IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1611	 42.82	+1	1672592..1674109	-	505	125624493	-	llmg_1698	-	hypothetical protein
1612	 35.40	0	1674398..1675900	-	500	125624494	choS	llmg_1699	-	choline ABC transporter permease and substrate binding protein
1613	 35.84	0	1675897..1676814	-	305	125624495	choQ	llmg_1700	-	choline ABC transporter ATP binding protein
1614	 27.78	-2	1676817..1676960	+	47	125624496	-	llmg_1701	-	hypothetical protein
1615	 34.94	0	1676943..1678250	-	435	125624497	gshR	llmg_1702	-	glutathione reductase
1616	 31.70	-1	1678389..1678817	-	142	125624498	-	llmg_1703	-	hypothetical protein
1617	 36.87	0	1678978..1680081	-	367	125624499	alr	llmg_1704	-	alanine racemase
1618	 35.28	0	1680125..1680484	-	119	125624500	acpS	llmg_1705	-	holo-[acyl-carrier protein] synthase
1619	 39.11	0	1680613..1682031	-	472	125624501	pepV	llmg_1706	-	dipeptidase PepV
1620	 33.07	0	1682785..1683171	+	128	125624502	-	llmg_1707	-	putative glycosyltransferase
1621	 29.23	-1	1683885..1685078	-	397	125624503	-	llmg_1708	-	putative glycosyltransferase
1622	 31.26	-1	1685283..1685765	-	160	125624504	maa2	llmg_1709	-	maltose O-acetyltransferase
1623	 33.22	0	1685949..1686839	-	296	125624505	-	llmg_1710	-	putative glycosyltransferase
1624	 36.07	0	1688183..1689022	-	279	125624506	tnp981	llmg_1713	-	transposase for insertion sequence element IS981N
1625	 36.78	0	1689034..1689294	-	86	125624507	-	llmg_1714	-	hypothetical protein
1626	 37.80	0	1689454..1689744	+	96	125624508	-	llmg_1715	-	hypothetical protein
1627	 38.98	0	1689840..1690601	+	253	125624509	tnp904	llmg_1716	-	transposase for insertion sequence IS904G
1628	 34.88	0	1691590..1692750	-	386	125624510	mutY	llmg_1717	-	A/G-specific adenine glycosylase
1629	 36.32	0	1692848..1694857	-	669	125624511	uvrC	llmg_1718	-	excinuclease ABC subunit C
1630	 34.59	0	1694953..1695666	-	237	125624512	pnuC1	llmg_1719	-	PnuC1 protein
1631	 37.94	0	1695684..1696400	-	238	125624513	udp	llmg_1720	-	uridine phosphorylase
1632	 39.26	0	1698612..1700063	-	483	125624514	-	llmg_1723	-	putative secreted protein
1633	 41.73	+1	1700259..1701485	-	408	125624515	rpsA	llmg_1724	-	30S ribosomal protein S1
1634	 40.69	+1	1701740..1702894	-	384	125624516	trmU	llmg_1725	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1635	 32.44	0	1703183..1703968	+	261	125624517	-	llmg_1726	-	putative galactose-1-phosphate uridylyltransferase
1636	 35.52	0	1704039..1706690	+	883	125624518	-	llmg_1727	-	ABC transporter permease protein
1637	 31.97	-1	1706680..1706826	+	48	125624519	-	llmg_1728	-	putative secreted protein
1638	 36.99	0	1706892..1709054	-	720	125624520	copA	llmg_1729	-	copper/potassium-transporting ATPase
1639	 36.32	0	1709241..1709441	-	66	125624521	merP	llmg_1730	-	mercuric reductase
1640	 35.75	0	1709460..1709915	-	151	125624522	copR	llmg_1731	-	transcriptional regulator
1641	 42.59	+1	1710037..1710900	-	287	125624523	sdaA	llmg_1732	-	L-serine dehydratase alpha subunit
1642	 38.84	0	1710920..1711591	-	223	125624524	sdaB	llmg_1733	-	L-serine dehydratase beta subunit
1643	 40.72	+1	1711705..1713708	-	667	125624525	noxB	llmg_1734	-	NADH dehydrogenase
1644	 36.11	0	1713852..1715111	-	419	125624526	noxA	llmg_1735	-	NADH dehydrogenase
1645	 31.96	-1	1715242..1715604	-	120	125624527	-	llmg_1736	-	hypothetical protein
1646	 35.07	0	1715764..1716567	-	267	125624528	cpo	llmg_1737	-	non-heme chloride peroxidase
1647	 34.21	0	1716819..1718180	-	453	125624529	-	llmg_1738	-	beta-glucosidase
1648	 35.45	0	1720098..1720853	-	251	125624530	-	llmg_1740	-	HTH-type transcriptional regulator
1649	 39.16	0	1721185..1723674	-	829	125624531	leuS	llmg_1741	-	leucyl-tRNA synthetase
1650	 30.95	-1	1723745..1724416	-	223	125624532	-	llmg_1742	-	putative regulator
1651	 41.13	+1	1724489..1725463	-	324	125624533	prsA	llmg_1743	-	ribose-phosphate pyrophosphokinase
1652	 36.16	0	1725640..1727019	-	459	125624534	ftsY	llmg_1744	-	signal recognition particle-docking protein
1653	 33.70	0	1727081..1727632	-	183	125624535	-	llmg_1745	-	hypothetical protein
1654	 31.85	-1	1727642..1728451	-	269	125624536	-	llmg_1746	-	putative hydrolase
1655	 36.31	0	1728858..1730168	+	436	125624537	-	llmg_1747	-	amino acid permease
1656	 34.25	0	1730218..1730979	-	253	125624538	-	llmg_1748	-	hypothetical protein
1657	 34.76	0	1730976..1732094	-	372	125624539	-	llmg_1749	-	hypothetical protein
1658	 34.06	0	1732185..1732595	-	136	125624540	-	llmg_1750	-	hypothetical protein
1659	 34.72	0	1732686..1734854	-	722	125624541	-	llmg_1751	-	alkaline phosphatase superfamily protein
1660	 35.94	0	1735096..1738620	-	1174	125624542	smc	llmg_1752	-	chromosome segregation protein smc
1661	 36.78	0	1738610..1739305	-	231	125624543	rnc	llmg_1753	-	ribonuclease III
1662	 33.03	0	1739480..1740481	-	333	125624544	argF	llmg_1754	-	ornithine carbamoyltransferase
1663	 37.56	0	1740509..1741360	-	283	125624545	argB	llmg_1755	-	acetylglutamate kinase
1664	 35.89	0	1741357..1742490	-	377	125624546	argD	llmg_1756	-	acetylornithine aminotransferase
1665	 38.29	0	1742503..1743693	-	396	125624547	argJ	llmg_1757	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1666	 34.12	0	1743705..1744727	-	340	125624548	argC	llmg_1758	-	N-acetyl-gamma-glutamyl-phosphate reductase
1667	 37.44	0	1744868..1745500	-	210	125624549	-	llmg_1759	-	putative NADH-flavin reductase
1668	 33.33	0	1745604..1746113	-	169	125624550	-	llmg_1760	-	hypothetical protein
1669	 36.75	0	1746125..1746241	+	38	125624551	-	llmg_1761	-	hypothetical protein
1670	 41.94	+1	1746516..1747247	-	243	125624552	fabG	llmg_1762	-	3-ketoacyl-(acyl-carrier-protein) reductase
1671	 42.50	+1	1747264..1747503	-	79	125624553	-	llmg_1763	-	hypothetical protein
1672	 35.95	0	1748021..1750009	-	662	125624554	metS	llmg_1764	-	MetS protein
1673	 40.09	+1	1750191..1751048	+	285	125624555	exoA	llmg_1765	-	3'-exo-deoxyribonuclease
1674	 35.30	0	1751137..1751694	+	185	125624556	-	llmg_1766	-	putative acetyltransferase
1675	 34.19	0	1751946..1752530	+	194	125624557	rdrA	llmg_1767	-	DeoR family transcriptional regulator
1676	 30.48	-1	1752697..1753047	-	116	125624558	-	llmg_1768	-	hypothetical protein
1677	 34.90	0	1753123..1753377	-	84	125624559	-	llmg_1769	-	hypothetical protein
1678	 37.90	0	1753404..1755047	-	547	125624560	noxC	llmg_1770	-	NADH oxidase
1679	 30.74	-1	1755044..1755352	-	102	125624561	-	llmg_1771	-	putative rhodanese-related sulfurtransferase
1680	 33.86	0	1755363..1755740	-	125	125624562	-	llmg_1772	-	putative rhodanese-related sulfurtransferase
1681	 33.33	0	1755797..1756036	-	79	125624563	-	llmg_1773	-	hypothetical protein
1682	 21.51	-2	1756038..1756130	-	30	125624564	-	llmg_1774	-	hypothetical protein
1683	 37.79	0	1756264..1757184	-	306	125624565	cysK	llmg_1775	-	O-acetylserine sulfhydrylase
1684	 37.18	0	1757399..1758541	-	380	125624566	metC	llmg_1776	-	cystathionine gamma-synthase/cystathionine beta-lyase
1685	 38.36	0	1758672..1759466	-	264	125624567	accA	llmg_1777	-	AccA protein
1686	 37.95	0	1759459..1760325	-	288	125624568	accD	llmg_1778	-	acetyl-CoA carboxylase subunit beta
1687	 38.96	0	1760411..1761778	-	455	125624569	accC	llmg_1779	-	acetyl-CoA carboxylase biotin carboxylase subunit
1688	 26.78	-2	1761771..1761953	-	60	125624570	-	llmg_1780	-	hypothetical protein
1689	 37.47	0	1762172..1762606	-	144	125624571	fabZ	llmg_1781	-	(3R)-hydroxymyristoyl-ACP dehydratase
1690	 38.46	0	1762733..1763200	-	155	125624572	accB	llmg_1782	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
1691	 40.89	+1	1763207..1764436	-	409	125624573	fabF	llmg_1783	-	3-oxoacyl-[acyl-carrier-protein] synthase II
1692	 36.61	0	1764477..1765208	-	243	125624574	fabG	llmg_1784	-	3-ketoacyl-(acyl-carrier-protein) reductase
1693	 37.13	0	1765337..1766257	-	306	125624575	fabD	llmg_1785	-	malonyl CoA-acyl carrier protein transacylase
1694	 35.59	0	1766543..1766764	-	73	125624576	acpP	llmg_1786	-	acyl carrier protein
1695	 39.47	0	1766945..1767922	-	325	125624577	fabH	llmg_1787	-	3-oxoacyl-(acyl carrier protein) synthase III
1696	 34.92	0	1767922..1768362	-	146	125624578	rmaG	llmg_1788	-	MarR family transcriptional regulator
1697	 37.34	0	1768769..1769716	-	315	125624579	pmi	llmg_1789	-	mannose-6-phosphate isomerase
1698	 27.22	-2	1769704..1769883	+	59	125624580	-	llmg_1790	-	hypothetical protein
1699	 35.56	0	1769892..1770251	-	119	125624581	rbfA	llmg_1791	-	ribosome-binding factor A
1700	 39.43	0	1770497..1773349	-	950	125624582	infB	llmg_1792	-	translation initiation factor IF-2
1701	 34.64	0	1773370..1773675	-	101	125624583	-	llmg_1793	-	hypothetical protein
1702	 36.70	0	1773678..1774004	-	108	125624584	-	llmg_1794	-	hypothetical protein
1703	 38.64	0	1774170..1775318	-	382	125624585	nusA	llmg_1796	-	transcription elongation factor NusA
1704	 35.44	0	1775486..1775959	-	157	125624586	-	llmg_1797	-	hypothetical protein
1705	 33.83	0	1776233..1776637	+	134	125624587	lrgA	llmg_1798	-	LrgA family protein
1706	 40.77	+1	1776656..1777354	+	232	125624588	lrgB	llmg_1799	-	LrgB family protein
1707	 37.41	0	1777419..1778129	-	236	125624589	-	llmg_1800	-	hypothetical protein
1708	 35.74	0	1778143..1779432	-	429	125624590	srtC	llmg_1801	-	sortase SrtC
1709	 44.02	+2	1779483..1781306	-	607	125624591	-	llmg_1802	-	hypothetical protein
1710	 45.55	+2	1781422..1784949	-	1175	125624592	-	llmg_1803	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.