IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1451	 38.49	0	1501033..1501497	-	154	125624333	-	llmg_1529	-	riboflavin synthase, beta subunit
1452	 37.68	0	1501524..1502720	-	398	125624334	ribA	llmg_1530	-	riboflavin biosynthesis protein ribA
1453	 34.41	0	1502732..1503379	-	215	125624335	ribB	llmg_1531	-	riboflavin synthase subunit alpha
1454	 37.10	0	1503379..1504467	-	362	125624336	ribD	llmg_1532	-	riboflavin biosynthesis protein RibD
1455	 34.11	0	1504959..1505864	+	301	125624337	-	llmg_1533	-	magnesium and cobalt transport protein
1456	 38.06	0	1505890..1508364	-	824	125624338	parC	llmg_1534	-	DNA topoisomerase IV subunit A
1457	 37.11	0	1508689..1509138	-	149	125624339	elaA	llmg_1536	-	ElaA protein
1458	 33.33	0	1509135..1509968	-	277	125624340	dnaQ	llmg_1537	-	DNA polymerase III, epsilon chain
1459	 34.02	0	1509961..1510542	-	193	125624341	-	llmg_1538	-	putative isochorismatase
1460	 38.71	0	1510604..1512538	-	644	125624342	parE	llmg_1539	-	DNA topoisomerase IV subunit B
1461	 35.20	0	1512817..1513458	+	213	125624343	-	llmg_1540	-	putative glycerol-3-phosphate acyltransferase PlsY
1462	 34.25	0	1513632..1513850	+	72	125624344	nrdH	llmg_1541	-	glutaredoxin-like protein nrdH
1463	 37.83	0	1513852..1514274	+	140	125624345	nrdI	llmg_1542	-	ribonucleotide reductase stimulatory protein
1464	 35.78	0	1514411..1516579	+	722	125624346	nrdE	llmg_1543	-	ribonucleotide-diphosphate reductase subunit alpha
1465	 36.61	0	1516864..1517841	+	325	125624347	nrdF	llmg_1544	-	ribonucleotide-diphosphate reductase subunit beta
1466	 36.11	0	1517951..1518886	-	311	125624348	ftsX	llmg_1545	-	cell division protein ftsX-like protein
1467	 40.12	+1	1518879..1519571	-	230	125624349	ftsE	llmg_1546	-	cell division ATP-binding protein
1468	 40.44	+1	1519901..1520998	-	365	125624350	prfB	llmg_1547	-	peptide chain release factor 2
1469	 31.46	-1	1521136..1521723	+	195	125624351	-	llmg_1548	-	putative phosphohydrolase
1470	 33.33	0	1521871..1522041	+	56	125624352	-	llmg_1549	-	hypothetical protein
1471	 37.85	0	1522205..1522735	+	176	125624353	-	llmg_1550	-	hypothetical protein
1472	 38.18	0	1522750..1523553	-	267	125624354	fdhC	llmg_1551	-	putative formate dehydrogenase
1473	 36.66	0	1523708..1525330	-	540	125624355	-	llmg_1552	-	putative ABC type transport system permease protein
1474	 35.84	0	1525342..1526220	-	292	125624356	-	llmg_1553	-	putative ABC transporter ATP-binding protein
1475	 28.42	-2	1526416..1527066	+	216	125624357	-	llmg_1554	-	TetR family transcriptional regulator
1476	 35.73	0	1527099..1528016	-	305	125624358	-	llmg_1555	-	hypothetical protein
1477	 38.72	0	1528112..1529095	-	327	125624359	-	llmg_1556	-	hypothetical protein
1478	 36.15	0	1529092..1529979	-	295	125624360	-	llmg_1557	-	hypothetical protein
1479	 34.92	0	1530044..1531489	-	481	125624361	clsA	llmg_1558	-	cardiolipin synthetase
1480	 36.81	0	1531681..1532370	-	229	125624362	flpA	llmg_1559	-	FNR like protein A
1481	 33.89	0	1532360..1532899	-	179	125624363	-	llmg_1560	-	stress induced DNA binding protein (putative)
1482	 39.02	0	1533121..1534983	-	620	125624364	-	llmg_1561	-	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
1483	 33.33	0	1535617..1536057	-	146	125624365	-	llmg_1562	-	hypothetical protein
1484	 40.90	+1	1536449..1537783	-	444	125624366	-	llmg_1563	-	hypothetical protein
1485	 38.14	0	1538074..1538364	+	96	125624367	-	llmg_1564	-	hypothetical protein
1486	 38.98	0	1538460..1539221	+	253	125624368	tnp904	llmg_1565	-	transposase for insertion sequence IS904F
1487	 37.97	0	1539275..1539856	+	193	125624369	-	llmg_1566	-	hypothetical protein
1488	 40.89	+1	1540757..1542661	-	634	125624370	fruA	llmg_1568	-	PTS system, fructose specific IIBC components
1489	 36.06	0	1542661..1543578	-	305	125624371	fruC	llmg_1569	-	tagatose-6-phosphate kinase
1490	 36.89	0	1543662..1544363	-	233	125624372	fruR	llmg_1570	-	lactose transport regulator
1491	 38.07	0	1544485..1545624	-	379	125624373	hipO2	llmg_1571	-	aminoacylase/N-acyl-L-amino acid amidohydrolase/hippurate hydrolase
1492	 35.66	0	1545691..1547454	-	587	125624374	mycA	llmg_1572	-	Myosin-crossreactive streptococcal antigen homologue
1493	 30.84	-1	1547624..1549468	-	614	125624375	-	llmg_1573	-	hypothetical protein
1494	 39.75	+1	1549632..1551455	-	607	125624376	dnaK	llmg_1574	-	molecular chaperone DnaK
1495	 38.33	0	1551527..1552066	-	179	125624377	grpE	llmg_1575	-	GrpE protein
1496	 34.48	0	1552096..1553139	-	347	125624378	hrcA	llmg_1576	-	heat-inducible transcription repressor
1497	 26.91	-2	1553287..1553691	-	134	125624379	-	llmg_1577	-	hypothetical protein
1498	 37.22	0	1553706..1554452	-	248	125624380	dacB	llmg_1578	-	D-alanyl-D-alanine carboxypeptidase
1499	 38.51	0	1554449..1555144	-	231	125624381	gpmB	llmg_1579	-	phosphoglycerate mutase
1500	 38.33	0	1555215..1555694	-	159	125624382	-	llmg_1580	-	hypothetical protein
1501	 42.45	+1	1555789..1557126	-	445	125624383	-	llmg_1581	-	hypothetical protein
1502	 37.12	0	1557243..1557506	-	87	125624384	-	llmg_1582	-	hypothetical protein
1503	 33.33	0	1557660..1558601	+	313	125624385	-	llmg_1583	-	putative prenyltransferase
1504	 33.33	0	1558625..1559683	-	352	125624386	-	llmg_1584	-	endonuclease/exonuclease/phosphatase family protein
1505	 38.44	0	1559761..1560348	-	195	125624387	-	llmg_1585	-	putative amidase
1506	 37.64	0	1560360..1562819	-	819	125624388	vacB1	llmg_1586	-	putative exoribonuclease R
1507	 38.55	0	1563061..1563309	-	82	125624389	secG	llmg_1587	-	preprotein translocase subunit SecG
1508	 38.51	0	1563450..1564376	-	308	125624390	trxB1	llmg_1588	-	TrxB1 protein
1509	 31.14	-1	1564574..1564801	-	75	125624391	-	llmg_1589	-	hypothetical protein
1510	 37.58	0	1564803..1565555	-	250	125624392	-	llmg_1590	-	putative amino-acid ABC transporter ATP-binding protein
1511	 36.94	0	1565567..1566454	-	295	125624393	-	llmg_1591	-	putative amino-acid ABC transporter permease protein
1512	 35.34	0	1566722..1567570	-	282	125624394	-	llmg_1593	-	amino acid ABC transporter substrate binding protein
1513	 40.45	+1	1567714..1568289	-	191	125624395	-	llmg_1594	-	gamma-glutamyl-diamino acid-endopeptidase
1514	 40.17	+1	1568416..1570083	-	555	125624396	fhs	llmg_1595	-	formate--tetrahydrofolate ligase
1515	 39.14	0	1570244..1570570	-	108	125624397	-	llmg_1596	-	hypothetical protein
1516	 39.15	0	1570654..1571100	-	148	125624398	-	llmg_1597	-	hypothetical protein
1517	 35.38	0	1571714..1572202	+	162	125624399	-	llmg_1598	-	putative secreted protein
1518	 38.87	0	1572439..1573143	-	234	125624400	deoD	llmg_1599	-	DeoD protein
1519	 34.07	0	1573214..1573483	-	89	125624401	-	llmg_1600	-	hypothetical protein
1520	 38.19	0	1573541..1574776	-	411	125624402	deoB	llmg_1601	-	phosphopentomutase
1521	 37.55	0	1574963..1575793	-	276	125624403	-	llmg_1602	-	putative transcriptional regulator
1522	 31.27	-1	1575893..1577008	-	371	125624404	tagB	llmg_1603	-	teichoic acid biosynthesis protein B
1523	 31.73	-1	1576998..1578185	-	395	125624405	tagF	llmg_1604	-	teichoic acid biosynthesis protein F
1524	 30.56	-1	1578208..1578639	-	143	125624406	-	llmg_1605	-	hypothetical protein
1525	 30.92	-1	1578636..1579091	-	151	125624407	tagD2	llmg_1606	-	glycerol-3-phosphate cytidylyltransferase
1526	 30.03	-1	1579142..1580323	-	393	125624408	-	llmg_1607	-	hypothetical protein
1527	 39.92	+1	1580420..1581421	-	333	125624409	-	llmg_1608	-	putative glycosyl hydrolases
1528	 40.40	+1	1581424..1582710	-	428	125624410	-	llmg_1609	-	putative secreted protein
1529	 39.95	+1	1584010..1585233	+	407	125624411	tnp712	llmg_1611	-	transposase for insertion sequence element IS712G
1530	 35.84	0	1585245..1586003	+	252	125624412	-	llmg_1612	-	putative transposase helper protein for IS712G
1531	 36.22	0	1586044..1586841	-	265	125624413	-	llmg_1613	-	putative secreted protein
1532	 30.45	-1	1586856..1587236	-	126	125624414	-	llmg_1614	-	hypothetical protein
1533	 36.39	0	1587246..1587899	-	217	125624415	-	llmg_1615	-	putative acetyltransferase
1534	 38.03	0	1587913..1589082	-	389	125624416	ugd	llmg_1616	-	UDP-glucose 6-dehydrogenase
1535	 36.24	0	1589136..1592123	-	995	125624417	-	llmg_1617	-	hypothetical protein
1536	 37.07	0	1592144..1593481	-	445	125624418	-	llmg_1618	-	hypothetical protein
1537	 36.64	0	1593468..1594496	-	342	125624419	-	llmg_1619	-	hypothetical protein
1538	 38.92	0	1594493..1596694	-	733	125624420	-	llmg_1620	-	hypothetical protein
1539	 35.63	0	1596691..1598169	-	492	125624421	-	llmg_1621	-	hypothetical protein
1540	 34.32	0	1598186..1598992	-	268	125624422	tagG	llmg_1622	-	teichoic acid ABC transporter permease protein
1541	 36.62	0	1599003..1600433	-	476	125624423	tagH	llmg_1623	-	teichoic acid export ATP-binding protein tagH
1542	 33.88	0	1600496..1601404	-	302	125624424	tagL	llmg_1624	-	exopolysaccharide biosynthesis protein
1543	 34.03	0	1601728..1602447	-	239	125624425	-	llmg_1625	-	hypothetical protein
1544	 37.42	0	1603984..1604448	-	154	125624426	rmaH	llmg_1627	-	MarR family transcriptional regulator
1545	 33.64	0	1604605..1605246	-	213	125624427	-	llmg_1628	-	putative secreted protein
1546	 33.88	0	1605419..1606156	-	245	125624428	-	llmg_1629	-	putative methyltransferase
1547	 38.17	0	1606380..1606565	-	61	125624429	-	llmg_1630	-	hypothetical protein
1548	 39.01	0	1606663..1608618	-	651	125624430	gyrB	llmg_1631	-	DNA gyrase subunit B
1549	 36.57	0	1608772..1609419	-	215	125624431	-	llmg_1632	-	putative hydrolase
1550	 35.11	0	1609485..1610330	-	281	125624432	-	llmg_1633	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.