IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1137	 35.52	0	1160600..1161103	+	167	125624019	-	llmg_1189	-	hypothetical protein
1138	 33.77	0	1161134..1161595	+	153	125624020	-	llmg_1190	-	hypothetical protein
1139	 30.54	-1	1161573..1162289	+	238	125624021	xerD	llmg_1191	-	site-specific tyrosine recombinase XerD-like protein
1140	 31.55	-1	1162320..1163048	+	242	125624022	scpA	llmg_1192	-	segregation and condensation protein A
1141	 34.57	0	1163041..1163607	+	188	125624023	scpB	llmg_1193	-	segregation and condensation protein B
1142	 37.98	0	1163540..1164313	+	257	125624024	rluB	llmg_1194	-	pseudouridylate synthase
1143	 34.62	0	1164663..1165283	+	206	125624025	-	llmg_1195	-	hypothetical protein
1144	 33.33	0	1165594..1166181	+	195	125624026	-	llmg_1196	-	hypothetical protein
1145	 38.75	0	1166235..1166825	+	196	125624027	-	llmg_1197	-	hypothetical protein
1146	 37.22	0	1166862..1167350	+	162	125624028	-	llmg_1198	-	hypothetical protein
1147	 36.47	0	1167469..1168296	+	275	125624029	-	llmg_1200	-	hypothetical protein
1148	 38.22	0	1168384..1168731	+	115	125624030	-	llmg_1201	-	hypothetical protein
1149	 37.18	0	1168869..1170686	+	605	125624031	-	llmg_1202	-	ABC transporter ABC binding and permease protein
1150	 33.84	0	1170670..1172454	+	594	125624032	-	llmg_1203	-	ABC transporter ABC binding and permease protein
1151	 34.52	0	1172575..1173333	+	252	125624033	hdiR	llmg_1204	-	HTH-type transcriptional regulator HdiR
1152	 30.16	-1	1173347..1173535	+	62	125624034	-	llmg_1205	-	hypothetical protein
1153	 40.50	+1	1175758..1176273	+	171	125624035	rplJ	llmg_1207	-	50S ribosomal protein L10
1154	 40.71	+1	1176343..1176708	+	121	125624036	rplL	llmg_1208	-	50S ribosomal protein L7/L12
1155	 37.50	0	1177158..1177541	+	127	125624037	rmaX	llmg_1209	-	MarR family transcriptional regulator
1156	 40.26	+1	1177542..1179101	+	519	125624038	-	llmg_1210	-	multidrug resistance protein
1157	 36.20	0	1179098..1179934	+	278	125624039	-	llmg_1211	-	hypothetical protein
1158	 29.05	-1	1181520..1181846	+	108	125624040	-	llmg_1214	-	hypothetical protein
1159	 31.32	-1	1181861..1183993	+	710	125624041	-	llmg_1215	-	hypothetical protein
1160	 37.98	0	1184278..1185030	+	250	125624042	thiM	llmg_1216	-	hydroxyethylthiazole kinase
1161	 36.95	0	1185043..1185843	+	266	125624043	thiD1	llmg_1217	-	phosphomethylpyrimidine kinase
1162	 37.44	0	1185836..1186492	+	218	125624044	thiE	llmg_1218	-	thiamine-phosphate pyrophosphorylase
1163	 36.20	0	1186831..1188330	+	499	125624045	dltA	llmg_1219	-	D-alanine--D-alanyl carrier protein ligase
1164	 34.89	0	1188330..1189553	+	407	125624046	dltB	llmg_1220	-	protein dltB (basic membrane protein) (BMP)
1165	 35.42	0	1189589..1189828	+	79	125624047	dltC	llmg_1221	-	D-alanine--poly(phosphoribitol) ligase subunit 2
1166	 32.40	0	1189818..1191104	+	428	125624048	dltD	llmg_1222	-	D-alanine transfer protein DltD
1167	 35.27	0	1191579..1194311	+	910	125624049	mgtA	llmg_1223	-	cation-transporting P-ATPase
1168	 34.71	0	1194404..1195057	+	217	125624050	-	llmg_1224	-	transcriptional regulator
1169	 34.70	0	1195217..1197490	+	757	125624051	metE	llmg_1225	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1170	 33.22	0	1197480..1198337	+	285	125624052	metF	llmg_1226	-	5,10-methylenetetrahydrofolate reductase
1171	 35.29	0	1198699..1199721	+	340	125624053	aroH	llmg_1227	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1172	 19.67	-2	1199843..1200025	-	60	125624054	-	llmg_1228	-	hypothetical protein
1173	 28.07	-2	1200210..1200380	+	56	125624055	-	llmg_1229	-	hypothetical protein
1174	 29.15	-1	1200421..1201662	+	413	125624056	-	llmg_1230	-	hypothetical protein
1175	 37.63	0	1202589..1203170	-	193	125624057	-	llmg_1231	-	hypothetical protein
1176	 38.14	0	1203241..1203531	+	96	125624058	-	llmg_1232	-	hypothetical protein
1177	 36.31	0	1203668..1204507	-	279	125624059	tnp981	llmg_1233	-	transposase for insertion element IS981J
1178	 36.78	0	1204519..1204779	-	86	125624060	-	llmg_1234	-	hypothetical protein
1179	 27.55	-2	1205420..1206076	-	218	125624061	-	llmg_1235	-	cyclic nucleotide-binding domain-containing protein
1180	 27.45	-2	1206198..1206809	+	203	125624062	-	llmg_1236	-	hypothetical protein
1181	 33.55	0	1207355..1208293	+	312	125624063	ceo	llmg_1237	-	N5-carboxyethyl-ornithine synthase
1182	 36.82	0	1209297..1209497	+	66	125624064	cspD2	llmg_1238	-	cold shock-like protein cspD2
1183	 33.33	0	1210978..1212060	+	360	125624065	-	llmg_1240	-	hypothetical protein
1184	 36.85	0	1212077..1212787	+	236	125624066	-	llmg_1241	-	hypothetical protein
1185	 40.99	+1	1212815..1213036	+	73	125624067	-	llmg_1242	-	hypothetical protein
1186	 34.63	0	1213067..1215454	+	795	125624068	-	llmg_1243	-	hypothetical protein
1187	 37.00	0	1215435..1216742	+	435	125624069	-	llmg_1244	-	hypothetical protein
1188	 32.10	-1	1216780..1217592	+	270	125624070	-	llmg_1245	-	hypothetical protein
1189	 33.64	0	1217893..1218216	+	107	125624071	arsR	llmg_1246	-	regulator of arsenical resistance
1190	 35.10	0	1218231..1218626	+	131	125624072	arsD	llmg_1247	-	arsenical resistance operon trans-acting repressor arsD
1191	 35.90	0	1218639..1220354	+	571	125624073	arsA	llmg_1248	-	arsenical pump-driving ATPase
1192	 36.46	0	1220371..1222032	+	553	125624074	-	llmg_1249	-	hypothetical protein
1193	 35.04	0	1222048..1223100	+	350	125624075	-	llmg_1250	-	putative arsenical-resistance protein
1194	 25.98	-2	1223109..1223312	+	67	125624076	-	llmg_1251	-	hypothetical protein
1195	 27.61	-2	1223857..1224258	-	133	125624077	-	llmg_1252	-	hypothetical protein
1196	 32.98	0	1224964..1225821	+	285	125624078	-	llmg_1253	-	hypothetical protein
1197	 32.34	-1	1226569..1226769	+	66	125624079	-	llmg_1254	-	hypothetical protein
1198	 32.84	0	1226900..1227100	+	66	125624080	cspC	llmg_1255	-	cold shock protein cspC
1199	 36.32	0	1227378..1227578	+	66	125624081	cspD	llmg_1256	-	cold shock protein cspD
1200	 41.25	+1	1228094..1228333	+	79	125624082	-	llmg_1257	-	hypothetical protein
1201	 32.09	-1	1228363..1228923	+	186	125624083	-	llmg_1258	-	hypothetical protein
1202	 29.10	-1	1228933..1229121	+	62	125624084	-	llmg_1259	-	hypothetical protein
1203	 36.40	0	1229142..1229402	+	86	125624085	-	llmg_1260	-	hypothetical protein
1204	 35.84	0	1229451..1230209	-	252	125624086	-	llmg_1261	-	putative transposase helper protein for IS712F
1205	 39.95	+1	1230221..1231444	-	407	125624087	tnp712	llmg_1262	-	transposase for insertion sequence element IS712F
1206	 36.27	0	1231488..1231862	+	124	125624088	-	llmg_1263	-	hypothetical protein
1207	 36.78	0	1232254..1232514	+	86	125624089	-	llmg_1264	-	putative transposase helper protein for IS981
1208	 36.91	0	1232526..1233140	+	204	125624090	tnp981	llmg_1265	-	transposase for insertion sequence element IS981J
1209	 32.76	0	1234522..1234869	+	115	125624091	-	llmg_1267	-	hypothetical protein
1210	 34.85	0	1236405..1237460	+	351	125624092	xerS	llmg_1268	-	site-specific tyrosine recombinase XerS
1211	 39.93	+1	1237544..1237831	+	95	125624093	-	llmg_1269	-	hypothetical protein
1212	 35.11	0	1238314..1239384	+	356	125624094	xerS	llmg_1270	-	site-specific tyrosine recombinase XerS
1213	 38.53	0	1239434..1240780	-	448	125624095	gidC	llmg_1271	-	tRNA (uracil-5-)-methyltransferase Gid
1214	 38.03	0	1240852..1242978	-	708	125624096	topA	llmg_1272	-	DNA topoisomerase I
1215	 34.86	0	1243244..1244092	-	282	125624097	smf	llmg_1273	-	Smf protein
1216	 37.53	0	1244240..1244620	-	126	125624098	aldR	llmg_1274	-	putative regulator AldR
1217	 35.44	0	1244660..1245370	-	236	125624099	aldB	llmg_1275	-	AldB protein
1218	 38.05	0	1245506..1246756	-	416	125624100	ilvA	llmg_1276	-	threonine dehydratase
1219	 41.64	+1	1246815..1247837	-	340	125624101	ilvC	llmg_1277	-	ketol-acid reductoisomerase
1220	 40.25	+1	1247882..1248358	-	158	125624102	ilvN	llmg_1278	-	acetolactate synthase 3 regulatory subunit
1221	 41.22	+1	1248351..1250075	-	574	125624103	ilvB	llmg_1279	-	acetolactate synthase catalytic subunit
1222	 43.61	+2	1250090..1251802	-	570	125624104	ilvD	llmg_1280	-	dihydroxy-acid dehydratase
1223	 32.14	-1	1251922..1252758	-	278	125624105	-	llmg_1281	-	putative ABC transporter ATP-binding protein
1224	 34.72	0	1252718..1253293	-	191	125624106	leuD	llmg_1282	-	isopropylmalate isomerase small subunit
1225	 41.95	+1	1253342..1253875	-	177	125624107	-	llmg_1283	-	hypothetical protein
1226	 42.19	+1	1253875..1255251	-	458	125624108	leuC	llmg_1284	-	isopropylmalate isomerase large subunit
1227	 39.27	0	1258411..1259370	+	319	125624109	-	llmg_1287	-	hypothetical protein
1228	 30.03	-1	1259403..1260188	-	261	125624110	hisK	llmg_1288	-	histidinol-phosphatase
1229	 36.93	0	1260189..1260827	-	212	125624111	hisI	llmg_1289	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
1230	 36.67	0	1260824..1261603	-	259	125624112	hisF	llmg_1290	-	imidazoleglycerol-phosphate synthase cyclase
1231	 34.82	0	1261572..1262312	-	246	125624113	hisA	llmg_1291	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
1232	 37.11	0	1262312..1262920	-	202	125624114	hisH	llmg_1292	-	imidazole glycerol phosphate synthase subunit HisH
1233	 32.57	0	1262971..1263759	-	262	125624115	-	llmg_1293	-	hypothetical protein
1234	 37.83	0	1263756..1264355	-	199	125624116	hisB	llmg_1294	-	imidazoleglycerol-phosphate dehydratase
1235	 37.84	0	1264356..1265663	-	435	125624117	hisD	llmg_1295	-	HisD protein
1236	 34.77	0	1265647..1266273	-	208	125624118	hisG	llmg_1296	-	ATP phosphoribosyltransferase catalytic subunit
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.