IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1766	 35.81	0	1838235..1839122	-	295	125624648	rmaB	llmg_1860	-	MarR family transcriptional regulator
1767	 35.19	0	1839456..1841177	-	573	125624649	cydD	llmg_1861	-	cytochrome D ABC transporter ATP binding and permease protein
1768	 36.15	0	1841177..1842952	-	591	125624650	cydC	llmg_1862	-	cytochrome D ABC transporter ATP binding and permease protein
1769	 37.55	0	1843151..1844146	-	331	125624651	cydB	llmg_1863	-	cytochrome d ubiquinol oxidase, subunit II
1770	 38.89	0	1844146..1845621	-	491	125624652	cydA	llmg_1864	-	cytochrome bd-I ubiquinol oxidase subunit I
1771	 38.35	0	1846343..1847836	-	497	125624653	dtpT	llmg_1865	-	di-/tripeptide transporter
1772	 27.00	-2	1848372..1848671	-	99	125624654	-	llmg_1866	-	hypothetical protein
1773	 38.00	0	1848710..1848859	-	49	125624655	-	llmg_1867	-	hypothetical protein
1774	 32.95	0	1848959..1849216	-	85	125624656	-	llmg_1868	-	HTH-type transcriptional regulator
1775	 33.94	0	1849292..1851094	-	600	125624657	apu	llmg_1869	-	amylopullulanase
1776	 29.93	-1	1851191..1851337	+	48	125624658	-	llmg_1870	-	hypothetical protein
1777	 35.46	0	1851324..1853726	-	800	125624659	glgP	llmg_1871	-	glycogen phosphorylase
1778	 35.23	0	1853810..1855282	-	490	125624660	glgA	llmg_1872	-	glycogen synthase
1779	 31.93	-1	1855336..1856475	-	379	125624661	glgD	llmg_1873	-	glucose-1-phosphate adenylyltransferase
1780	 36.31	0	1856465..1857607	-	380	125624662	glgC	llmg_1874	-	glucose-1-phosphate adenylyltransferase
1781	 35.17	0	1861256..1862233	-	325	125624663	nusB	llmg_1878	-	transcription termination protein nusB
1782	 37.81	0	1862226..1862627	-	133	125624664	-	llmg_1879	-	hypothetical protein
1783	 35.84	0	1862774..1863331	-	185	125624665	efp	llmg_1880	-	elongation factor P
1784	 36.36	0	1863463..1864521	-	352	125624666	pepP	llmg_1881	-	aminopeptidase P
1785	 36.95	0	1864629..1865513	-	294	125624667	ksgA	llmg_1882	-	dimethyladenosine transferase
1786	 35.65	0	1865644..1866204	-	186	125624668	-	llmg_1883	-	hypothetical protein
1787	 30.52	-1	1866182..1866715	-	177	125624669	flaR	llmg_1884	-	DNA topology modulation protein FlaR, putative
1788	 36.69	0	1866749..1867522	-	257	125624670	tatD	llmg_1885	-	putative deoxyribonuclease
1789	 30.09	-1	1867667..1868806	-	379	125624671	intTn5276	llmg_1886	-	IntTn5276 protein
1790	 26.50	-2	1868889..1869122	-	77	125624672	xisTn5276	llmg_1887	-	putative Tn5276 excisionase
1791	 29.27	-1	1869149..1869640	-	163	125624673	ardA	llmg_1888	-	ArdA protein
1792	 31.72	-1	1869664..1870158	-	164	125624674	-	llmg_1889	-	hypothetical protein
1793	 43.01	+1	1870253..1870531	-	92	125624675	isp2	llmg_1890	-	hypothetical protein
1794	 38.98	0	1872289..1873050	+	253	125624676	tnp904	llmg_1893	-	transposase for insertion sequence IS904H
1795	 34.71	0	1873268..1873849	+	193	125624677	-	llmg_1894	-	phosphoglycerate mutase family protein
1796	 37.61	0	1873877..1874530	-	217	125624678	phoU	llmg_1895	-	phosphate transport system regulator phoU
1797	 37.27	0	1874773..1875534	-	253	125624679	pstA	llmg_1896	-	phosphate ABC transporter ATP-binding protein
1798	 38.52	0	1875742..1876551	-	269	125624680	pstB	llmg_1897	-	phosphate ABC transporter ATP-binding protein
1799	 42.84	+1	1876584..1877477	-	297	125624681	pstC	llmg_1898	-	phosphate transport system permease protein pstC
1800	 41.99	+1	1877477..1878400	-	307	125624682	pstD	llmg_1899	-	phosphate transport system permease protein pstD
1801	 37.32	0	1878541..1879392	-	283	125624683	pstE	llmg_1900	-	phosphate transport substrate binding protein pstE
1802	 38.68	0	1879732..1880628	-	298	125624684	pstF	llmg_1901	-	phosphate transport substrate binding protein pstF
1803	 36.97	0	1880841..1881308	-	155	125624685	smpB	llmg_1902	-	SsrA-binding protein
1804	 35.64	0	1881373..1881675	-	100	125624686	-	llmg_1903	-	putative transcriptional regulator
1805	 35.46	0	1881777..1882388	+	203	125624687	-	llmg_1904	-	putative nitroreductase
1806	 35.46	0	1882378..1882941	-	187	125624688	-	llmg_1905	-	putative esterase
1807	 38.37	0	1883038..1885656	-	872	125624689	alaS	llmg_1906	-	alanyl-tRNA synthetase
1808	 35.28	0	1885919..1886845	-	308	125624690	pmpA	llmg_1907	-	foldase protein prsA precursor
1809	 36.22	0	1886991..1887683	-	230	125624691	-	llmg_1908	-	putative methyltransferase
1810	 33.89	0	1887686..1889491	-	601	125624692	pepF	llmg_1909	-	PepF protein
1811	 35.82	0	1890624..1891709	-	361	125624693	-	llmg_1911	-	hypothetical protein
1812	 39.22	0	1891862..1892710	-	282	125624694	-	llmg_1912	-	hypothetical protein
1813	 39.80	+1	1892919..1894340	-	473	125624695	pbuO	llmg_1913	-	xanthine/uracil/vitamin C permease
1814	 37.99	0	1894647..1895483	+	278	125624696	-	llmg_1914	-	hypothetical protein
1815	 36.84	0	1895665..1896435	+	256	125624697	-	llmg_1915	-	putative Fe-S oxidoreductase
1816	 42.16	+1	1896445..1897917	+	490	125624698	-	llmg_1916	-	putative electron transport protein
1817	 38.60	0	1897920..1898603	+	227	125624699	-	llmg_1917	-	hypothetical protein
1818	 35.99	0	1898680..1899393	-	237	125624700	-	llmg_1918	-	hypothetical protein
1819	 34.21	0	1899507..1900421	-	304	125624701	-	llmg_1919	-	hypothetical protein
1820	 38.99	0	1900601..1901113	-	170	125624702	-	llmg_1920	-	hypothetical protein
1821	 39.32	0	1901443..1901676	+	77	125624703	rpsT	llmg_1921	-	30S ribosomal protein S20
1822	 37.77	0	1901770..1904271	-	833	125624704	recD	llmg_1922	-	exodeoxyribonuclease V alpha chain
1823	 39.73	+1	1904268..1904861	-	197	125624705	gpmC	llmg_1923	-	phosphoglycerate mutase
1824	 37.38	0	1904864..1905703	-	279	125624706	pheA	llmg_1924	-	prephenate dehydratase
1825	 34.36	0	1905705..1906193	-	162	125624707	aroK	llmg_1925	-	AroK protein
1826	 39.44	0	1906217..1907509	-	430	125624708	aroA	llmg_1926	-	3-phosphoshikimate 1-carboxyvinyltransferase
1827	 35.21	0	1907629..1908693	-	354	125624709	tyrA	llmg_1927	-	prephenate dehydrogenase
1828	 32.19	-1	1908697..1909572	-	291	125624710	kinG	llmg_1928	-	sensor histidine kinase
1829	 32.29	-1	1909559..1910230	-	223	125624711	llrG	llmg_1929	-	response regulator
1830	 32.21	-1	1910233..1911297	-	354	125624712	-	llmg_1930	-	hypothetical protein
1831	 36.41	0	1913487..1914266	-	259	125624713	-	llmg_1932	-	Sulfate/thiosulfate import ATP-binding protein cysA
1832	 33.05	0	1914460..1914816	-	118	125624714	-	llmg_1933	-	hypothetical protein
1833	 41.47	+1	1914939..1916105	-	388	125624715	aroC	llmg_1934	-	chorismate synthase
1834	 33.67	0	1916738..1917337	-	199	125624716	-	llmg_1936	-	hypothetical protein
1835	 38.31	0	1917709..1918632	-	307	125624717	-	llmg_1937	-	hypothetical protein
1836	 38.84	0	1918746..1919816	-	356	125624718	aroB	llmg_1938	-	3-dehydroquinate synthase
1837	 38.21	0	1919813..1920673	-	286	125624719	aroE	llmg_1939	-	shikimate 5-dehydrogenase
1838	 36.97	0	1920851..1921510	-	219	125624720	-	llmg_1941	-	hypothetical protein
1839	 37.53	0	1921895..1924039	+	714	125624721	glnP	llmg_1942	-	glutamine ABC transporter permease and substrate binding protein
1840	 37.90	0	1924062..1924805	+	247	125624722	glnQ	llmg_1943	-	glutamine ABC transporter ATP-binding protein
1841	 35.03	0	1924864..1926804	-	646	125624723	-	llmg_1944	-	hypothetical protein
1842	 38.03	0	1926908..1927333	-	141	125624724	atpC	llmg_1945	-	F0F1 ATP synthase subunit epsilon
1843	 41.96	+1	1927518..1928978	-	486	125624725	atpD	llmg_1946	-	F0F1 ATP synthase subunit beta
1844	 38.74	0	1929099..1929968	-	289	125624726	atpG	llmg_1947	-	F0F1 ATP synthase subunit gamma
1845	 41.12	+1	1929984..1931486	-	500	125624727	atpA	llmg_1948	-	F0F1 ATP synthase subunit alpha
1846	 32.95	0	1931675..1932202	-	175	125624728	atpH	llmg_1949	-	F0F1 ATP synthase subunit delta
1847	 40.24	+1	1932204..1932710	-	168	125624729	atpF	llmg_1950	-	F0F1 ATP synthase subunit B
1848	 40.62	+1	1932725..1933438	-	237	125624730	atpB	llmg_1951	-	F0F1 ATP synthase subunit A
1849	 48.15	+2	1933485..1933700	-	71	125624731	atpE	llmg_1952	-	F0F1 ATP synthase subunit C
1850	 36.94	0	1933883..1934659	-	258	125624732	estA	llmg_1953	-	tributyrin esterase
1851	 34.63	0	1937133..1937747	-	204	125624733	comEA	llmg_1955	-	putative competence protein
1852	 37.15	0	1937847..1939208	-	453	125624734	-	llmg_1956	-	hypothetical protein
1853	 38.26	0	1939205..1940137	-	310	125624735	-	llmg_1957	-	ABC transporter, ATP-binding protein
1854	 35.48	0	1940243..1940428	-	61	125624736	-	llmg_1958	-	hypothetical protein
1855	 36.72	0	1940757..1941317	-	186	125624737	bar	llmg_1959	-	phosphinothricin N-acetyltransferase
1856	 36.22	0	1941491..1942669	-	392	125624738	-	llmg_1960	-	hypothetical protein
1857	 35.92	0	1943058..1943714	-	218	125624739	tenA	llmg_1961	-	transcriptional activator TenA
1858	 29.39	-1	1943932..1944261	-	109	125624740	-	llmg_1962	-	hypothetical protein
1859	 34.26	0	1944255..1945226	-	323	125624741	birA1	llmg_1963	-	biotin--[acetyl-CoA-carboxylase] ligase and biotin operon repressor
1860	 35.61	0	1945232..1945801	-	189	125624742	bioY	llmg_1964	-	hypothetical protein
1861	 32.21	-1	1945938..1947182	+	414	125624743	-	llmg_1965	-	putative AMP-binding enzyme
1862	 37.88	0	1948940..1949203	-	87	125624744	-	llmg_1966	-	hypothetical protein
1863	 29.94	-1	1949203..1949673	-	156	125624745	-	llmg_1967	-	hypothetical protein
1864	 35.05	0	1949781..1950071	-	96	125624746	-	llmg_1968	-	hypothetical protein
1865	 36.31	0	1950420..1951832	-	470	125624747	sufB	llmg_1969	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.