IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.99   STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
88	 40.12	+1	86633..87913	-	426	125622970	cysD	llmg_0091	-	O-acetylhomoserine sulfhydrylase
89	 39.69	+1	88166..88999	-	277	125622971	-	llmg_0092	-	putative short-chain type dehydrogenase
90	 36.32	0	89403..89870	+	155	125622972	-	llmg_0093	-	hypothetical protein
91	 34.85	0	89996..90193	+	65	125622973	-	llmg_0094	-	hypothetical protein
92	 36.88	0	90229..90849	+	206	125622974	-	llmg_0095	-	putative esterase
93	 40.17	+1	90917..92086	+	389	125622975	-	llmg_0096	-	putatve glyoxylase protein
94	 37.56	0	92097..92687	+	196	125622976	-	llmg_0097	-	putative flavoprotein oxygenase
95	 32.00	-1	92769..92918	-	49	125622977	rpmG	llmg_0098	-	50S ribosomal protein L33
96	 44.25	+2	92948..93121	-	57	125622978	rpmF	llmg_0099	-	50S ribosomal protein L32
97	 40.07	+1	93484..95265	+	593	125622979	cadA	llmg_0100	-	cation-transporting ATPase
98	 38.40	0	95452..96300	+	282	125622980	-	llmg_0101	-	hypothetical protein
99	 35.88	0	96310..97095	-	261	125622981	parA	llmg_0102	-	chromosome partitioning protein parA
100	 38.89	0	97150..98409	-	419	125622982	cshA	llmg_0103	-	recombination factor protein RarA
101	 36.46	0	98453..98995	-	180	125622983	-	llmg_0104	-	acetyltransferase
102	 36.11	0	99114..99581	+	155	125622984	-	llmg_0105	-	hypothetical protein
103	 37.97	0	99611..101164	+	517	125622985	-	llmg_0106	-	ABC transporter ATP-binding protein
104	 32.63	0	101239..101523	+	94	125622986	-	llmg_0107	-	hypothetical protein
105	 37.66	0	101605..102297	+	230	125622987	-	llmg_0108	-	S-adenosylmethionine-dependent methyltransferase
106	 39.02	0	102281..102772	+	163	125622988	-	llmg_0109	-	hypothetical protein
107	 40.78	+1	102785..103738	+	317	125622989	prmA	llmg_0110	-	ribosomal protein L11 methyltransferase
108	 38.38	0	103858..104610	+	250	125622990	-	llmg_0111	-	hypothetical protein
109	 37.51	0	104640..105596	+	318	125622991	-	llmg_0112	-	putative xylanase/chitin deacetylase
110	 39.09	0	105797..108019	+	740	125622992	relA	llmg_0113	-	GTP pyrophosphokinase
111	 36.11	0	108034..108969	-	311	125622993	-	llmg_0114	-	glycosyl transferase family protein
112	 35.09	0	109228..109683	+	151	125622994	dtd	llmg_0115	-	D-tyrosyl-tRNA deacylase
113	 35.02	0	109676..110680	+	334	125622995	-	llmg_0116	-	hypothetical protein
114	 32.53	0	110683..111306	+	207	125622996	-	llmg_0117	-	hypothetical protein
115	 42.49	+1	111440..112837	+	465	125622997	ctrA	llmg_0118	-	putative amino-acid transporter
116	 36.80	0	112986..113648	+	220	125622998	-	llmg_0119	-	putative acyltransferase
117	 32.95	0	113679..114197	-	172	125622999	rmaD	llmg_0120	-	MarR family transcriptional regulator
118	 37.80	0	114407..114697	+	96	125623000	-	llmg_0121	-	hypothetical protein
119	 38.71	0	114793..115554	+	253	125623001	tnp904	llmg_0122	-	transposase for insertion sequence element IS904A
120	 37.21	0	115603..116247	-	214	125623002	acpD	llmg_0123	-	AcpD protein
121	 38.99	0	116422..119019	+	865	125623003	secA	llmg_0124	-	preprotein translocase subunit SecA
122	 37.57	0	119149..120186	+	345	125623004	aroF	llmg_0125	-	phospho-2-dehydro-3-deoxyheptonate aldolase
123	 41.95	+1	120435..120701	+	88	125623005	ptsH	llmg_0126	-	phosphocarrier protein HPr
124	 40.91	+1	120704..122431	+	575	125623006	ptsI	llmg_0127	-	phosphoenolpyruvate-protein phosphotransferase
125	 33.00	0	123002..123301	-	99	125623007	-	llmg_0128	-	hypothetical protein
126	 35.42	0	123407..123694	+	95	125623008	-	llmg_0129	-	hypothetical protein
127	 36.40	0	123974..124918	-	314	125623009	-	llmg_0130	-	hypothetical protein
128	 40.46	+1	125070..126458	+	462	125623010	-	llmg_0131	-	hypothetical protein
129	 34.58	0	126644..126964	+	106	125623011	sugE	llmg_0132	-	small multidrug resistance protein
130	 36.08	0	127087..128250	+	387	125623012	blt	llmg_0133	-	multidrug resistance protein
131	 32.70	0	128554..129504	+	316	125623013	-	llmg_0134	-	bactoprenol glucosyl transferase
132	 32.61	0	129488..130723	+	411	125623014	-	llmg_0135	-	hypothetical protein
133	 30.27	-1	131117..131638	+	173	125623015	-	llmg_0136	-	putative sensor protein kinase
134	 29.40	-1	131705..133078	+	457	125623016	-	llmg_0137	-	permease
135	 38.76	0	134045..135241	+	398	125623017	argG	llmg_0138	-	argininosuccinate synthase
136	 35.58	0	135270..136649	+	459	125623018	argH	llmg_0139	-	argininosuccinate lyase
137	 40.05	+1	136666..137811	-	381	125623019	pmrB	llmg_0140	-	multidrug resistance efflux pump
138	 33.16	0	138054..138629	+	191	125623020	-	llmg_0141	-	putative transcriptional regulator
139	 34.75	0	138786..139139	+	117	125623021	rnpA	llmg_0142	-	ribonuclease P
140	 37.16	0	139136..139945	+	269	125623022	-	llmg_0143	-	preprotein translocase subunit
141	 38.69	0	140033..140947	+	304	125623023	-	llmg_0144	-	hypothetical protein
142	 45.93	+2	141079..141213	+	44	125623024	rpmH	llmg_0145	-	50S ribosomal protein L34
143	 35.31	0	141388..142299	+	303	125623025	-	llmg_0146	-	aryl-alcohol dehydrogenase
144	 35.25	0	142360..142620	+	86	125623026	-	llmg_0147	-	lambda repressor-like, DNA-binding
145	 34.83	0	142809..143009	+	66	125623027	-	llmg_0148	-	hypothetical protein
146	 32.75	0	143092..143772	+	226	125623028	-	llmg_0149	-	hypothetical protein
147	 36.70	0	144067..144333	+	88	125623029	-	llmg_0150	-	hypothetical protein
148	 40.74	+1	144333..144764	+	143	125623030	-	llmg_0151	-	putative Hollyday junction resolvase
149	 33.95	0	144865..145188	+	107	125623031	-	llmg_0152	-	hypothetical protein
150	 37.32	0	145218..145769	-	183	125623032	-	llmg_0153	-	hypothetical protein
151	 36.13	0	145859..146644	-	261	125623033	cbr	llmg_0154	-	carbonyl reductase
152	 35.58	0	146664..146975	-	103	125623034	-	llmg_0155	-	hypothetical protein
153	 36.77	0	146985..147770	-	261	125623035	dltE	llmg_0156	-	oxidoreductase dltE
154	 34.43	0	147888..148433	+	181	125623036	tetR	llmg_0157	-	transcriptional regulator
155	 36.42	0	148498..150441	-	647	125623037	glgB	llmg_0158	-	GlgB protein
156	 35.51	0	150562..150882	-	106	125623038	-	llmg_0159	-	hypothetical protein
157	 35.05	0	151041..151679	+	212	125623039	-	llmg_0160	-	oxygen-insensitive NAD(P)H nitroreductase
158	 30.97	-1	151722..152270	+	182	125623040	-	llmg_0161	-	putative HTH-type transcriptional regulator
159	 35.40	0	152726..154126	+	466	125623041	-	llmg_0162	-	hypothetical protein
160	 29.21	-1	154139..154453	+	104	125623042	epsR	llmg_0163	-	transcriptional regulator
161	 40.91	+1	154740..155888	-	382	125623043	tgt	llmg_0164	-	queuine tRNA-ribosyltransferase
162	 34.93	0	156088..156777	+	229	125623044	-	llmg_0165	-	hypothetical protein
163	 36.53	0	158195..158632	-	145	125623045	-	llmg_0167	-	hypothetical protein
164	 38.17	0	158769..159554	+	261	125623046	-	llmg_0168	-	deoxyribonuclease
165	 34.58	0	159944..160183	+	79	125623047	-	llmg_0169	-	hypothetical protein
166	 36.62	0	160381..161961	+	526	125623048	-	llmg_0170	-	hypothetical protein
167	 40.00	+1	162090..163304	+	404	125623049	aspC	llmg_0171	-	aminotransferase AlaT
168	 38.78	0	163457..164245	+	262	125623050	codY	llmg_0172	-	transcriptional repressor CodY
169	 32.50	0	164352..164471	+	39	125623051	-	llmg_0173	-	hypothetical protein
170	 39.54	0	164523..164828	+	101	125623052	gatC	llmg_0174	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
171	 38.60	0	164828..166288	+	486	125623053	gatA	llmg_0175	-	amidase
172	 39.19	0	166313..167746	+	477	125623054	gatB	llmg_0176	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
173	 40.33	+1	167870..169369	+	499	125623055	-	llmg_0177	-	amidase
174	 40.94	+1	169436..170776	-	446	125623056	dinF	llmg_0178	-	damage-inducible protein DinF
175	 40.91	+1	170956..171153	-	65	125623057	cspE	llmg_0180	-	cold shock-like protein cspE
176	 33.15	0	171272..171805	+	177	125623058	-	llmg_0181	-	5-formyltetrahydrofolate cyclo-ligase family protein
177	 37.23	0	171795..172487	+	230	125623059	-	llmg_0182	-	rhomboid-related protein 1
178	 34.95	0	172586..173017	+	143	125623060	-	llmg_0183	-	hypothetical protein
179	 35.70	0	173038..173418	+	126	125623061	-	llmg_0184	-	putative lactoylglutathione lyase
180	 35.04	0	173529..174581	+	350	125623062	-	llmg_0185	-	acetyltransferase
181	 38.92	0	174930..176021	+	363	125623063	-	llmg_0186	-	hypothetical protein
182	 43.77	+2	176121..177605	+	494	125623064	celB	llmg_0187	-	cellobiose-specific PTS system IIC component
183	 34.78	0	177731..177937	+	68	125623065	-	llmg_0188	-	hypothetical protein
184	 34.36	0	177934..178128	+	64	125623066	-	llmg_0189	-	hypothetical protein
185	 39.67	+1	178257..179693	+	478	125623067	bglS	llmg_0190	-	Beta-glucosidase A
186	 37.31	0	179759..180211	+	150	125623068	dut	llmg_0191	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
187	 37.06	0	180304..181644	+	446	125623069	-	llmg_0192	-	5'-nucleotidase precursor
35.99	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.