IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1062	 35.03	0	1072316..1073257	-	313	125623944	galU	llmg_1113	-	UDP--glucose-1-phosphate uridylyltransferase
1063	 39.46	0	1073311..1074339	-	342	125623945	gpsA	llmg_1114	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1064	 30.14	-1	1074531..1075157	+	208	125623946	-	llmg_1115	-	XpaC-like protein
1065	 34.44	0	1075298..1076476	+	392	125623947	telA1	llmg_1116	-	toxic anion resistance protein
1066	 42.56	+1	1076647..1077795	+	382	125623948	nagA	llmg_1117	-	NagA protein
1067	 43.30	+2	1078182..1079204	+	340	125623949	pfk	llmg_1118	-	6-phosphofructokinase
1068	 40.69	+1	1079292..1080800	+	502	125623950	pyk	llmg_1119	-	pyruvate kinase
1069	 41.10	+1	1080918..1081895	+	325	125623951	ldh	llmg_1120	-	L-lactate dehydrogenase
1070	 42.35	+1	1082012..1082965	-	317	125623952	nupC	llmg_1121	-	purine/cytidine ABC transporter permease protein
1071	 39.36	0	1082962..1084056	-	364	125623953	nupB	llmg_1122	-	purine/cytidine ABC transporter permease protein
1072	 40.83	+1	1084049..1085569	-	506	125623954	nupA	llmg_1123	-	purine/cytidine ABC transporter ATP-binding protein
1073	 34.80	0	1085751..1086566	-	271	125623955	-	llmg_1124	-	hypothetical protein
1074	 35.86	0	1086608..1088230	-	540	125623956	fbpA	llmg_1125	-	putative fibronectin-binding protein-like protein A
1075	 34.01	0	1088535..1088978	+	147	125623957	-	llmg_1126	-	hypothetical protein
1076	 45.65	+2	1089321..1093370	+	1349	125623958	-	llmg_1127	-	cell wall surface anchor family protein
1077	 43.90	+2	1093388..1093633	+	81	125623959	-	llmg_1128	-	hypothetical protein
1078	 41.67	+1	1093651..1094226	+	191	125623960	-	llmg_1129	-	cell wall surface anchor family protein
1079	 28.27	-2	1094974..1095348	+	124	125623961	-	llmg_1130	-	hypothetical protein
1080	 35.04	0	1095546..1096484	+	312	125623962	panE	llmg_1131	-	2-dehydropantoate 2-reductase
1081	 33.16	0	1096630..1097802	+	390	125623963	sbcD	llmg_1132	-	nuclease SbcCD subunit D
1082	 31.90	-1	1097805..1100945	+	1046	125623964	sbcC	llmg_1133	-	nuclease sbcCD subunit C
1083	 30.74	-1	1101195..1101425	+	76	125623965	-	llmg_1134	-	hypothetical protein
1084	 34.54	0	1101504..1101917	-	137	125623966	-	llmg_1135	-	hypothetical protein
1085	 31.65	-1	1102206..1102919	+	237	125623967	mtsB	llmg_1136	-	manganese ABC transporter ATP binding protein
1086	 32.14	-1	1102926..1103765	+	279	125623968	mtsC	llmg_1137	-	manganese transport system membrane protein
1087	 33.33	0	1103765..1104712	+	315	125623969	mtsA	llmg_1138	-	manganese ABC transporter substrate binding protein
1088	 33.79	0	1105019..1105885	+	288	125623970	-	llmg_1139	-	hypothetical protein
1089	 36.83	0	1105938..1107194	+	418	125623971	-	llmg_1140	-	hypothetical protein
1090	 28.70	-2	1107609..1107932	+	107	125623972	-	llmg_1141	-	putative transcriptional regulator
1091	 39.12	0	1108260..1109435	-	391	125623973	tnp905	llmg_1142	-	transposase for insertion sequence element IS905F
1092	 32.36	-1	1109730..1110245	+	171	125623974	-	llmg_1143	-	hypothetical protein
1093	 36.19	0	1110256..1111095	-	279	125623975	tnp981	llmg_1144	-	transposase for insertion sequence element IS981I
1094	 36.78	0	1111107..1111367	-	86	125623976	-	llmg_1145	-	hypothetical protein
1095	 27.64	-2	1111431..1111781	+	116	125623977	-	llmg_1146	-	hypothetical protein
1096	 32.10	-1	1113008..1113331	+	107	125623978	-	llmg_1147	-	putative transcription regulator
1097	 36.38	0	1113561..1115264	+	567	125623979	-	llmg_1148	-	hypothetical protein
1098	 36.26	0	1115457..1116413	+	318	125623980	ocd	llmg_1149	-	ornithine cyclodeaminase, mu-crystallin-like protein
1099	 36.02	0	1116424..1117206	+	260	125623981	-	llmg_1150	-	hypothetical protein
1100	 33.19	0	1117267..1118679	-	470	125623982	-	llmg_1151	-	hypothetical protein
1101	 32.91	0	1119320..1120990	+	556	125623983	-	llmg_1152	-	hypothetical protein
1102	 36.08	0	1121415..1121996	+	193	125623984	pabA	llmg_1153	-	p-aminobenzoate synthetase, component II
1103	 33.81	0	1122001..1123887	+	628	125623985	pabB	llmg_1154	-	para-aminobenzoate synthase component I
1104	 33.06	0	1124076..1124447	+	123	125623986	-	llmg_1155	-	Spx-like protein
1105	 34.86	0	1124506..1124832	+	108	125623987	-	llmg_1156	-	hypothetical protein
1106	 31.52	-1	1124929..1125093	-	54	125623988	-	llmg_1158	-	hypothetical protein
1107	 32.51	0	1125090..1125452	-	120	125623989	-	llmg_1159	-	hypothetical protein
1108	 30.86	-1	1125608..1126618	+	336	125623990	-	llmg_1160	-	hypothetical protein
1109	 35.65	0	1126850..1127323	+	157	125623991	-	llmg_1161	-	sialic acid-specific 9-O-acetylesterase
1110	 37.75	0	1127360..1128718	+	452	125623992	-	llmg_1162	-	sialic acid-specific 9-O-acetylesterase
1111	 38.91	0	1128720..1130027	+	435	125623993	-	llmg_1163	-	sugar ABC transporter substrate-binding protein
1112	 37.29	0	1130161..1131120	+	319	125623994	-	llmg_1164	-	hypothetical protein
1113	 38.83	0	1131120..1131974	+	284	125623995	-	llmg_1165	-	hypothetical protein
1114	 37.01	0	1131976..1132872	+	298	125623996	-	llmg_1166	-	putative endoglucanase
1115	 28.79	-1	1132978..1133109	+	43	125623997	-	llmg_1167	-	putative endoglucanase
1116	 38.12	0	1133124..1133750	+	208	125623998	-	llmg_1168	-	putative polysaccharide deacetylase
1117	 39.25	0	1133781..1135775	+	664	125623999	aguA	llmg_1169	-	AguA protein
1118	 31.42	-1	1135978..1137705	+	575	125624000	-	llmg_1170	-	hypothetical protein
1119	 35.21	0	1137774..1139159	-	461	125624001	-	llmg_1171	-	hypothetical protein
1120	 31.23	-1	1139152..1139913	-	253	125624002	rdrB	llmg_1172	-	transcription regulator
1121	 35.71	0	1140260..1141309	+	349	125624003	-	llmg_1173	-	hypothetical protein
1122	 29.12	-1	1141470..1142015	+	181	125624004	-	llmg_1174	-	hypothetical protein
1123	 38.40	0	1142245..1143093	+	282	125624005	rbgA	llmg_1175	-	ribosomal biogenesis GTPase
1124	 37.08	0	1143206..1143979	+	257	125624006	rnhB	llmg_1176	-	ribonuclease HII
1125	 29.24	-1	1144571..1145401	+	276	125624007	gadR	llmg_1177	-	positive regulator GadR
1126	 35.31	0	1145542..1147056	+	504	125624008	gadC	llmg_1178	-	putative glutamate/gamma-aminobutyrate antiporter
1127	 35.40	0	1147076..1148476	+	466	125624009	gadB	llmg_1179	-	glutamate decarboxylase
1128	 37.35	0	1148551..1149297	-	248	125624010	-	llmg_1180	-	hypothetical protein
1129	 39.30	0	1149457..1150479	+	340	125624011	ilvE	llmg_1181	-	branched-chain amino acid aminotransferase
1130	 38.73	0	1150512..1151123	-	203	125624012	-	llmg_1182	-	putative acetyltransferase
1131	 40.96	+1	1151292..1155761	+	1489	125624013	gltB	llmg_1183	-	glutamate synthase, large subunit
1132	 41.39	+1	1155761..1157200	+	479	125624014	gltD	llmg_1184	-	glutamate synthase subunit beta
1133	 37.54	0	1157315..1158574	+	419	125624015	lysA	llmg_1185	-	LysA protein
1134	 39.17	0	1158725..1158964	+	79	125624016	-	llmg_1186	-	hypothetical protein
1135	 39.46	0	1159140..1159955	+	271	125624017	murI	llmg_1187	-	glutamate racemase
1136	 37.62	0	1159956..1160561	+	201	125624018	-	llmg_1188	-	hypothetical protein
1137	 35.52	0	1160600..1161103	+	167	125624019	-	llmg_1189	-	hypothetical protein
1138	 33.77	0	1161134..1161595	+	153	125624020	-	llmg_1190	-	hypothetical protein
1139	 30.54	-1	1161573..1162289	+	238	125624021	xerD	llmg_1191	-	site-specific tyrosine recombinase XerD-like protein
1140	 31.55	-1	1162320..1163048	+	242	125624022	scpA	llmg_1192	-	segregation and condensation protein A
1141	 34.57	0	1163041..1163607	+	188	125624023	scpB	llmg_1193	-	segregation and condensation protein B
1142	 37.98	0	1163540..1164313	+	257	125624024	rluB	llmg_1194	-	pseudouridylate synthase
1143	 34.62	0	1164663..1165283	+	206	125624025	-	llmg_1195	-	hypothetical protein
1144	 33.33	0	1165594..1166181	+	195	125624026	-	llmg_1196	-	hypothetical protein
1145	 38.75	0	1166235..1166825	+	196	125624027	-	llmg_1197	-	hypothetical protein
1146	 37.22	0	1166862..1167350	+	162	125624028	-	llmg_1198	-	hypothetical protein
1147	 36.47	0	1167469..1168296	+	275	125624029	-	llmg_1200	-	hypothetical protein
1148	 38.22	0	1168384..1168731	+	115	125624030	-	llmg_1201	-	hypothetical protein
1149	 37.18	0	1168869..1170686	+	605	125624031	-	llmg_1202	-	ABC transporter ABC binding and permease protein
1150	 33.84	0	1170670..1172454	+	594	125624032	-	llmg_1203	-	ABC transporter ABC binding and permease protein
1151	 34.52	0	1172575..1173333	+	252	125624033	hdiR	llmg_1204	-	HTH-type transcriptional regulator HdiR
1152	 30.16	-1	1173347..1173535	+	62	125624034	-	llmg_1205	-	hypothetical protein
1153	 40.50	+1	1175758..1176273	+	171	125624035	rplJ	llmg_1207	-	50S ribosomal protein L10
1154	 40.71	+1	1176343..1176708	+	121	125624036	rplL	llmg_1208	-	50S ribosomal protein L7/L12
1155	 37.50	0	1177158..1177541	+	127	125624037	rmaX	llmg_1209	-	MarR family transcriptional regulator
1156	 40.26	+1	1177542..1179101	+	519	125624038	-	llmg_1210	-	multidrug resistance protein
1157	 36.20	0	1179098..1179934	+	278	125624039	-	llmg_1211	-	hypothetical protein
1158	 29.05	-1	1181520..1181846	+	108	125624040	-	llmg_1214	-	hypothetical protein
1159	 31.32	-1	1181861..1183993	+	710	125624041	-	llmg_1215	-	hypothetical protein
1160	 37.98	0	1184278..1185030	+	250	125624042	thiM	llmg_1216	-	hydroxyethylthiazole kinase
1161	 36.95	0	1185043..1185843	+	266	125624043	thiD1	llmg_1217	-	phosphomethylpyrimidine kinase
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.