IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1266	 37.70	0	1303798..1305078	-	426	125624148	potA	llmg_1328	-	spermidine/putrescine ABC transporter ATP-binding protein
1267	 38.33	0	1305539..1306438	-	299	125624149	murB	llmg_1329	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1268	 37.22	0	1306481..1307149	-	222	125624150	-	llmg_1330	-	hypothetical protein
1269	 39.17	0	1307334..1308224	-	296	125624151	thrB	llmg_1331	-	homoserine kinase
1270	 36.52	0	1308229..1309515	-	428	125624152	hom	llmg_1332	-	homoserine dehydrogenase
1271	 31.61	-1	1309696..1310334	-	212	125624153	dukB	llmg_1333	-	deoxynucleoside kinase
1272	 36.06	0	1310463..1311746	-	427	125624154	folC	llmg_1334	-	FolC protein
1273	 33.53	0	1311762..1312262	-	166	125624155	-	llmg_1335	-	hypothetical protein
1274	 34.64	0	1312265..1313338	-	357	125624156	folP	llmg_1336	-	dihydropteroate synthase
1275	 33.81	0	1313335..1314384	-	349	125624157	folE	llmg_1337	-	FolE protein
1276	 35.04	0	1314464..1314814	-	116	125624158	folB	llmg_1338	-	FolB protein
1277	 33.67	0	1314868..1315455	-	195	125624159	engB	llmg_1339	-	GTPase EngB
1278	 34.87	0	1315452..1316687	-	411	125624160	clpX	llmg_1340	-	ATP-dependent protease ATP-binding subunit
1279	 35.11	0	1316936..1317442	-	168	125624161	dfrA	llmg_1342	-	DfrA protein
1280	 35.03	0	1317707..1318297	+	196	125624162	spoU	llmg_1343	-	putative rRNA methyltransferase
1281	 40.23	+1	1318515..1318862	+	115	125624163	-	llmg_1344	-	hypothetical protein
1282	 37.47	0	1318899..1320203	-	434	125624164	pbuX	llmg_1345	-	xanthine/uracil permease
1283	 37.21	0	1320261..1320854	-	197	125624165	xpt	llmg_1346	-	xanthine phosphoribosyltransferase
1284	 36.49	0	1321531..1321815	-	94	125624166	-	llmg_1347	-	hypothetical protein
1285	 31.69	-1	1321802..1322167	-	121	125624167	-	llmg_1348	-	hypothetical protein
1286	 36.32	0	1322595..1323665	-	356	125624168	-	llmg_1349	-	hypothetical protein
1287	 35.76	0	1323752..1324327	-	191	125624169	telC	llmg_1350	-	putative tellurium resistance protein
1288	 35.24	0	1324343..1324918	-	191	125624170	telB	llmg_1351	-	putative tellurium resistance protein
1289	 35.26	0	1324928..1325551	-	207	125624171	telA	llmg_1352	-	putative tellurium resistance protein
1290	 36.52	0	1325631..1326728	-	365	125624172	-	llmg_1353	-	putative tellurite resistance protein
1291	 31.96	-1	1326746..1328350	-	534	125624173	-	llmg_1354	-	hypothetical protein
1292	 33.82	0	1328376..1329197	-	273	125624174	-	llmg_1355	-	hypothetical protein
1293	 35.86	0	1329199..1330305	-	368	125624175	-	llmg_1356	-	hypothetical protein
1294	 32.83	0	1330302..1331498	-	398	125624176	-	llmg_1357	-	hypothetical protein
1295	 35.29	0	1331491..1332717	-	408	125624177	-	llmg_1358	-	hypothetical protein
1296	 36.49	0	1334029..1334313	-	94	125624178	-	llmg_1359	-	hypothetical protein
1297	 31.69	-1	1334300..1334665	-	121	125624179	-	llmg_1360	-	hypothetical protein
1298	 31.84	-1	1334736..1335809	-	357	125624180	xerS	llmg_1361	-	site-specific tyrosine recombinase XerS
1299	 33.70	0	1335893..1336165	-	90	125624181	-	llmg_1362	-	hypothetical protein
1300	 32.62	0	1337148..1337708	-	186	125624182	-	llmg_1364	-	hypothetical protein
1301	 28.48	-2	1338108..1338746	-	212	125624183	-	llmg_1365	-	hypothetical protein
1302	 27.22	-2	1339191..1341710	-	839	125624184	-	llmg_1366	-	hypothetical protein
1303	 36.55	0	1342117..1342956	-	279	125624185	tnp981	llmg_1367	-	transposase for insertion sequence element IS981K
1304	 36.78	0	1342968..1343228	-	86	125624186	-	llmg_1368	-	putative transposase helper protein for IS981
1305	 25.88	-2	1343265..1343921	-	218	125624187	-	llmg_1369	-	hypothetical protein
1306	 36.07	0	1344187..1348370	-	584	125624189	-	llmg_1369a	-	hypothetical protein
1307	 34.89	0	1345518..1347317	-	599	125624188	matR	llmg_1371	-	maturase
1308	 28.01	-2	1348370..1348726	-	118	125624190	-	llmg_1373	-	hypothetical protein
1309	 31.49	-1	1348769..1349419	-	216	125624191	ltrE	llmg_1374	-	LtrE protein
1310	 35.01	0	1349704..1350180	-	158	125624192	ltrD	llmg_1375	-	LtrD protein
1311	 38.60	0	1350253..1351905	-	550	125624193	ltrC	llmg_1376	-	LtrC protein
1312	 35.94	0	1351957..1353723	-	588	125624194	-	llmg_1377	-	hypothetical protein
1313	 31.20	-1	1353704..1354219	-	171	125624195	-	llmg_1378	-	hypothetical protein
1314	 37.47	0	1354233..1355417	-	394	125624196	-	llmg_1379	-	Zn peptidase
1315	 32.31	-1	1355479..1355673	-	64	125624197	-	llmg_1381	-	hypothetical protein
1316	 39.81	+1	1355782..1356846	-	354	125624198	-	llmg_1382	-	hypothetical protein
1317	 37.90	0	1356872..1358710	-	612	125624199	traD	llmg_1383	-	conjugal transfer protein TraD
1318	 33.93	0	1358707..1359210	-	167	125624200	-	llmg_1384	-	hypothetical protein
1319	 31.05	-1	1359189..1359407	-	72	125624201	-	llmg_1385	-	hypothetical protein
1320	 36.38	0	1359423..1360736	-	437	125624202	-	llmg_1386	-	hypothetical protein
1321	 37.80	0	1360736..1360981	-	81	125624203	-	llmg_1387	-	hypothetical protein
1322	 35.35	0	1360982..1361674	-	230	125624204	-	llmg_1388	-	hypothetical protein
1323	 31.13	-1	1361700..1362017	-	105	125624205	-	llmg_1389	-	hypothetical protein
1324	 38.81	0	1362027..1364639	-	870	125624206	-	llmg_1390	-	hypothetical protein
1325	 37.65	0	1364643..1366889	-	748	125624207	-	llmg_1391	-	hypothetical protein
1326	 33.33	0	1366987..1367340	-	117	125624208	-	llmg_1392	-	hypothetical protein
1327	 38.78	0	1367342..1368130	-	262	125624209	-	llmg_1393	-	hypothetical protein
1328	 37.09	0	1368421..1368819	-	132	125624210	-	llmg_1395	-	hypothetical protein
1329	 34.50	0	1368792..1368962	-	56	125624211	-	llmg_1396	-	hypothetical protein
1330	 25.16	-2	1368981..1369139	-	52	125624212	-	llmg_1397	-	hypothetical protein
1331	 37.59	0	1369190..1372921	-	1243	125624213	cluA	llmg_1398	-	cell surface antigen I/II precursor
1332	 39.39	0	1373131..1374153	-	340	125624214	-	llmg_1399	-	hypothetical protein
1333	 33.67	0	1374171..1374470	-	99	125624215	-	llmg_1400	-	hypothetical protein
1334	 35.54	0	1375104..1375466	-	120	125624216	-	llmg_1402	-	hypothetical protein
1335	 30.19	-1	1375896..1376435	-	179	125624217	-	llmg_1403	-	hypothetical protein
1336	 37.12	0	1376846..1377109	-	87	125624218	-	llmg_1406	-	hypothetical protein
1337	 34.85	0	1377114..1377311	-	65	125624219	-	llmg_1407	-	hypothetical protein
1338	 29.80	-1	1377325..1377522	-	65	125624220	-	llmg_1408	-	hypothetical protein
1339	 30.57	-1	1377548..1378417	-	289	125624221	-	llmg_1409	-	hypothetical protein
1340	 35.09	0	1378410..1378865	-	151	125624222	-	llmg_1410	-	hypothetical protein
1341	 31.95	-1	1379125..1380063	-	312	125624223	-	llmg_1411	-	hypothetical protein
1342	 39.60	0	1380599..1381588	-	329	125624224	guaC	llmg_1412	-	guanosine 5'-monophosphate oxidoreductase
1343	 32.04	-1	1381851..1382468	-	205	125624225	-	llmg_1413	-	hypothetical protein
1344	 38.11	0	1382610..1383383	-	257	125624226	nagD	llmg_1414	-	putative N-acetylglucosamine catabolic protein
1345	 33.20	0	1383432..1384163	-	243	125624227	-	llmg_1415	-	hypothetical protein
1346	 39.68	+1	1384265..1384705	-	146	125624228	-	llmg_1416	-	hypothetical protein
1347	 36.89	0	1384807..1385622	-	271	125624229	-	llmg_1417	-	hypothetical protein
1348	 34.47	0	1385668..1386807	-	379	125624230	hemN	llmg_1418	-	coproporphyrinogen III oxidase
1349	 38.07	0	1386995..1387522	-	175	125624231	-	llmg_1419	-	putative transcriptional regulator
1350	 36.36	0	1387504..1388823	-	439	125624232	-	llmg_1420	-	hypothetical protein
1351	 35.07	0	1389161..1389562	-	133	125624233	-	llmg_1421	-	hypothetical protein
1352	 37.91	0	1389794..1390711	-	305	125624234	pacA	llmg_1422	-	penicillin acylase
1353	 41.37	+1	1390877..1391635	-	252	125624235	tpiA	llmg_1424	-	triosephosphate isomerase
1354	 35.21	0	1391768..1392619	-	283	125624236	-	llmg_1425	-	RpiR family transcriptional regulator
1355	 38.61	0	1392681..1394633	-	650	125624237	-	llmg_1426	-	sucrose-specific PTS system IIBC component
1356	 36.80	0	1394669..1395562	-	297	125624238	murQ	llmg_1427	-	N-acetylmuramic acid-6-phosphate etherase
1357	 35.03	0	1395555..1396616	-	353	125624239	-	llmg_1428	-	hypothetical protein
1358	 38.07	0	1396766..1397737	-	323	125624240	ldhX	llmg_1429	-	L-lactate dehydrogenase
1359	 34.88	0	1397821..1398723	-	300	125624241	ribC	llmg_1430	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1360	 36.76	0	1398755..1399747	-	330	125624242	truB	llmg_1431	-	tRNA pseudouridine synthase B
1361	 38.33	0	1399886..1400605	-	239	125624243	-	llmg_1432	-	hypothetical protein
1362	 34.81	0	1400795..1403095	-	766	125624244	-	llmg_1433	-	putative secreted protein
1363	 35.24	0	1403462..1403986	+	174	125624245	-	llmg_1434	-	putative secreted protein
1364	 34.42	0	1404048..1404506	+	152	125624246	-	llmg_1435	-	putative secreted protein
1365	 36.55	0	1404756..1405595	-	279	125624247	tnp981	llmg_1437	-	transposase for insertion sequence element IS981L
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.