IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1541	 36.62	0	1599003..1600433	-	476	125624423	tagH	llmg_1623	-	teichoic acid export ATP-binding protein tagH
1542	 33.88	0	1600496..1601404	-	302	125624424	tagL	llmg_1624	-	exopolysaccharide biosynthesis protein
1543	 34.03	0	1601728..1602447	-	239	125624425	-	llmg_1625	-	hypothetical protein
1544	 37.42	0	1603984..1604448	-	154	125624426	rmaH	llmg_1627	-	MarR family transcriptional regulator
1545	 33.64	0	1604605..1605246	-	213	125624427	-	llmg_1628	-	putative secreted protein
1546	 33.88	0	1605419..1606156	-	245	125624428	-	llmg_1629	-	putative methyltransferase
1547	 38.17	0	1606380..1606565	-	61	125624429	-	llmg_1630	-	hypothetical protein
1548	 39.01	0	1606663..1608618	-	651	125624430	gyrB	llmg_1631	-	DNA gyrase subunit B
1549	 36.57	0	1608772..1609419	-	215	125624431	-	llmg_1632	-	putative hydrolase
1550	 35.11	0	1609485..1610330	-	281	125624432	-	llmg_1633	-	hypothetical protein
1551	 32.19	-1	1610468..1612048	-	526	125624433	-	llmg_1634	-	hypothetical protein
1552	 36.21	0	1612029..1612793	-	254	125624434	-	llmg_1635	-	putative ABC transporter ATP-binding protein
1553	 36.67	0	1612916..1613815	-	299	125624435	-	llmg_1636	-	putative permease protein
1554	 36.93	0	1614001..1615278	-	425	125624436	mleP	llmg_1637	-	malate transporter
1555	 36.54	0	1615293..1616915	-	540	125624437	mleS	llmg_1638	-	malate dehydrogenase
1556	 33.91	0	1617330..1618880	-	516	125624438	-	llmg_1639	-	ABC transporter ATP-binding protein
1557	 34.57	0	1618991..1619152	-	53	125624439	-	llmg_1640	-	hypothetical protein
1558	 40.42	+1	1619425..1620186	-	253	125624440	butA	llmg_1641	-	acetoin reductase
1559	 38.12	0	1620222..1621202	-	326	125624441	butB	llmg_1642	-	2,3-butanediol dehydrogenase
1560	 37.75	0	1621500..1622744	-	414	125624442	rodA	llmg_1643	-	rod shape-determining protein RodA
1561	 38.12	0	1622956..1623561	-	201	125624443	-	llmg_1644	-	hypothetical protein
1562	 32.91	0	1623558..1624028	-	156	125624444	-	llmg_1645	-	general stress protein GSP13
1563	 38.07	0	1623991..1624581	-	196	125624445	ppiB	llmg_1646	-	peptidyl-prolyl cis-trans isomerase
1564	 35.69	0	1624680..1625486	-	268	125624446	-	llmg_1647	-	putative hydrolase
1565	 35.87	0	1625557..1626186	-	209	125624447	llrD	llmg_1648	-	two-component system regulator llrD
1566	 36.64	0	1626214..1627212	-	332	125624448	kinD	llmg_1649	-	sensor protein kinase kinD
1567	 36.46	0	1627209..1627784	-	191	125624449	-	llmg_1650	-	putative secreted protein
1568	 26.26	-2	1628174..1628272	-	32	125624450	-	llmg_1651	-	hypothetical protein
1569	 30.22	-1	1628988..1629821	-	277	125624451	-	llmg_1652	-	hypothetical protein
1570	 32.30	-1	1630153..1631604	-	483	125624452	-	llmg_1653	-	hypothetical protein
1571	 36.43	0	1631663..1632502	-	279	125624453	tnp981	llmg_1654	-	transposase for insertion sequence element IS981M
1572	 36.78	0	1632514..1632774	-	86	125624454	-	llmg_1655	-	hypothetical protein
1573	 27.43	-2	1632954..1633292	+	112	125624455	-	llmg_1656	-	hypothetical protein
1574	 29.13	-1	1633481..1634455	-	324	125624456	xerD	llmg_1657	-	putative integrase/recombinase
1575	 39.34	0	1634590..1634922	-	110	125624457	-	llmg_1658	-	hypothetical protein
1576	 37.58	0	1635111..1637510	-	799	125624458	-	llmg_1659	-	hypothetical protein
1577	 32.58	0	1637672..1638205	+	177	125624459	-	llmg_1660	-	TetR family transcriptional regulator
1578	 33.66	0	1638267..1638572	-	101	125624460	hslB	llmg_1661	-	HU-like DNA-binding protein
1579	 34.51	0	1638797..1639222	-	141	125624461	uspA	llmg_1662	-	universal stress protein A
1580	 31.41	-1	1639477..1639632	+	51	125624462	-	llmg_1663	-	hypothetical protein
1581	 37.74	0	1639775..1640500	-	241	125624463	pnuC2	llmg_1664	-	nicotinamide mononucleotide transporter
1582	 38.21	0	1640773..1641018	+	81	125624464	-	llmg_1665	-	hypothetical protein
1583	 34.23	0	1641081..1641638	-	185	125624465	-	llmg_1666	-	hypothetical protein
1584	 34.16	0	1641869..1643197	-	442	125624466	-	llmg_1667	-	glycosyltransferase
1585	 32.29	-1	1643190..1643381	-	63	125624467	-	llmg_1668	-	hypothetical protein
1586	 32.47	0	1643957..1644418	+	153	125624468	-	llmg_1669	-	putative acetyltransferase
1587	 31.65	-1	1644756..1645172	+	138	125624469	-	llmg_1670	-	putative ketosteroid isomerase
1588	 44.64	+2	1645348..1645692	-	114	125624470	rplS	llmg_1671	-	50S ribosomal protein L19
1589	 35.11	0	1645852..1646526	-	224	125624471	-	llmg_1672	-	hypothetical protein
1590	 30.74	-1	1648077..1648964	-	295	125624472	mleR	llmg_1674	-	malolactic fermentation system transcription activator
1591	 33.63	0	1649325..1649987	-	220	125624473	-	llmg_1675	-	ABC transporter ATP-binding protein
1592	 38.27	0	1650095..1651612	-	505	125624474	-	llmg_1676	-	ABC transporter permease protein
1593	 36.14	0	1651763..1652047	-	94	125624475	-	llmg_1677	-	hypothetical protein
1594	 37.07	0	1652246..1653235	-	329	125624476	mraY	llmg_1678	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1595	 38.25	0	1653310..1655607	-	765	125624477	pbpX	llmg_1679	-	penicillin-binding protein
1596	 35.17	0	1655604..1655984	-	126	125624478	ftsL	llmg_1680	-	cell division protein
1597	 36.27	0	1656140..1657093	-	317	125624479	mraW	llmg_1681	-	S-adenosyl-methyltransferase
1598	 31.07	-1	1657324..1658250	-	308	125624480	-	llmg_1682	-	hypothetical protein
1599	 35.06	0	1658272..1658793	-	173	125624481	-	llmg_1683	-	hypothetical protein
1600	 29.98	-1	1658888..1659454	-	188	125624482	-	llmg_1684	-	hypothetical protein
1601	 34.59	0	1660156..1661823	-	555	125624483	recN	llmg_1685	-	DNA repair protein recN
1602	 33.33	0	1662003..1662449	-	148	125624484	ahrC	llmg_1686	-	arginine transcriptional regulator
1603	 38.66	0	1662446..1663252	-	268	125624485	-	llmg_1687	-	hypothetical protein
1604	 33.53	0	1663328..1663828	-	166	125624486	-	llmg_1688	-	putative acetyltransferase
1605	 38.19	0	1663829..1664734	-	301	125624487	ispA	llmg_1689	-	geranyltranstransferase
1606	 30.00	-1	1666225..1666464	-	79	125624488	xseB	llmg_1691	-	exodeoxyribonuclease VII, small subunit
1607	 38.28	0	1666467..1667720	-	417	125624489	xseA	llmg_1692	-	exodeoxyribonuclease VII large subunit
1608	 40.56	+1	1667891..1668748	-	285	125624490	folD	llmg_1693	-	methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase
1609	 37.49	0	1668937..1670979	+	680	125624491	copB	llmg_1694	-	copper-potassium transporting ATPase B
1610	 23.05	-2	1671055..1671336	-	93	125624492	-	llmg_1695	-	hypothetical protein
1611	 42.82	+1	1672592..1674109	-	505	125624493	-	llmg_1698	-	hypothetical protein
1612	 35.40	0	1674398..1675900	-	500	125624494	choS	llmg_1699	-	choline ABC transporter permease and substrate binding protein
1613	 35.84	0	1675897..1676814	-	305	125624495	choQ	llmg_1700	-	choline ABC transporter ATP binding protein
1614	 27.78	-2	1676817..1676960	+	47	125624496	-	llmg_1701	-	hypothetical protein
1615	 34.94	0	1676943..1678250	-	435	125624497	gshR	llmg_1702	-	glutathione reductase
1616	 31.70	-1	1678389..1678817	-	142	125624498	-	llmg_1703	-	hypothetical protein
1617	 36.87	0	1678978..1680081	-	367	125624499	alr	llmg_1704	-	alanine racemase
1618	 35.28	0	1680125..1680484	-	119	125624500	acpS	llmg_1705	-	holo-[acyl-carrier protein] synthase
1619	 39.11	0	1680613..1682031	-	472	125624501	pepV	llmg_1706	-	dipeptidase PepV
1620	 33.07	0	1682785..1683171	+	128	125624502	-	llmg_1707	-	putative glycosyltransferase
1621	 29.23	-1	1683885..1685078	-	397	125624503	-	llmg_1708	-	putative glycosyltransferase
1622	 31.26	-1	1685283..1685765	-	160	125624504	maa2	llmg_1709	-	maltose O-acetyltransferase
1623	 33.22	0	1685949..1686839	-	296	125624505	-	llmg_1710	-	putative glycosyltransferase
1624	 36.07	0	1688183..1689022	-	279	125624506	tnp981	llmg_1713	-	transposase for insertion sequence element IS981N
1625	 36.78	0	1689034..1689294	-	86	125624507	-	llmg_1714	-	hypothetical protein
1626	 37.80	0	1689454..1689744	+	96	125624508	-	llmg_1715	-	hypothetical protein
1627	 38.98	0	1689840..1690601	+	253	125624509	tnp904	llmg_1716	-	transposase for insertion sequence IS904G
1628	 34.88	0	1691590..1692750	-	386	125624510	mutY	llmg_1717	-	A/G-specific adenine glycosylase
1629	 36.32	0	1692848..1694857	-	669	125624511	uvrC	llmg_1718	-	excinuclease ABC subunit C
1630	 34.59	0	1694953..1695666	-	237	125624512	pnuC1	llmg_1719	-	PnuC1 protein
1631	 37.94	0	1695684..1696400	-	238	125624513	udp	llmg_1720	-	uridine phosphorylase
1632	 39.26	0	1698612..1700063	-	483	125624514	-	llmg_1723	-	putative secreted protein
1633	 41.73	+1	1700259..1701485	-	408	125624515	rpsA	llmg_1724	-	30S ribosomal protein S1
1634	 40.69	+1	1701740..1702894	-	384	125624516	trmU	llmg_1725	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1635	 32.44	0	1703183..1703968	+	261	125624517	-	llmg_1726	-	putative galactose-1-phosphate uridylyltransferase
1636	 35.52	0	1704039..1706690	+	883	125624518	-	llmg_1727	-	ABC transporter permease protein
1637	 31.97	-1	1706680..1706826	+	48	125624519	-	llmg_1728	-	putative secreted protein
1638	 36.99	0	1706892..1709054	-	720	125624520	copA	llmg_1729	-	copper/potassium-transporting ATPase
1639	 36.32	0	1709241..1709441	-	66	125624521	merP	llmg_1730	-	mercuric reductase
1640	 35.75	0	1709460..1709915	-	151	125624522	copR	llmg_1731	-	transcriptional regulator
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.