IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1469	 31.46	-1	1521136..1521723	+	195	125624351	-	llmg_1548	-	putative phosphohydrolase
1470	 33.33	0	1521871..1522041	+	56	125624352	-	llmg_1549	-	hypothetical protein
1471	 37.85	0	1522205..1522735	+	176	125624353	-	llmg_1550	-	hypothetical protein
1472	 38.18	0	1522750..1523553	-	267	125624354	fdhC	llmg_1551	-	putative formate dehydrogenase
1473	 36.66	0	1523708..1525330	-	540	125624355	-	llmg_1552	-	putative ABC type transport system permease protein
1474	 35.84	0	1525342..1526220	-	292	125624356	-	llmg_1553	-	putative ABC transporter ATP-binding protein
1475	 28.42	-2	1526416..1527066	+	216	125624357	-	llmg_1554	-	TetR family transcriptional regulator
1476	 35.73	0	1527099..1528016	-	305	125624358	-	llmg_1555	-	hypothetical protein
1477	 38.72	0	1528112..1529095	-	327	125624359	-	llmg_1556	-	hypothetical protein
1478	 36.15	0	1529092..1529979	-	295	125624360	-	llmg_1557	-	hypothetical protein
1479	 34.92	0	1530044..1531489	-	481	125624361	clsA	llmg_1558	-	cardiolipin synthetase
1480	 36.81	0	1531681..1532370	-	229	125624362	flpA	llmg_1559	-	FNR like protein A
1481	 33.89	0	1532360..1532899	-	179	125624363	-	llmg_1560	-	stress induced DNA binding protein (putative)
1482	 39.02	0	1533121..1534983	-	620	125624364	-	llmg_1561	-	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
1483	 33.33	0	1535617..1536057	-	146	125624365	-	llmg_1562	-	hypothetical protein
1484	 40.90	+1	1536449..1537783	-	444	125624366	-	llmg_1563	-	hypothetical protein
1485	 38.14	0	1538074..1538364	+	96	125624367	-	llmg_1564	-	hypothetical protein
1486	 38.98	0	1538460..1539221	+	253	125624368	tnp904	llmg_1565	-	transposase for insertion sequence IS904F
1487	 37.97	0	1539275..1539856	+	193	125624369	-	llmg_1566	-	hypothetical protein
1488	 40.89	+1	1540757..1542661	-	634	125624370	fruA	llmg_1568	-	PTS system, fructose specific IIBC components
1489	 36.06	0	1542661..1543578	-	305	125624371	fruC	llmg_1569	-	tagatose-6-phosphate kinase
1490	 36.89	0	1543662..1544363	-	233	125624372	fruR	llmg_1570	-	lactose transport regulator
1491	 38.07	0	1544485..1545624	-	379	125624373	hipO2	llmg_1571	-	aminoacylase/N-acyl-L-amino acid amidohydrolase/hippurate hydrolase
1492	 35.66	0	1545691..1547454	-	587	125624374	mycA	llmg_1572	-	Myosin-crossreactive streptococcal antigen homologue
1493	 30.84	-1	1547624..1549468	-	614	125624375	-	llmg_1573	-	hypothetical protein
1494	 39.75	+1	1549632..1551455	-	607	125624376	dnaK	llmg_1574	-	molecular chaperone DnaK
1495	 38.33	0	1551527..1552066	-	179	125624377	grpE	llmg_1575	-	GrpE protein
1496	 34.48	0	1552096..1553139	-	347	125624378	hrcA	llmg_1576	-	heat-inducible transcription repressor
1497	 26.91	-2	1553287..1553691	-	134	125624379	-	llmg_1577	-	hypothetical protein
1498	 37.22	0	1553706..1554452	-	248	125624380	dacB	llmg_1578	-	D-alanyl-D-alanine carboxypeptidase
1499	 38.51	0	1554449..1555144	-	231	125624381	gpmB	llmg_1579	-	phosphoglycerate mutase
1500	 38.33	0	1555215..1555694	-	159	125624382	-	llmg_1580	-	hypothetical protein
1501	 42.45	+1	1555789..1557126	-	445	125624383	-	llmg_1581	-	hypothetical protein
1502	 37.12	0	1557243..1557506	-	87	125624384	-	llmg_1582	-	hypothetical protein
1503	 33.33	0	1557660..1558601	+	313	125624385	-	llmg_1583	-	putative prenyltransferase
1504	 33.33	0	1558625..1559683	-	352	125624386	-	llmg_1584	-	endonuclease/exonuclease/phosphatase family protein
1505	 38.44	0	1559761..1560348	-	195	125624387	-	llmg_1585	-	putative amidase
1506	 37.64	0	1560360..1562819	-	819	125624388	vacB1	llmg_1586	-	putative exoribonuclease R
1507	 38.55	0	1563061..1563309	-	82	125624389	secG	llmg_1587	-	preprotein translocase subunit SecG
1508	 38.51	0	1563450..1564376	-	308	125624390	trxB1	llmg_1588	-	TrxB1 protein
1509	 31.14	-1	1564574..1564801	-	75	125624391	-	llmg_1589	-	hypothetical protein
1510	 37.58	0	1564803..1565555	-	250	125624392	-	llmg_1590	-	putative amino-acid ABC transporter ATP-binding protein
1511	 36.94	0	1565567..1566454	-	295	125624393	-	llmg_1591	-	putative amino-acid ABC transporter permease protein
1512	 35.34	0	1566722..1567570	-	282	125624394	-	llmg_1593	-	amino acid ABC transporter substrate binding protein
1513	 40.45	+1	1567714..1568289	-	191	125624395	-	llmg_1594	-	gamma-glutamyl-diamino acid-endopeptidase
1514	 40.17	+1	1568416..1570083	-	555	125624396	fhs	llmg_1595	-	formate--tetrahydrofolate ligase
1515	 39.14	0	1570244..1570570	-	108	125624397	-	llmg_1596	-	hypothetical protein
1516	 39.15	0	1570654..1571100	-	148	125624398	-	llmg_1597	-	hypothetical protein
1517	 35.38	0	1571714..1572202	+	162	125624399	-	llmg_1598	-	putative secreted protein
1518	 38.87	0	1572439..1573143	-	234	125624400	deoD	llmg_1599	-	DeoD protein
1519	 34.07	0	1573214..1573483	-	89	125624401	-	llmg_1600	-	hypothetical protein
1520	 38.19	0	1573541..1574776	-	411	125624402	deoB	llmg_1601	-	phosphopentomutase
1521	 37.55	0	1574963..1575793	-	276	125624403	-	llmg_1602	-	putative transcriptional regulator
1522	 31.27	-1	1575893..1577008	-	371	125624404	tagB	llmg_1603	-	teichoic acid biosynthesis protein B
1523	 31.73	-1	1576998..1578185	-	395	125624405	tagF	llmg_1604	-	teichoic acid biosynthesis protein F
1524	 30.56	-1	1578208..1578639	-	143	125624406	-	llmg_1605	-	hypothetical protein
1525	 30.92	-1	1578636..1579091	-	151	125624407	tagD2	llmg_1606	-	glycerol-3-phosphate cytidylyltransferase
1526	 30.03	-1	1579142..1580323	-	393	125624408	-	llmg_1607	-	hypothetical protein
1527	 39.92	+1	1580420..1581421	-	333	125624409	-	llmg_1608	-	putative glycosyl hydrolases
1528	 40.40	+1	1581424..1582710	-	428	125624410	-	llmg_1609	-	putative secreted protein
1529	 39.95	+1	1584010..1585233	+	407	125624411	tnp712	llmg_1611	-	transposase for insertion sequence element IS712G
1530	 35.84	0	1585245..1586003	+	252	125624412	-	llmg_1612	-	putative transposase helper protein for IS712G
1531	 36.22	0	1586044..1586841	-	265	125624413	-	llmg_1613	-	putative secreted protein
1532	 30.45	-1	1586856..1587236	-	126	125624414	-	llmg_1614	-	hypothetical protein
1533	 36.39	0	1587246..1587899	-	217	125624415	-	llmg_1615	-	putative acetyltransferase
1534	 38.03	0	1587913..1589082	-	389	125624416	ugd	llmg_1616	-	UDP-glucose 6-dehydrogenase
1535	 36.24	0	1589136..1592123	-	995	125624417	-	llmg_1617	-	hypothetical protein
1536	 37.07	0	1592144..1593481	-	445	125624418	-	llmg_1618	-	hypothetical protein
1537	 36.64	0	1593468..1594496	-	342	125624419	-	llmg_1619	-	hypothetical protein
1538	 38.92	0	1594493..1596694	-	733	125624420	-	llmg_1620	-	hypothetical protein
1539	 35.63	0	1596691..1598169	-	492	125624421	-	llmg_1621	-	hypothetical protein
1540	 34.32	0	1598186..1598992	-	268	125624422	tagG	llmg_1622	-	teichoic acid ABC transporter permease protein
1541	 36.62	0	1599003..1600433	-	476	125624423	tagH	llmg_1623	-	teichoic acid export ATP-binding protein tagH
1542	 33.88	0	1600496..1601404	-	302	125624424	tagL	llmg_1624	-	exopolysaccharide biosynthesis protein
1543	 34.03	0	1601728..1602447	-	239	125624425	-	llmg_1625	-	hypothetical protein
1544	 37.42	0	1603984..1604448	-	154	125624426	rmaH	llmg_1627	-	MarR family transcriptional regulator
1545	 33.64	0	1604605..1605246	-	213	125624427	-	llmg_1628	-	putative secreted protein
1546	 33.88	0	1605419..1606156	-	245	125624428	-	llmg_1629	-	putative methyltransferase
1547	 38.17	0	1606380..1606565	-	61	125624429	-	llmg_1630	-	hypothetical protein
1548	 39.01	0	1606663..1608618	-	651	125624430	gyrB	llmg_1631	-	DNA gyrase subunit B
1549	 36.57	0	1608772..1609419	-	215	125624431	-	llmg_1632	-	putative hydrolase
1550	 35.11	0	1609485..1610330	-	281	125624432	-	llmg_1633	-	hypothetical protein
1551	 32.19	-1	1610468..1612048	-	526	125624433	-	llmg_1634	-	hypothetical protein
1552	 36.21	0	1612029..1612793	-	254	125624434	-	llmg_1635	-	putative ABC transporter ATP-binding protein
1553	 36.67	0	1612916..1613815	-	299	125624435	-	llmg_1636	-	putative permease protein
1554	 36.93	0	1614001..1615278	-	425	125624436	mleP	llmg_1637	-	malate transporter
1555	 36.54	0	1615293..1616915	-	540	125624437	mleS	llmg_1638	-	malate dehydrogenase
1556	 33.91	0	1617330..1618880	-	516	125624438	-	llmg_1639	-	ABC transporter ATP-binding protein
1557	 34.57	0	1618991..1619152	-	53	125624439	-	llmg_1640	-	hypothetical protein
1558	 40.42	+1	1619425..1620186	-	253	125624440	butA	llmg_1641	-	acetoin reductase
1559	 38.12	0	1620222..1621202	-	326	125624441	butB	llmg_1642	-	2,3-butanediol dehydrogenase
1560	 37.75	0	1621500..1622744	-	414	125624442	rodA	llmg_1643	-	rod shape-determining protein RodA
1561	 38.12	0	1622956..1623561	-	201	125624443	-	llmg_1644	-	hypothetical protein
1562	 32.91	0	1623558..1624028	-	156	125624444	-	llmg_1645	-	general stress protein GSP13
1563	 38.07	0	1623991..1624581	-	196	125624445	ppiB	llmg_1646	-	peptidyl-prolyl cis-trans isomerase
1564	 35.69	0	1624680..1625486	-	268	125624446	-	llmg_1647	-	putative hydrolase
1565	 35.87	0	1625557..1626186	-	209	125624447	llrD	llmg_1648	-	two-component system regulator llrD
1566	 36.64	0	1626214..1627212	-	332	125624448	kinD	llmg_1649	-	sensor protein kinase kinD
1567	 36.46	0	1627209..1627784	-	191	125624449	-	llmg_1650	-	putative secreted protein
1568	 26.26	-2	1628174..1628272	-	32	125624450	-	llmg_1651	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.