IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1875	 38.72	0	1960958..1961644	-	228	125624757	gltP	llmg_1979	-	glutamate ABC transporter permease protein
1876	 34.32	0	1961791..1962699	-	302	125624758	-	llmg_1980	-	hypothetical protein
1877	 40.76	+1	1962823..1966446	-	1207	125624759	rpoC	llmg_1981	-	DNA-directed RNA polymerase subunit beta'
1878	 41.63	+1	1966555..1970145	-	1196	125624760	rpoB	llmg_1982	-	DNA-directed RNA polymerase subunit beta
1879	 29.83	-1	1970414..1971013	-	199	125624761	codZ	llmg_1983	-	CodY family transcriptional regulator
1880	 34.52	0	1971249..1971923	+	224	125624762	-	llmg_1984	-	transcriptional regulator
1881	 36.68	0	1972038..1973921	+	627	125624763	pepO2	llmg_1985	-	putative neutral endopeptidase O2
1882	 40.20	+1	1973970..1974275	-	101	125624764	-	llmg_1986	-	hypothetical protein
1883	 38.83	0	1974345..1976018	-	557	125624765	-	llmg_1988	-	hypothetical protein
1884	 36.78	0	1976229..1977680	+	483	125624766	murE	llmg_1989	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1885	 34.48	0	1977762..1978022	-	86	125624767	-	llmg_1990	-	hypothetical protein
1886	 40.66	+1	1978043..1979065	-	340	125624768	adhA	llmg_1991	-	alcohol dehydrogenase
1887	 38.73	0	1979285..1981063	+	592	125624769	recQ	llmg_1992	-	ATP-dependent DNA helicase RecQ
1888	 37.40	0	1981100..1982623	-	507	125624770	-	llmg_1993	-	transporter
1889	 37.28	0	1982905..1984146	-	413	125624771	pepT	llmg_1994	-	peptidase T
1890	 32.08	-1	1984175..1984972	-	265	125624772	-	llmg_1995	-	hypothetical protein
1891	 36.72	0	1984972..1985916	-	314	125624773	ppa	llmg_1996	-	putative manganese-dependent inorganic pyrophosphatase
1892	 36.62	0	1986117..1986908	-	263	125624774	pflA	llmg_1997	-	pyruvate-formate lyase activating enzyme
1893	 37.44	0	1987127..1988464	-	445	125624775	-	llmg_1999	-	hypothetical protein
1894	 32.53	0	1988584..1989699	-	371	125624776	-	llmg_2000	-	putative permease
1895	 35.05	0	1990003..1990467	-	154	125624777	-	llmg_2002	-	hypothetical protein
1896	 30.35	-1	1990464..1991033	-	189	125624778	-	llmg_2003	-	UDP-glucose 4-epimerase
1897	 37.31	0	1991280..1991732	+	150	125624779	-	llmg_2004	-	hypothetical protein
1898	 38.13	0	1991789..1992226	-	145	125624780	-	llmg_2005	-	putative cell wall hydrolase
1899	 30.27	-1	1992275..1992862	+	195	125624781	-	llmg_2006	-	hypothetical protein
1900	 35.05	0	1992989..1993570	-	193	125624782	-	llmg_2007	-	hypothetical protein
1901	 40.25	+1	1993652..1996483	-	943	125624783	uvrA	llmg_2008	-	UvrABC system protein A
1902	 32.39	0	1996628..1997266	-	212	125624784	-	llmg_2009	-	hypothetical protein
1903	 34.68	0	1997373..1997669	+	98	125624785	-	llmg_2010	-	hypothetical protein
1904	 38.65	0	1997679..1999052	-	457	125624786	-	llmg_2011	-	putative amino acid permease
1905	 34.64	0	1999452..2000369	-	305	125624787	-	llmg_2012	-	hypothetical protein
1906	 35.69	0	2000399..2001034	-	211	125624788	thiN	llmg_2013	-	thiamin pyrophosphokinase
1907	 35.34	0	2001031..2001378	-	115	125624789	-	llmg_2014	-	hypothetical protein
1908	 37.33	0	2001410..2001859	-	149	125624790	-	llmg_2015	-	hypothetical protein
1909	 33.91	0	2002053..2002571	+	172	125624791	-	llmg_2016	-	hypothetical protein
1910	 37.72	0	2002619..2003962	-	447	125624792	asnC	llmg_2017	-	asparaginyl-tRNA synthetase
1911	 30.77	-1	2004010..2004321	-	103	125624793	-	llmg_2018	-	hypothetical protein
1912	 37.65	0	2004314..2005495	-	393	125624794	aspB	llmg_2019	-	aspartate aminotransferase
1913	 36.04	0	2005492..2005935	-	147	125624795	-	llmg_2020	-	hypothetical protein
1914	 35.14	0	2006071..2008446	-	791	125624796	dinG	llmg_2021	-	ATP-dependent helicase dinG-like protein
1915	 18.70	-2	2008550..2008672	+	40	125624797	-	llmg_2022	-	hypothetical protein
1916	 40.87	+1	2008694..2009131	+	145	125624798	-	llmg_2023	-	universal stress protein A
1917	 38.44	0	2009303..2011105	-	600	125624799	oppA2	llmg_2024	-	oligopeptide-binding protein oppA2 precursor
1918	 38.87	0	2011218..2012102	-	294	125624800	oppC2	llmg_2025	-	oligopeptide transport system permease protein oppC2
1919	 41.04	+1	2012112..2013071	-	319	125624801	oppB2	llmg_2026	-	peptide transport system permease protein oppB2
1920	 41.94	+1	2015238..2015597	-	119	125624802	rplT	llmg_2029	-	50S ribosomal protein L20
1921	 43.78	+2	2015861..2016061	-	66	125624803	rpmI	llmg_2030	-	50S ribosomal protein L35
1922	 38.25	0	2016189..2016839	-	216	125624804	infC	llmg_2031	-	translation initiation factor IF-3
1923	 37.21	0	2017144..2017272	+	42	125624805	-	llmg_2032	-	hypothetical protein
1924	 31.51	-1	2017303..2017851	+	182	125624806	-	llmg_2033	-	hypothetical protein
1925	 32.17	-1	2017879..2018565	-	228	125624807	-	llmg_2034	-	HAD superfamily hydrolase
1926	 40.04	+1	2018737..2020614	-	625	125624808	gidA	llmg_2035	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1927	 33.33	0	2020999..2021562	-	187	125624809	-	llmg_2036	-	hypothetical protein
1928	 35.77	0	2021695..2022063	-	122	125624810	-	llmg_2037	-	hypothetical protein
1929	 40.00	+1	2022177..2022596	-	139	125624811	-	llmg_2039	-	ribonuclease III
1930	 36.30	0	2022571..2023917	-	448	125624812	cysS	llmg_2040	-	cysteinyl-tRNA synthetase
1931	 33.33	0	2023930..2024523	-	197	125624813	-	llmg_2041	-	hypothetical protein
1932	 45.17	+2	2024537..2025136	-	199	125624814	cysE	llmg_2042	-	putative serine acetyltransferase
1933	 32.94	0	2025242..2026012	-	256	125624815	-	llmg_2043	-	hypothetical protein
1934	 40.20	+1	2026280..2028580	-	766	125624816	pnpA	llmg_2044	-	polynucleotide phosphorylase/polyadenylase
1935	 37.70	0	2028861..2030006	-	381	125624817	prsA	llmg_2045	-	hypothetical protein
1936	 38.41	0	2030371..2031336	+	321	125624818	prsB	llmg_2046	-	ribose-phosphate pyrophosphokinase
1937	 33.33	0	2031441..2031872	-	143	125624819	-	llmg_2047	-	universal stress protein E
1938	 35.60	0	2032415..2033296	+	293	125624820	nifS	llmg_2048	-	putative iron-sulfur cofactor synthesis protein
1939	 28.99	-1	2033322..2033666	+	114	125624821	-	llmg_2049	-	hypothetical protein
1940	 44.53	+2	2033755..2034942	-	395	125624822	tufA	llmg_2050	-	elongation factor Tu
1941	 33.88	0	2035186..2035368	+	60	125624823	-	llmg_2051	-	hypothetical protein
1942	 36.75	0	2035427..2035543	+	38	125624824	-	llmg_2052	-	hypothetical protein
1943	 38.30	0	2035603..2038401	-	932	125624825	ileS	llmg_2053	-	isoleucyl-tRNA synthetase
1944	 34.75	0	2038605..2038745	+	46	125624826	-	llmg_2054	-	hypothetical protein
1945	 33.01	0	2038848..2039783	-	311	125624827	-	llmg_2055	-	hypothetical protein
1946	 33.06	0	2039840..2040559	-	239	125624828	-	llmg_2056	-	hypothetical protein
1947	 29.35	-1	2040628..2040903	-	91	125624829	-	llmg_2057	-	hypothetical protein
1948	 41.29	+1	2040903..2041493	-	196	125624830	-	llmg_2058	-	Ycf50-like protein
1949	 32.45	0	2041527..2042204	-	225	125624831	-	llmg_2059	-	hypothetical protein
1950	 40.48	+1	2042201..2043460	-	419	125624832	ftsZ	llmg_2060	-	cell division protein FtsZ
1951	 40.99	+1	2043490..2044860	-	456	125624833	ftsA	llmg_2061	-	cell division protein ftsA
1952	 38.62	0	2045022..2045891	-	289	125624834	-	llmg_2062	-	hypothetical protein
1953	 37.72	0	2046008..2046736	-	242	125624835	trmH	llmg_2063	-	tRNA/rRNA methyltransferase
1954	 35.88	0	2046900..2048000	-	366	125624836	-	llmg_2064	-	oxidoreductase
1955	 34.75	0	2048138..2048983	-	281	125624837	-	llmg_2065	-	aldo/keto reductase family oxidoreductase
1956	 34.24	0	2048995..2050320	-	441	125624838	-	llmg_2066	-	multidrug resistance protein B
1957	 37.32	0	2050435..2051313	-	292	125624839	rlrB	llmg_2067	-	LysR family transcriptional regulator
1958	 30.86	-1	2051329..2051733	-	134	125624840	rmeA	llmg_2068	-	MerR family transcriptional regulator
1959	 36.92	0	2051813..2053177	-	454	125624841	pepC	llmg_2069	-	PepC protein
1960	 35.70	0	2053252..2053926	-	224	125624842	-	llmg_2070	-	hypothetical protein
1961	 34.52	0	2053944..2054447	-	167	125624843	-	llmg_2071	-	hypothetical protein
1962	 28.95	-1	2054401..2054514	-	37	125624844	-	llmg_2072	-	hypothetical protein
1963	 37.00	0	2054584..2055264	-	226	125624845	pfs	llmg_2073	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1964	 31.18	-1	2055292..2055570	-	92	125624846	-	llmg_2074	-	hypothetical protein
1965	 36.24	0	2055563..2056147	-	194	125624847	-	llmg_2075	-	ADP-ribose pyrophosphatase
1966	 38.20	0	2056248..2057624	-	458	125624848	glmU	llmg_2076	-	glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase
1967	 36.74	0	2057845..2058636	+	263	125624849	proC	llmg_2077	-	pyrroline-5-carboxylate reductase
1968	 40.74	+1	2058720..2059043	-	107	125624850	rpsO	llmg_2078	-	30S ribosomal protein S15
1969	 36.85	0	2059160..2061037	-	625	125624851	pknB	llmg_2079	-	serine/threonine protein kinase
1970	 38.10	0	2061037..2061813	-	258	125624852	pppL	llmg_2080	-	putative phosphoprotein phosphatase
1971	 35.61	0	2061936..2063210	-	424	125624853	sunL	llmg_2081	-	ribosomal RNA small subunit methyltransferase B
1972	 37.41	0	2064418..2065275	-	285	125624854	ps461	llmg_2082	-	bacteriophage lysin
1973	 35.93	0	2065277..2065738	-	153	125624855	ps460	llmg_2083	-	bacteriophage holin
1974	 35.34	0	2065754..2066101	-	115	125624856	ps459	llmg_2084	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.