IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1649	 39.16	0	1721185..1723674	-	829	125624531	leuS	llmg_1741	-	leucyl-tRNA synthetase
1650	 30.95	-1	1723745..1724416	-	223	125624532	-	llmg_1742	-	putative regulator
1651	 41.13	+1	1724489..1725463	-	324	125624533	prsA	llmg_1743	-	ribose-phosphate pyrophosphokinase
1652	 36.16	0	1725640..1727019	-	459	125624534	ftsY	llmg_1744	-	signal recognition particle-docking protein
1653	 33.70	0	1727081..1727632	-	183	125624535	-	llmg_1745	-	hypothetical protein
1654	 31.85	-1	1727642..1728451	-	269	125624536	-	llmg_1746	-	putative hydrolase
1655	 36.31	0	1728858..1730168	+	436	125624537	-	llmg_1747	-	amino acid permease
1656	 34.25	0	1730218..1730979	-	253	125624538	-	llmg_1748	-	hypothetical protein
1657	 34.76	0	1730976..1732094	-	372	125624539	-	llmg_1749	-	hypothetical protein
1658	 34.06	0	1732185..1732595	-	136	125624540	-	llmg_1750	-	hypothetical protein
1659	 34.72	0	1732686..1734854	-	722	125624541	-	llmg_1751	-	alkaline phosphatase superfamily protein
1660	 35.94	0	1735096..1738620	-	1174	125624542	smc	llmg_1752	-	chromosome segregation protein smc
1661	 36.78	0	1738610..1739305	-	231	125624543	rnc	llmg_1753	-	ribonuclease III
1662	 33.03	0	1739480..1740481	-	333	125624544	argF	llmg_1754	-	ornithine carbamoyltransferase
1663	 37.56	0	1740509..1741360	-	283	125624545	argB	llmg_1755	-	acetylglutamate kinase
1664	 35.89	0	1741357..1742490	-	377	125624546	argD	llmg_1756	-	acetylornithine aminotransferase
1665	 38.29	0	1742503..1743693	-	396	125624547	argJ	llmg_1757	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1666	 34.12	0	1743705..1744727	-	340	125624548	argC	llmg_1758	-	N-acetyl-gamma-glutamyl-phosphate reductase
1667	 37.44	0	1744868..1745500	-	210	125624549	-	llmg_1759	-	putative NADH-flavin reductase
1668	 33.33	0	1745604..1746113	-	169	125624550	-	llmg_1760	-	hypothetical protein
1669	 36.75	0	1746125..1746241	+	38	125624551	-	llmg_1761	-	hypothetical protein
1670	 41.94	+1	1746516..1747247	-	243	125624552	fabG	llmg_1762	-	3-ketoacyl-(acyl-carrier-protein) reductase
1671	 42.50	+1	1747264..1747503	-	79	125624553	-	llmg_1763	-	hypothetical protein
1672	 35.95	0	1748021..1750009	-	662	125624554	metS	llmg_1764	-	MetS protein
1673	 40.09	+1	1750191..1751048	+	285	125624555	exoA	llmg_1765	-	3'-exo-deoxyribonuclease
1674	 35.30	0	1751137..1751694	+	185	125624556	-	llmg_1766	-	putative acetyltransferase
1675	 34.19	0	1751946..1752530	+	194	125624557	rdrA	llmg_1767	-	DeoR family transcriptional regulator
1676	 30.48	-1	1752697..1753047	-	116	125624558	-	llmg_1768	-	hypothetical protein
1677	 34.90	0	1753123..1753377	-	84	125624559	-	llmg_1769	-	hypothetical protein
1678	 37.90	0	1753404..1755047	-	547	125624560	noxC	llmg_1770	-	NADH oxidase
1679	 30.74	-1	1755044..1755352	-	102	125624561	-	llmg_1771	-	putative rhodanese-related sulfurtransferase
1680	 33.86	0	1755363..1755740	-	125	125624562	-	llmg_1772	-	putative rhodanese-related sulfurtransferase
1681	 33.33	0	1755797..1756036	-	79	125624563	-	llmg_1773	-	hypothetical protein
1682	 21.51	-2	1756038..1756130	-	30	125624564	-	llmg_1774	-	hypothetical protein
1683	 37.79	0	1756264..1757184	-	306	125624565	cysK	llmg_1775	-	O-acetylserine sulfhydrylase
1684	 37.18	0	1757399..1758541	-	380	125624566	metC	llmg_1776	-	cystathionine gamma-synthase/cystathionine beta-lyase
1685	 38.36	0	1758672..1759466	-	264	125624567	accA	llmg_1777	-	AccA protein
1686	 37.95	0	1759459..1760325	-	288	125624568	accD	llmg_1778	-	acetyl-CoA carboxylase subunit beta
1687	 38.96	0	1760411..1761778	-	455	125624569	accC	llmg_1779	-	acetyl-CoA carboxylase biotin carboxylase subunit
1688	 26.78	-2	1761771..1761953	-	60	125624570	-	llmg_1780	-	hypothetical protein
1689	 37.47	0	1762172..1762606	-	144	125624571	fabZ	llmg_1781	-	(3R)-hydroxymyristoyl-ACP dehydratase
1690	 38.46	0	1762733..1763200	-	155	125624572	accB	llmg_1782	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
1691	 40.89	+1	1763207..1764436	-	409	125624573	fabF	llmg_1783	-	3-oxoacyl-[acyl-carrier-protein] synthase II
1692	 36.61	0	1764477..1765208	-	243	125624574	fabG	llmg_1784	-	3-ketoacyl-(acyl-carrier-protein) reductase
1693	 37.13	0	1765337..1766257	-	306	125624575	fabD	llmg_1785	-	malonyl CoA-acyl carrier protein transacylase
1694	 35.59	0	1766543..1766764	-	73	125624576	acpP	llmg_1786	-	acyl carrier protein
1695	 39.47	0	1766945..1767922	-	325	125624577	fabH	llmg_1787	-	3-oxoacyl-(acyl carrier protein) synthase III
1696	 34.92	0	1767922..1768362	-	146	125624578	rmaG	llmg_1788	-	MarR family transcriptional regulator
1697	 37.34	0	1768769..1769716	-	315	125624579	pmi	llmg_1789	-	mannose-6-phosphate isomerase
1698	 27.22	-2	1769704..1769883	+	59	125624580	-	llmg_1790	-	hypothetical protein
1699	 35.56	0	1769892..1770251	-	119	125624581	rbfA	llmg_1791	-	ribosome-binding factor A
1700	 39.43	0	1770497..1773349	-	950	125624582	infB	llmg_1792	-	translation initiation factor IF-2
1701	 34.64	0	1773370..1773675	-	101	125624583	-	llmg_1793	-	hypothetical protein
1702	 36.70	0	1773678..1774004	-	108	125624584	-	llmg_1794	-	hypothetical protein
1703	 38.64	0	1774170..1775318	-	382	125624585	nusA	llmg_1796	-	transcription elongation factor NusA
1704	 35.44	0	1775486..1775959	-	157	125624586	-	llmg_1797	-	hypothetical protein
1705	 33.83	0	1776233..1776637	+	134	125624587	lrgA	llmg_1798	-	LrgA family protein
1706	 40.77	+1	1776656..1777354	+	232	125624588	lrgB	llmg_1799	-	LrgB family protein
1707	 37.41	0	1777419..1778129	-	236	125624589	-	llmg_1800	-	hypothetical protein
1708	 35.74	0	1778143..1779432	-	429	125624590	srtC	llmg_1801	-	sortase SrtC
1709	 44.02	+2	1779483..1781306	-	607	125624591	-	llmg_1802	-	hypothetical protein
1710	 45.55	+2	1781422..1784949	-	1175	125624592	-	llmg_1803	-	hypothetical protein
1711	 30.98	-1	1785382..1786230	-	282	125624593	-	llmg_1804	-	Rgg family transcriptional regulator
1712	 39.51	0	1786335..1787645	-	436	125624594	engA	llmg_1805	-	GTP-binding protein EngA
1713	 32.56	0	1787757..1788272	-	171	125624595	-	llmg_1806	-	hypothetical protein
1714	 36.79	0	1788380..1789102	-	240	125624596	-	llmg_1807	-	nitroreductase family protein
1715	 35.83	0	1789095..1789976	-	293	125624597	dnaI	llmg_1808	-	primosomal protein DnaI
1716	 36.82	0	1789976..1791151	-	391	125624598	dnaB	llmg_1809	-	chromosome replication initiation / membrane attachment protein
1717	 36.91	0	1791234..1791680	-	148	125624599	-	llmg_1810	-	transcriptional regulator NrdR
1718	 36.70	0	1791868..1792521	-	217	125624600	trmB	llmg_1811	-	tRNA (guanine-N(7))-methyltransferase
1719	 36.56	0	1792647..1793420	-	257	125624601	-	llmg_1812	-	putative kinase
1720	 33.33	0	1793489..1793746	-	85	125624602	-	llmg_1813	-	hypothetical protein
1721	 39.62	+1	1793972..1795339	-	455	125624603	dnaC	llmg_1814	-	DnaC protein
1722	 35.54	0	1795345..1795797	-	150	125624604	rplI	llmg_1815	-	50S ribosomal protein L9
1723	 34.96	0	1795794..1797758	-	654	125624605	-	llmg_1816	-	RecJ-like protein
1724	 36.74	0	1797851..1798555	-	234	125624606	-	llmg_1817	-	putative beta-phosphoglucomutase
1725	 31.06	-1	1798647..1799129	+	160	125624607	rmaA	llmg_1818	-	MarR family transcriptional regulator
1726	 38.31	0	1799113..1799976	+	287	125624608	-	llmg_1819	-	hypothetical protein
1727	 38.36	0	1800198..1801550	+	450	125624609	thrA	llmg_1820	-	aspartate kinase
1728	 31.69	-1	1801588..1801770	-	60	125624610	-	llmg_1821	-	hypothetical protein
1729	 38.95	0	1801934..1803322	-	462	125624611	-	llmg_1822	-	hypothetical protein
1730	 38.39	0	1803517..1804485	+	322	125624612	ansB	llmg_1823	-	L-asparaginase
1731	 28.12	-2	1804462..1804557	-	31	125624613	-	llmg_1824	-	hypothetical protein
1732	 36.90	0	1804587..1805510	-	307	125624614	-	llmg_1825	-	hypothetical protein
1733	 39.19	0	1805605..1806885	-	426	125624615	-	llmg_1826	-	hypothetical protein
1734	 32.65	0	1806892..1807473	-	193	125624616	-	llmg_1827	-	putative acetyltransferase
1735	 35.85	0	1807726..1808877	+	383	125624617	menF	llmg_1828	-	menaquinone-specific isochorismate synthase
1736	 39.16	0	1808919..1810583	+	554	125624618	menD	llmg_1829	-	2-oxoglutarate decarboxylase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
1737	 39.09	0	1810573..1811388	+	271	125624619	menX	llmg_1830	-	menaquinone biosynthesis related protein
1738	 42.47	+1	1811711..1812553	+	280	125624620	menB	llmg_1831	-	naphthoate synthase
1739	 37.39	0	1812710..1814065	+	451	125624621	menE	llmg_1832	-	O-succinylbenzoic acid--CoA ligase
1740	 36.12	0	1814062..1815174	+	370	125624622	menC	llmg_1833	-	o-succinylbenzoate synthase
1741	 40.63	+1	1815577..1815987	+	136	125624623	-	llmg_1834	-	hypothetical protein
1742	 34.04	0	1815995..1816984	-	329	125624624	rliC	llmg_1835	-	LacI family transcription regulator
1743	 34.86	0	1817071..1819290	-	739	125624625	xylS	llmg_1836	-	alpha-xylosidase
1744	 28.35	-2	1819317..1819958	-	213	125624626	-	llmg_1837	-	hypothetical protein
1745	 38.13	0	1820036..1821598	-	520	125624627	-	llmg_1838	-	putative sugar ABC transporter substrate-binding protein
1746	 37.40	0	1821661..1822275	-	204	125624628	-	llmg_1839	-	putative sugar ABC transporter permease
1747	 36.55	0	1822453..1823292	-	279	125624629	tnp981	llmg_1840	-	transposase for insertion sequence element IS981O
1748	 36.40	0	1823304..1823564	-	86	125624630	-	llmg_1841	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.