IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1822	 37.77	0	1901770..1904271	-	833	125624704	recD	llmg_1922	-	exodeoxyribonuclease V alpha chain
1823	 39.73	+1	1904268..1904861	-	197	125624705	gpmC	llmg_1923	-	phosphoglycerate mutase
1824	 37.38	0	1904864..1905703	-	279	125624706	pheA	llmg_1924	-	prephenate dehydratase
1825	 34.36	0	1905705..1906193	-	162	125624707	aroK	llmg_1925	-	AroK protein
1826	 39.44	0	1906217..1907509	-	430	125624708	aroA	llmg_1926	-	3-phosphoshikimate 1-carboxyvinyltransferase
1827	 35.21	0	1907629..1908693	-	354	125624709	tyrA	llmg_1927	-	prephenate dehydrogenase
1828	 32.19	-1	1908697..1909572	-	291	125624710	kinG	llmg_1928	-	sensor histidine kinase
1829	 32.29	-1	1909559..1910230	-	223	125624711	llrG	llmg_1929	-	response regulator
1830	 32.21	-1	1910233..1911297	-	354	125624712	-	llmg_1930	-	hypothetical protein
1831	 36.41	0	1913487..1914266	-	259	125624713	-	llmg_1932	-	Sulfate/thiosulfate import ATP-binding protein cysA
1832	 33.05	0	1914460..1914816	-	118	125624714	-	llmg_1933	-	hypothetical protein
1833	 41.47	+1	1914939..1916105	-	388	125624715	aroC	llmg_1934	-	chorismate synthase
1834	 33.67	0	1916738..1917337	-	199	125624716	-	llmg_1936	-	hypothetical protein
1835	 38.31	0	1917709..1918632	-	307	125624717	-	llmg_1937	-	hypothetical protein
1836	 38.84	0	1918746..1919816	-	356	125624718	aroB	llmg_1938	-	3-dehydroquinate synthase
1837	 38.21	0	1919813..1920673	-	286	125624719	aroE	llmg_1939	-	shikimate 5-dehydrogenase
1838	 36.97	0	1920851..1921510	-	219	125624720	-	llmg_1941	-	hypothetical protein
1839	 37.53	0	1921895..1924039	+	714	125624721	glnP	llmg_1942	-	glutamine ABC transporter permease and substrate binding protein
1840	 37.90	0	1924062..1924805	+	247	125624722	glnQ	llmg_1943	-	glutamine ABC transporter ATP-binding protein
1841	 35.03	0	1924864..1926804	-	646	125624723	-	llmg_1944	-	hypothetical protein
1842	 38.03	0	1926908..1927333	-	141	125624724	atpC	llmg_1945	-	F0F1 ATP synthase subunit epsilon
1843	 41.96	+1	1927518..1928978	-	486	125624725	atpD	llmg_1946	-	F0F1 ATP synthase subunit beta
1844	 38.74	0	1929099..1929968	-	289	125624726	atpG	llmg_1947	-	F0F1 ATP synthase subunit gamma
1845	 41.12	+1	1929984..1931486	-	500	125624727	atpA	llmg_1948	-	F0F1 ATP synthase subunit alpha
1846	 32.95	0	1931675..1932202	-	175	125624728	atpH	llmg_1949	-	F0F1 ATP synthase subunit delta
1847	 40.24	+1	1932204..1932710	-	168	125624729	atpF	llmg_1950	-	F0F1 ATP synthase subunit B
1848	 40.62	+1	1932725..1933438	-	237	125624730	atpB	llmg_1951	-	F0F1 ATP synthase subunit A
1849	 48.15	+2	1933485..1933700	-	71	125624731	atpE	llmg_1952	-	F0F1 ATP synthase subunit C
1850	 36.94	0	1933883..1934659	-	258	125624732	estA	llmg_1953	-	tributyrin esterase
1851	 34.63	0	1937133..1937747	-	204	125624733	comEA	llmg_1955	-	putative competence protein
1852	 37.15	0	1937847..1939208	-	453	125624734	-	llmg_1956	-	hypothetical protein
1853	 38.26	0	1939205..1940137	-	310	125624735	-	llmg_1957	-	ABC transporter, ATP-binding protein
1854	 35.48	0	1940243..1940428	-	61	125624736	-	llmg_1958	-	hypothetical protein
1855	 36.72	0	1940757..1941317	-	186	125624737	bar	llmg_1959	-	phosphinothricin N-acetyltransferase
1856	 36.22	0	1941491..1942669	-	392	125624738	-	llmg_1960	-	hypothetical protein
1857	 35.92	0	1943058..1943714	-	218	125624739	tenA	llmg_1961	-	transcriptional activator TenA
1858	 29.39	-1	1943932..1944261	-	109	125624740	-	llmg_1962	-	hypothetical protein
1859	 34.26	0	1944255..1945226	-	323	125624741	birA1	llmg_1963	-	biotin--[acetyl-CoA-carboxylase] ligase and biotin operon repressor
1860	 35.61	0	1945232..1945801	-	189	125624742	bioY	llmg_1964	-	hypothetical protein
1861	 32.21	-1	1945938..1947182	+	414	125624743	-	llmg_1965	-	putative AMP-binding enzyme
1862	 37.88	0	1948940..1949203	-	87	125624744	-	llmg_1966	-	hypothetical protein
1863	 29.94	-1	1949203..1949673	-	156	125624745	-	llmg_1967	-	hypothetical protein
1864	 35.05	0	1949781..1950071	-	96	125624746	-	llmg_1968	-	hypothetical protein
1865	 36.31	0	1950420..1951832	-	470	125624747	sufB	llmg_1969	-	hypothetical protein
1866	 39.65	+1	1951928..1952386	-	152	125624748	nifU	llmg_1970	-	hypothetical protein
1867	 39.75	+1	1952520..1953002	-	160	125624749	-	llmg_1971	-	hypothetical protein
1868	 38.01	0	1953004..1954221	-	405	125624750	-	llmg_1972	-	hypothetical protein
1869	 38.58	0	1954221..1955477	-	418	125624751	-	llmg_1973	-	hypothetical protein
1870	 37.61	0	1955617..1956387	-	256	125624752	-	llmg_1974	-	ATP-dependent transporter
1871	 33.33	0	1956608..1957177	+	189	125624753	-	llmg_1975	-	hypothetical protein
1872	 37.93	0	1958065..1959390	-	441	125624754	-	llmg_1976	-	polysaccharide biosynthesis protein
1873	 34.90	0	1959393..1960094	-	233	125624755	-	llmg_1977	-	putative MecA-like protein
1874	 36.05	0	1960224..1960958	-	244	125624756	gltQ	llmg_1978	-	glutamate ABC transporter ATP-binding protein
1875	 38.72	0	1960958..1961644	-	228	125624757	gltP	llmg_1979	-	glutamate ABC transporter permease protein
1876	 34.32	0	1961791..1962699	-	302	125624758	-	llmg_1980	-	hypothetical protein
1877	 40.76	+1	1962823..1966446	-	1207	125624759	rpoC	llmg_1981	-	DNA-directed RNA polymerase subunit beta'
1878	 41.63	+1	1966555..1970145	-	1196	125624760	rpoB	llmg_1982	-	DNA-directed RNA polymerase subunit beta
1879	 29.83	-1	1970414..1971013	-	199	125624761	codZ	llmg_1983	-	CodY family transcriptional regulator
1880	 34.52	0	1971249..1971923	+	224	125624762	-	llmg_1984	-	transcriptional regulator
1881	 36.68	0	1972038..1973921	+	627	125624763	pepO2	llmg_1985	-	putative neutral endopeptidase O2
1882	 40.20	+1	1973970..1974275	-	101	125624764	-	llmg_1986	-	hypothetical protein
1883	 38.83	0	1974345..1976018	-	557	125624765	-	llmg_1988	-	hypothetical protein
1884	 36.78	0	1976229..1977680	+	483	125624766	murE	llmg_1989	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1885	 34.48	0	1977762..1978022	-	86	125624767	-	llmg_1990	-	hypothetical protein
1886	 40.66	+1	1978043..1979065	-	340	125624768	adhA	llmg_1991	-	alcohol dehydrogenase
1887	 38.73	0	1979285..1981063	+	592	125624769	recQ	llmg_1992	-	ATP-dependent DNA helicase RecQ
1888	 37.40	0	1981100..1982623	-	507	125624770	-	llmg_1993	-	transporter
1889	 37.28	0	1982905..1984146	-	413	125624771	pepT	llmg_1994	-	peptidase T
1890	 32.08	-1	1984175..1984972	-	265	125624772	-	llmg_1995	-	hypothetical protein
1891	 36.72	0	1984972..1985916	-	314	125624773	ppa	llmg_1996	-	putative manganese-dependent inorganic pyrophosphatase
1892	 36.62	0	1986117..1986908	-	263	125624774	pflA	llmg_1997	-	pyruvate-formate lyase activating enzyme
1893	 37.44	0	1987127..1988464	-	445	125624775	-	llmg_1999	-	hypothetical protein
1894	 32.53	0	1988584..1989699	-	371	125624776	-	llmg_2000	-	putative permease
1895	 35.05	0	1990003..1990467	-	154	125624777	-	llmg_2002	-	hypothetical protein
1896	 30.35	-1	1990464..1991033	-	189	125624778	-	llmg_2003	-	UDP-glucose 4-epimerase
1897	 37.31	0	1991280..1991732	+	150	125624779	-	llmg_2004	-	hypothetical protein
1898	 38.13	0	1991789..1992226	-	145	125624780	-	llmg_2005	-	putative cell wall hydrolase
1899	 30.27	-1	1992275..1992862	+	195	125624781	-	llmg_2006	-	hypothetical protein
1900	 35.05	0	1992989..1993570	-	193	125624782	-	llmg_2007	-	hypothetical protein
1901	 40.25	+1	1993652..1996483	-	943	125624783	uvrA	llmg_2008	-	UvrABC system protein A
1902	 32.39	0	1996628..1997266	-	212	125624784	-	llmg_2009	-	hypothetical protein
1903	 34.68	0	1997373..1997669	+	98	125624785	-	llmg_2010	-	hypothetical protein
1904	 38.65	0	1997679..1999052	-	457	125624786	-	llmg_2011	-	putative amino acid permease
1905	 34.64	0	1999452..2000369	-	305	125624787	-	llmg_2012	-	hypothetical protein
1906	 35.69	0	2000399..2001034	-	211	125624788	thiN	llmg_2013	-	thiamin pyrophosphokinase
1907	 35.34	0	2001031..2001378	-	115	125624789	-	llmg_2014	-	hypothetical protein
1908	 37.33	0	2001410..2001859	-	149	125624790	-	llmg_2015	-	hypothetical protein
1909	 33.91	0	2002053..2002571	+	172	125624791	-	llmg_2016	-	hypothetical protein
1910	 37.72	0	2002619..2003962	-	447	125624792	asnC	llmg_2017	-	asparaginyl-tRNA synthetase
1911	 30.77	-1	2004010..2004321	-	103	125624793	-	llmg_2018	-	hypothetical protein
1912	 37.65	0	2004314..2005495	-	393	125624794	aspB	llmg_2019	-	aspartate aminotransferase
1913	 36.04	0	2005492..2005935	-	147	125624795	-	llmg_2020	-	hypothetical protein
1914	 35.14	0	2006071..2008446	-	791	125624796	dinG	llmg_2021	-	ATP-dependent helicase dinG-like protein
1915	 18.70	-2	2008550..2008672	+	40	125624797	-	llmg_2022	-	hypothetical protein
1916	 40.87	+1	2008694..2009131	+	145	125624798	-	llmg_2023	-	universal stress protein A
1917	 38.44	0	2009303..2011105	-	600	125624799	oppA2	llmg_2024	-	oligopeptide-binding protein oppA2 precursor
1918	 38.87	0	2011218..2012102	-	294	125624800	oppC2	llmg_2025	-	oligopeptide transport system permease protein oppC2
1919	 41.04	+1	2012112..2013071	-	319	125624801	oppB2	llmg_2026	-	peptide transport system permease protein oppB2
1920	 41.94	+1	2015238..2015597	-	119	125624802	rplT	llmg_2029	-	50S ribosomal protein L20
1921	 43.78	+2	2015861..2016061	-	66	125624803	rpmI	llmg_2030	-	50S ribosomal protein L35
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.