IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1700	 39.43	0	1770497..1773349	-	950	125624582	infB	llmg_1792	-	translation initiation factor IF-2
1701	 34.64	0	1773370..1773675	-	101	125624583	-	llmg_1793	-	hypothetical protein
1702	 36.70	0	1773678..1774004	-	108	125624584	-	llmg_1794	-	hypothetical protein
1703	 38.64	0	1774170..1775318	-	382	125624585	nusA	llmg_1796	-	transcription elongation factor NusA
1704	 35.44	0	1775486..1775959	-	157	125624586	-	llmg_1797	-	hypothetical protein
1705	 33.83	0	1776233..1776637	+	134	125624587	lrgA	llmg_1798	-	LrgA family protein
1706	 40.77	+1	1776656..1777354	+	232	125624588	lrgB	llmg_1799	-	LrgB family protein
1707	 37.41	0	1777419..1778129	-	236	125624589	-	llmg_1800	-	hypothetical protein
1708	 35.74	0	1778143..1779432	-	429	125624590	srtC	llmg_1801	-	sortase SrtC
1709	 44.02	+2	1779483..1781306	-	607	125624591	-	llmg_1802	-	hypothetical protein
1710	 45.55	+2	1781422..1784949	-	1175	125624592	-	llmg_1803	-	hypothetical protein
1711	 30.98	-1	1785382..1786230	-	282	125624593	-	llmg_1804	-	Rgg family transcriptional regulator
1712	 39.51	0	1786335..1787645	-	436	125624594	engA	llmg_1805	-	GTP-binding protein EngA
1713	 32.56	0	1787757..1788272	-	171	125624595	-	llmg_1806	-	hypothetical protein
1714	 36.79	0	1788380..1789102	-	240	125624596	-	llmg_1807	-	nitroreductase family protein
1715	 35.83	0	1789095..1789976	-	293	125624597	dnaI	llmg_1808	-	primosomal protein DnaI
1716	 36.82	0	1789976..1791151	-	391	125624598	dnaB	llmg_1809	-	chromosome replication initiation / membrane attachment protein
1717	 36.91	0	1791234..1791680	-	148	125624599	-	llmg_1810	-	transcriptional regulator NrdR
1718	 36.70	0	1791868..1792521	-	217	125624600	trmB	llmg_1811	-	tRNA (guanine-N(7))-methyltransferase
1719	 36.56	0	1792647..1793420	-	257	125624601	-	llmg_1812	-	putative kinase
1720	 33.33	0	1793489..1793746	-	85	125624602	-	llmg_1813	-	hypothetical protein
1721	 39.62	+1	1793972..1795339	-	455	125624603	dnaC	llmg_1814	-	DnaC protein
1722	 35.54	0	1795345..1795797	-	150	125624604	rplI	llmg_1815	-	50S ribosomal protein L9
1723	 34.96	0	1795794..1797758	-	654	125624605	-	llmg_1816	-	RecJ-like protein
1724	 36.74	0	1797851..1798555	-	234	125624606	-	llmg_1817	-	putative beta-phosphoglucomutase
1725	 31.06	-1	1798647..1799129	+	160	125624607	rmaA	llmg_1818	-	MarR family transcriptional regulator
1726	 38.31	0	1799113..1799976	+	287	125624608	-	llmg_1819	-	hypothetical protein
1727	 38.36	0	1800198..1801550	+	450	125624609	thrA	llmg_1820	-	aspartate kinase
1728	 31.69	-1	1801588..1801770	-	60	125624610	-	llmg_1821	-	hypothetical protein
1729	 38.95	0	1801934..1803322	-	462	125624611	-	llmg_1822	-	hypothetical protein
1730	 38.39	0	1803517..1804485	+	322	125624612	ansB	llmg_1823	-	L-asparaginase
1731	 28.12	-2	1804462..1804557	-	31	125624613	-	llmg_1824	-	hypothetical protein
1732	 36.90	0	1804587..1805510	-	307	125624614	-	llmg_1825	-	hypothetical protein
1733	 39.19	0	1805605..1806885	-	426	125624615	-	llmg_1826	-	hypothetical protein
1734	 32.65	0	1806892..1807473	-	193	125624616	-	llmg_1827	-	putative acetyltransferase
1735	 35.85	0	1807726..1808877	+	383	125624617	menF	llmg_1828	-	menaquinone-specific isochorismate synthase
1736	 39.16	0	1808919..1810583	+	554	125624618	menD	llmg_1829	-	2-oxoglutarate decarboxylase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
1737	 39.09	0	1810573..1811388	+	271	125624619	menX	llmg_1830	-	menaquinone biosynthesis related protein
1738	 42.47	+1	1811711..1812553	+	280	125624620	menB	llmg_1831	-	naphthoate synthase
1739	 37.39	0	1812710..1814065	+	451	125624621	menE	llmg_1832	-	O-succinylbenzoic acid--CoA ligase
1740	 36.12	0	1814062..1815174	+	370	125624622	menC	llmg_1833	-	o-succinylbenzoate synthase
1741	 40.63	+1	1815577..1815987	+	136	125624623	-	llmg_1834	-	hypothetical protein
1742	 34.04	0	1815995..1816984	-	329	125624624	rliC	llmg_1835	-	LacI family transcription regulator
1743	 34.86	0	1817071..1819290	-	739	125624625	xylS	llmg_1836	-	alpha-xylosidase
1744	 28.35	-2	1819317..1819958	-	213	125624626	-	llmg_1837	-	hypothetical protein
1745	 38.13	0	1820036..1821598	-	520	125624627	-	llmg_1838	-	putative sugar ABC transporter substrate-binding protein
1746	 37.40	0	1821661..1822275	-	204	125624628	-	llmg_1839	-	putative sugar ABC transporter permease
1747	 36.55	0	1822453..1823292	-	279	125624629	tnp981	llmg_1840	-	transposase for insertion sequence element IS981O
1748	 36.40	0	1823304..1823564	-	86	125624630	-	llmg_1841	-	hypothetical protein
1749	 34.29	0	1823644..1823748	+	34	125624631	-	llmg_1842	-	hypothetical protein
1750	 41.24	+1	1824296..1824763	-	155	125624632	-	llmg_1843	-	hypothetical protein
1751	 37.17	0	1824764..1825702	-	312	125624633	-	llmg_1844	-	hypothetical protein
1752	 38.65	0	1825690..1826442	-	250	125624634	-	llmg_1845	-	metal-dependent hydrolase
1753	 35.82	0	1826765..1826965	-	66	125624635	cspB	llmg_1846	-	cold shock-like protein cspB
1754	 31.84	-1	1827234..1827434	-	66	125624636	cspA	llmg_1847	-	cold shock-like protein cspA
1755	 36.82	0	1827557..1827757	-	66	125624637	-	llmg_1848	-	hypothetical protein
1756	 36.67	0	1828098..1829207	-	369	125624638	metE2	llmg_1849	-	hypothetical protein
1757	 37.79	0	1829375..1830361	+	328	125624639	qor	llmg_1850	-	quinone oxidoreductase
1758	 36.65	0	1830390..1831052	-	220	125624640	-	llmg_1851	-	hypothetical protein
1759	 31.96	-1	1831263..1831481	+	72	125624641	-	llmg_1852	-	hypothetical protein
1760	 38.50	0	1831548..1833542	+	664	125624642	-	llmg_1853	-	ABC transporter ATP-binding and permease protein
1761	 38.29	0	1833817..1834461	+	214	125624643	apl	llmg_1854	-	alkaline phosphatase
1762	 37.33	0	1834775..1835149	+	124	125624644	-	llmg_1855	-	hypothetical protein
1763	 39.03	0	1835166..1836938	-	590	125624645	lmrA	llmg_1856	-	multidrug resistance ABC transporter ATP-binding and permease protein
1764	 33.33	0	1837030..1837368	-	112	125624646	-	llmg_1857	-	putative esterase
1765	 32.72	0	1837720..1838208	-	162	125624647	-	llmg_1859	-	putative flavodoxin
1766	 35.81	0	1838235..1839122	-	295	125624648	rmaB	llmg_1860	-	MarR family transcriptional regulator
1767	 35.19	0	1839456..1841177	-	573	125624649	cydD	llmg_1861	-	cytochrome D ABC transporter ATP binding and permease protein
1768	 36.15	0	1841177..1842952	-	591	125624650	cydC	llmg_1862	-	cytochrome D ABC transporter ATP binding and permease protein
1769	 37.55	0	1843151..1844146	-	331	125624651	cydB	llmg_1863	-	cytochrome d ubiquinol oxidase, subunit II
1770	 38.89	0	1844146..1845621	-	491	125624652	cydA	llmg_1864	-	cytochrome bd-I ubiquinol oxidase subunit I
1771	 38.35	0	1846343..1847836	-	497	125624653	dtpT	llmg_1865	-	di-/tripeptide transporter
1772	 27.00	-2	1848372..1848671	-	99	125624654	-	llmg_1866	-	hypothetical protein
1773	 38.00	0	1848710..1848859	-	49	125624655	-	llmg_1867	-	hypothetical protein
1774	 32.95	0	1848959..1849216	-	85	125624656	-	llmg_1868	-	HTH-type transcriptional regulator
1775	 33.94	0	1849292..1851094	-	600	125624657	apu	llmg_1869	-	amylopullulanase
1776	 29.93	-1	1851191..1851337	+	48	125624658	-	llmg_1870	-	hypothetical protein
1777	 35.46	0	1851324..1853726	-	800	125624659	glgP	llmg_1871	-	glycogen phosphorylase
1778	 35.23	0	1853810..1855282	-	490	125624660	glgA	llmg_1872	-	glycogen synthase
1779	 31.93	-1	1855336..1856475	-	379	125624661	glgD	llmg_1873	-	glucose-1-phosphate adenylyltransferase
1780	 36.31	0	1856465..1857607	-	380	125624662	glgC	llmg_1874	-	glucose-1-phosphate adenylyltransferase
1781	 35.17	0	1861256..1862233	-	325	125624663	nusB	llmg_1878	-	transcription termination protein nusB
1782	 37.81	0	1862226..1862627	-	133	125624664	-	llmg_1879	-	hypothetical protein
1783	 35.84	0	1862774..1863331	-	185	125624665	efp	llmg_1880	-	elongation factor P
1784	 36.36	0	1863463..1864521	-	352	125624666	pepP	llmg_1881	-	aminopeptidase P
1785	 36.95	0	1864629..1865513	-	294	125624667	ksgA	llmg_1882	-	dimethyladenosine transferase
1786	 35.65	0	1865644..1866204	-	186	125624668	-	llmg_1883	-	hypothetical protein
1787	 30.52	-1	1866182..1866715	-	177	125624669	flaR	llmg_1884	-	DNA topology modulation protein FlaR, putative
1788	 36.69	0	1866749..1867522	-	257	125624670	tatD	llmg_1885	-	putative deoxyribonuclease
1789	 30.09	-1	1867667..1868806	-	379	125624671	intTn5276	llmg_1886	-	IntTn5276 protein
1790	 26.50	-2	1868889..1869122	-	77	125624672	xisTn5276	llmg_1887	-	putative Tn5276 excisionase
1791	 29.27	-1	1869149..1869640	-	163	125624673	ardA	llmg_1888	-	ArdA protein
1792	 31.72	-1	1869664..1870158	-	164	125624674	-	llmg_1889	-	hypothetical protein
1793	 43.01	+1	1870253..1870531	-	92	125624675	isp2	llmg_1890	-	hypothetical protein
1794	 38.98	0	1872289..1873050	+	253	125624676	tnp904	llmg_1893	-	transposase for insertion sequence IS904H
1795	 34.71	0	1873268..1873849	+	193	125624677	-	llmg_1894	-	phosphoglycerate mutase family protein
1796	 37.61	0	1873877..1874530	-	217	125624678	phoU	llmg_1895	-	phosphate transport system regulator phoU
1797	 37.27	0	1874773..1875534	-	253	125624679	pstA	llmg_1896	-	phosphate ABC transporter ATP-binding protein
1798	 38.52	0	1875742..1876551	-	269	125624680	pstB	llmg_1897	-	phosphate ABC transporter ATP-binding protein
1799	 42.84	+1	1876584..1877477	-	297	125624681	pstC	llmg_1898	-	phosphate transport system permease protein pstC
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.