	263	125624849	proC	llmg_2077	-	pyrroline-5-carboxylate reductase
1968	 40.74	+1	2058720..2059043	-	107	125624850	rpsO	llmg_2078	-	30S ribosomal protein S15
1969	 36.85	0	2059160..2061037	-	625	125624851	pknB	llmg_2079	-	serine/threonine protein kinase
1970	 38.10	0	2061037..2061813	-	258	125624852	pppL	llmg_2080	-	putative phosphoprotein phosphatase
1971	 35.61	0	2061936..2063210	-	424	125624853	sunL	llmg_2081	-	ribosomal RNA small subunit methyltransferase B
1972	 37.41	0	2064418..2065275	-	285	125624854	ps461	llmg_2082	-	bacteriophage lysin
1973	 35.93	0	2065277..2065738	-	153	125624855	ps460	llmg_2083	-	bacteriophage holin
1974	 35.34	0	2065754..2066101	-	115	125624856	ps459	llmg_2084	-	hypothetical protein
1975	 34.60	0	2066114..2066350	-	78	125624857	ps458	llmg_2085	-	hypothetical protein
1976	 40.81	+1	2066366..2071219	-	1617	125624858	ps457	llmg_2086	-	serine/threonine-rich protein precursor
1977	 38.41	0	2071216..2072298	-	360	125624859	ps455	llmg_2087	-	phage tail component
1978	 37.50	0	2072222..2072869	-	215	125624860	ps454	llmg_2088	-	hypothetical protein
1979	 36.38	0	2072866..2078013	-	1715	125624861	ps453	llmg_2089	-	phage tail component
1980	 31.18	-1	2078236..2078652	-	138	125624862	ps452	llmg_2090	-	phage tail component
1981	 37.54	0	2078797..2079390	-	197	125624863	ps451	llmg_2091	-	phage major tail protein
1982	 32.07	-1	2079421..2079816	-	131	125624864	ps450	llmg_2092	-	hypothetical protein
1983	 35.31	0	2079813..2080319	-	168	125624865	ps449	llmg_2093	-	hypothetical protein
1984	 33.33	0	2080321..2080671	-	116	125624866	ps448	llmg_2094	-	hypothetical protein
1985	 38.58	0	2080646..2080969	-	107	125624867	ps447	llmg_2095	-	hypothetical protein
1986	 37.04	0	2081170..2082384	-	404	125624868	ps446	llmg_2096	-	putative major head protein precursor
1987	 35.04	0	2082396..2083100	-	234	125624869	ps445	llmg_2097	-	hypothetical protein
1988	 35.64	0	2083146..2084318	-	390	125624870	ps444	llmg_2098	-	putative phage portal protein
1989	 27.62	-2	2084321..2084530	-	69	125624871	ps443	llmg_2099	-	putative head-tail joining protein
1990	 34.58	0	2084499..2086097	-	532	125624872	ps442	llmg_2100	-	putative terminase large subunit
1991	 32.83	0	2087720..2088118	-	132	125624873	ps440	llmg_2102	-	phage terminase small subunit
1992	 39.50	0	2088300..2088818	-	172	125624874	ps439	llmg_2103	-	hypothetical protein
1993	 29.90	-1	2088822..2089112	-	96	125624875	ps438	llmg_2104	-	hypothetical protein
1994	 36.32	0	2089489..2089890	-	133	125624876	ps437	llmg_2105	-	hypothetical protein
1995	 26.88	-2	2089973..2090158	-	61	125624877	ps436	llmg_2106	-	hypothetical protein
1996	 24.92	-2	2090155..2090463	-	102	125624878	ps435	llmg_2107	-	hypothetical protein
1997	 39.66	+1	2090646..2090819	-	57	125624879	ps434	llmg_2108	-	hypothetical protein
1998	 35.70	0	2090895..2091653	-	252	125624880	-	llmg_2109	-	putative transposase helper protein for IS712H
1999	 39.95	+1	2091665..2092888	-	407	125624881	tnp712	llmg_2110	-	transposase for insertion sequence element IS712H
2000	 35.24	0	2093448..2093657	+	69	125624882	ps431	llmg_2111	-	hypothetical protein
2001	 33.33	0	2093903..2094133	-	76	125624883	ps430	llmg_2112	-	no similarity
2002	 31.86	-1	2094152..2094490	-	112	125624884	ps429	llmg_2113	-	hypothetical protein
2003	 38.33	0	2094491..2094910	-	139	125624885	ps428	llmg_2114	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
2004	 34.95	0	2094907..2095464	-	185	125624886	ps427	llmg_2115	-	hypothetical protein
2005	 36.71	0	2095480..2095716	-	78	125624887	ps426	llmg_2116	-	hypothetical protein
2006	 31.31	-1	2095888..2096085	-	65	125624888	ps425	llmg_2117	-	hypothetical protein
2007	 33.71	0	2096086..2096352	-	88	125624889	ps424	llmg_2118	-	hypothetical protein
2008	 34.53	0	2096333..2096665	-	110	125624890	ps423	llmg_2119	-	hypothetical protein
2009	 36.84	0	2096680..2096964	-	94	125624891	ps422	llmg_2120	-	hypothetical protein
2010	 33.78	0	2096981..2097205	-	74	125624892	ps421	llmg_2121	-	hypothetical protein
2011	 31.67	-1	2097312..2097551	-	79	125624893	ps420	llmg_2122	-	hypothetical protein
2012	 33.87	0	2097548..2097922	-	124	125624894	ps419	llmg_2123	-	hypothetical protein
2013	 35.12	0	2097919..2098644	-	241	125624895	ps418	llmg_2124	-	hypothetical protein
2014	 33.97	0	2098644..2099426	-	260	125624896	ps417	llmg_2125	-	phage replication initiation protein
2015	 36.38	0	2099555..2099980	-	141	125624897	ps416	llmg_2126	-	single-strand binding protein ssB
2016	 31.11	-1	2099973..2100107	-	44	125624898	-	llmg_2127	-	putative translation initiation factor
2017	 41.13	+1	2100360..2100731	-	123	125624899	ps415	llmg_2128	-	putative translation initiation factor
2018	 36.62	0	2100740..2101135	-	131	125624900	ps414	llmg_2129	-	hypothetical protein
2019	 28.40	-2	2101234..2101476	-	80	125624901	ps413	llmg_2130	-	hypothetical protein
2020	 34.38	0	2101482..2101961	+	159	125624902	ps412	llmg_2131	-	hypothetical protein
2021	 34.31	0	2101954..2102157	-	67	125624903	ps411	llmg_2132	-	hypothetical protein
2022	 39.26	0	2102253..2102522	-	89	125624904	ps410	llmg_2133	-	hypothetical protein
2023	 37.15	0	2102536..2103294	-	252	125624905	ps409	llmg_2134	-	putative phage antirepressor protein
2024	 34.94	0	2103307..2103555	-	82	125624906	ps408	llmg_2135	-	putative Cro repressor
2025	 29.96	-1	2103660..2103896	+	78	125624907	ps407	llmg_2136	-	hypothetical protein
2026	 27.48	-2	2103868..2104089	-	73	125624908	ps406	llmg_2137	-	hypothetical protein
2027	 23.68	-2	2104187..2104300	+	37	125624909	ps405	llmg_2138	-	hypothetical protein
2028	 35.54	0	2104945..2105442	+	165	125624910	ps404	llmg_2139	-	cI-like repressor
2029	 34.48	0	2105448..2105882	+	144	125624911	ps403	llmg_2140	-	hypothetical protein
2030	 36.31	0	2105896..2106231	+	111	125624912	ps402	llmg_2141	-	hypothetical protein
2031	 33.66	0	2106266..2107480	+	404	125624913	ps401	llmg_2142	-	phage integrase
2032	 37.28	0	2107775..2108281	-	168	125624914	-	llmg_2143	-	putative 20-kDa protein
2033	 34.92	0	2108291..2108479	-	62	125624915	-	llmg_2144	-	hypothetical protein
2034	 31.37	-1	2108490..2109050	-	186	125624916	-	llmg_2145	-	hypothetical protein
2035	 41.56	+1	2109078..2109320	-	80	125624917	-	llmg_2146	-	hypothetical protein
2036	 39.20	0	2109555..2110526	-	323	125624918	fmt	llmg_2147	-	methionyl-tRNA formyltransferase
2037	 34.19	0	2110523..2110987	-	154	125624919	-	llmg_2148	-	hypothetical protein
2038	 35.82	0	2110953..2111474	-	173	125624920	-	llmg_2149	-	putative Nudix hydrolase
2039	 31.47	-1	2111488..2111862	-	124	125624921	-	llmg_2150	-	hypothetical protein
2040	 35.88	0	2111849..2112595	-	248	125624922	-	llmg_2151	-	hypothetical protein
2041	 37.72	0	2112728..2113069	-	113	125624923	-	llmg_2152	-	hypothetical protein
2042	 37.98	0	2113093..2115438	-	781	125624924	priA	llmg_2153	-	primosome assembly protein PriA
2043	 37.57	0	2115615..2115968	-	117	125624925	rpoZ	llmg_2154	-	DNA-directed RNA polymerase subunit omega
2044	 37.86	0	2116037..2116654	-	205	125624926	gmk	llmg_2155	-	guanylate kinase
2045	 39.97	+1	2116803..2118398	-	531	125624927	-	llmg_2156	-	phosphodiesterase
2046	 37.82	0	2118632..2119345	-	237	125624928	nagB2	llmg_2157	-	putative 6-phosphogluconolactonase
2047	 38.71	0	2119449..2119541	-	30	125624929	-	llmg_2158	-	hypothetical protein
2048	 38.71	0	2119619..2119711	-	30	125624930	-	llmg_2159	-	hypothetical protein
2049	 41.08	+1	2119789..2120988	-	399	125624931	metK	llmg_2160	-	S-adenosylmethionine synthetase
2050	 37.69	0	2121533..2122726	-	397	125624932	cfa	llmg_2161	-	cyclopropane-fatty-acyl-phospholipid synthase
2051	 35.06	0	2122883..2123635	+	250	125624933	birA2	llmg_2162	-	acetyl-CoA carboxylase ligase / biotin operon repressor bifunctional protein
2052	 39.57	0	2123763..2124227	-	154	125624934	-	llmg_2163	-	hypothetical protein
2053	 32.70	0	2124563..2125675	-	370	125624935	-	llmg_2164	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.