IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1028	 32.18	-1	1037518..1037865	-	115	125623910	-	llmg_1079	-	hypothetical protein
1029	 37.06	0	1038050..1038478	+	142	125623911	uspA2	llmg_1080	-	universal stress protein A2
1030	 33.62	0	1038629..1038982	+	117	125623912	-	llmg_1081	-	putative secreted protein
1031	 33.86	0	1039099..1039854	-	251	125623913	-	llmg_1082	-	hypothetical protein
1032	 34.59	0	1040025..1040579	-	184	125623914	-	llmg_1083	-	hypothetical protein
1033	 27.72	-2	1040836..1041405	+	189	125623915	-	llmg_1084	-	hypothetical protein
1034	 34.57	0	1041625..1042350	+	241	125623916	-	llmg_1085	-	hypothetical protein
1035	 39.07	0	1042609..1045242	+	877	125623917	-	llmg_1086	-	cation (calcium) transporting ATPase
1036	 36.51	0	1045285..1045914	-	209	125623918	acmC	llmg_1087	-	N-acetylglucosaminidase
1037	 33.33	0	1046138..1046611	+	157	125623919	gpo	llmg_1088	-	gluthatione peroxidase
1038	 40.00	+1	1046961..1050155	+	1064	125623920	carB	llmg_1089	-	carbamoyl phosphate synthase large subunit
1039	 35.57	0	1050354..1050935	+	193	125623921	-	llmg_1090	-	hypothetical protein
1040	 38.81	0	1051013..1051231	+	72	125623922	-	llmg_1091	-	putative secreted protein
1041	 38.25	0	1051383..1052867	+	494	125623923	-	llmg_1092	-	hypothetical protein
1042	 31.24	-1	1052879..1053883	+	334	125623924	-	llmg_1093	-	putative secreted protein
1043	 35.14	0	1053915..1054247	+	110	125623925	-	llmg_1094	-	hypothetical protein
1044	 43.95	+2	1054301..1055044	+	247	125623926	-	llmg_1095	-	hypothetical protein
1045	 33.33	0	1055122..1056285	+	387	125623927	-	llmg_1096	-	hypothetical protein
1046	 42.94	+1	1056343..1057071	-	242	125623928	glpF2	llmg_1097	-	glycerol uptake facilitator
1047	 40.05	+1	1057090..1058667	-	525	125623929	glpD	llmg_1098	-	GlpD protein
1048	 41.57	+1	1058720..1060237	-	505	125623930	glpK	llmg_1099	-	glycerol kinase
1049	 36.70	0	1060537..1061070	+	177	125623931	rluC	llmg_1100	-	ribosomal large subunit pseudouridine synthase
1050	 39.19	0	1061106..1061891	-	261	125623932	-	llmg_1101	-	putative secreted protein
1051	 38.11	0	1061888..1063039	-	383	125623933	-	llmg_1102	-	hypothetical protein
1052	 39.93	+1	1063253..1064464	-	403	125623934	-	llmg_1103	-	hypothetical protein
1053	 37.58	0	1064841..1066205	+	454	125623935	-	llmg_1104	-	drug-export protein
1054	 40.68	+1	1066455..1067243	+	262	125623936	pyrK	llmg_1105	-	dihydroorotate dehydrogenase, electron transfer subunit
1055	 41.77	+1	1067401..1068336	+	311	125623937	pyrDB	llmg_1106	-	dihydroorotate dehydrogenase 1B
1056	 39.64	+1	1068466..1069179	+	237	125623938	pyrF	llmg_1107	-	orotidine 5'-phosphate decarboxylase
1057	 33.77	0	1069181..1069639	+	152	125623939	-	llmg_1108	-	hypothetical protein
1058	 36.12	0	1069648..1070364	-	238	125623940	gidB	llmg_1109	-	glucose-inhibited division protein B
1059	 37.19	0	1070361..1071320	-	319	125623941	ispB	llmg_1110	-	heptaprenyl diphosphate synthase component II
1060	 37.66	0	1071311..1071841	-	176	125623942	gerCA	llmg_1111	-	heptaprenyl diphosphate synthase component I
1061	 35.29	0	1071838..1072245	-	135	125623943	-	llmg_1112	-	hypothetical protein
1062	 35.03	0	1072316..1073257	-	313	125623944	galU	llmg_1113	-	UDP--glucose-1-phosphate uridylyltransferase
1063	 39.46	0	1073311..1074339	-	342	125623945	gpsA	llmg_1114	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1064	 30.14	-1	1074531..1075157	+	208	125623946	-	llmg_1115	-	XpaC-like protein
1065	 34.44	0	1075298..1076476	+	392	125623947	telA1	llmg_1116	-	toxic anion resistance protein
1066	 42.56	+1	1076647..1077795	+	382	125623948	nagA	llmg_1117	-	NagA protein
1067	 43.30	+2	1078182..1079204	+	340	125623949	pfk	llmg_1118	-	6-phosphofructokinase
1068	 40.69	+1	1079292..1080800	+	502	125623950	pyk	llmg_1119	-	pyruvate kinase
1069	 41.10	+1	1080918..1081895	+	325	125623951	ldh	llmg_1120	-	L-lactate dehydrogenase
1070	 42.35	+1	1082012..1082965	-	317	125623952	nupC	llmg_1121	-	purine/cytidine ABC transporter permease protein
1071	 39.36	0	1082962..1084056	-	364	125623953	nupB	llmg_1122	-	purine/cytidine ABC transporter permease protein
1072	 40.83	+1	1084049..1085569	-	506	125623954	nupA	llmg_1123	-	purine/cytidine ABC transporter ATP-binding protein
1073	 34.80	0	1085751..1086566	-	271	125623955	-	llmg_1124	-	hypothetical protein
1074	 35.86	0	1086608..1088230	-	540	125623956	fbpA	llmg_1125	-	putative fibronectin-binding protein-like protein A
1075	 34.01	0	1088535..1088978	+	147	125623957	-	llmg_1126	-	hypothetical protein
1076	 45.65	+2	1089321..1093370	+	1349	125623958	-	llmg_1127	-	cell wall surface anchor family protein
1077	 43.90	+2	1093388..1093633	+	81	125623959	-	llmg_1128	-	hypothetical protein
1078	 41.67	+1	1093651..1094226	+	191	125623960	-	llmg_1129	-	cell wall surface anchor family protein
1079	 28.27	-2	1094974..1095348	+	124	125623961	-	llmg_1130	-	hypothetical protein
1080	 35.04	0	1095546..1096484	+	312	125623962	panE	llmg_1131	-	2-dehydropantoate 2-reductase
1081	 33.16	0	1096630..1097802	+	390	125623963	sbcD	llmg_1132	-	nuclease SbcCD subunit D
1082	 31.90	-1	1097805..1100945	+	1046	125623964	sbcC	llmg_1133	-	nuclease sbcCD subunit C
1083	 30.74	-1	1101195..1101425	+	76	125623965	-	llmg_1134	-	hypothetical protein
1084	 34.54	0	1101504..1101917	-	137	125623966	-	llmg_1135	-	hypothetical protein
1085	 31.65	-1	1102206..1102919	+	237	125623967	mtsB	llmg_1136	-	manganese ABC transporter ATP binding protein
1086	 32.14	-1	1102926..1103765	+	279	125623968	mtsC	llmg_1137	-	manganese transport system membrane protein
1087	 33.33	0	1103765..1104712	+	315	125623969	mtsA	llmg_1138	-	manganese ABC transporter substrate binding protein
1088	 33.79	0	1105019..1105885	+	288	125623970	-	llmg_1139	-	hypothetical protein
1089	 36.83	0	1105938..1107194	+	418	125623971	-	llmg_1140	-	hypothetical protein
1090	 28.70	-2	1107609..1107932	+	107	125623972	-	llmg_1141	-	putative transcriptional regulator
1091	 39.12	0	1108260..1109435	-	391	125623973	tnp905	llmg_1142	-	transposase for insertion sequence element IS905F
1092	 32.36	-1	1109730..1110245	+	171	125623974	-	llmg_1143	-	hypothetical protein
1093	 36.19	0	1110256..1111095	-	279	125623975	tnp981	llmg_1144	-	transposase for insertion sequence element IS981I
1094	 36.78	0	1111107..1111367	-	86	125623976	-	llmg_1145	-	hypothetical protein
1095	 27.64	-2	1111431..1111781	+	116	125623977	-	llmg_1146	-	hypothetical protein
1096	 32.10	-1	1113008..1113331	+	107	125623978	-	llmg_1147	-	putative transcription regulator
1097	 36.38	0	1113561..1115264	+	567	125623979	-	llmg_1148	-	hypothetical protein
1098	 36.26	0	1115457..1116413	+	318	125623980	ocd	llmg_1149	-	ornithine cyclodeaminase, mu-crystallin-like protein
1099	 36.02	0	1116424..1117206	+	260	125623981	-	llmg_1150	-	hypothetical protein
1100	 33.19	0	1117267..1118679	-	470	125623982	-	llmg_1151	-	hypothetical protein
1101	 32.91	0	1119320..1120990	+	556	125623983	-	llmg_1152	-	hypothetical protein
1102	 36.08	0	1121415..1121996	+	193	125623984	pabA	llmg_1153	-	p-aminobenzoate synthetase, component II
1103	 33.81	0	1122001..1123887	+	628	125623985	pabB	llmg_1154	-	para-aminobenzoate synthase component I
1104	 33.06	0	1124076..1124447	+	123	125623986	-	llmg_1155	-	Spx-like protein
1105	 34.86	0	1124506..1124832	+	108	125623987	-	llmg_1156	-	hypothetical protein
1106	 31.52	-1	1124929..1125093	-	54	125623988	-	llmg_1158	-	hypothetical protein
1107	 32.51	0	1125090..1125452	-	120	125623989	-	llmg_1159	-	hypothetical protein
1108	 30.86	-1	1125608..1126618	+	336	125623990	-	llmg_1160	-	hypothetical protein
1109	 35.65	0	1126850..1127323	+	157	125623991	-	llmg_1161	-	sialic acid-specific 9-O-acetylesterase
1110	 37.75	0	1127360..1128718	+	452	125623992	-	llmg_1162	-	sialic acid-specific 9-O-acetylesterase
1111	 38.91	0	1128720..1130027	+	435	125623993	-	llmg_1163	-	sugar ABC transporter substrate-binding protein
1112	 37.29	0	1130161..1131120	+	319	125623994	-	llmg_1164	-	hypothetical protein
1113	 38.83	0	1131120..1131974	+	284	125623995	-	llmg_1165	-	hypothetical protein
1114	 37.01	0	1131976..1132872	+	298	125623996	-	llmg_1166	-	putative endoglucanase
1115	 28.79	-1	1132978..1133109	+	43	125623997	-	llmg_1167	-	putative endoglucanase
1116	 38.12	0	1133124..1133750	+	208	125623998	-	llmg_1168	-	putative polysaccharide deacetylase
1117	 39.25	0	1133781..1135775	+	664	125623999	aguA	llmg_1169	-	AguA protein
1118	 31.42	-1	1135978..1137705	+	575	125624000	-	llmg_1170	-	hypothetical protein
1119	 35.21	0	1137774..1139159	-	461	125624001	-	llmg_1171	-	hypothetical protein
1120	 31.23	-1	1139152..1139913	-	253	125624002	rdrB	llmg_1172	-	transcription regulator
1121	 35.71	0	1140260..1141309	+	349	125624003	-	llmg_1173	-	hypothetical protein
1122	 29.12	-1	1141470..1142015	+	181	125624004	-	llmg_1174	-	hypothetical protein
1123	 38.40	0	1142245..1143093	+	282	125624005	rbgA	llmg_1175	-	ribosomal biogenesis GTPase
1124	 37.08	0	1143206..1143979	+	257	125624006	rnhB	llmg_1176	-	ribonuclease HII
1125	 29.24	-1	1144571..1145401	+	276	125624007	gadR	llmg_1177	-	positive regulator GadR
1126	 35.31	0	1145542..1147056	+	504	125624008	gadC	llmg_1178	-	putative glutamate/gamma-aminobutyrate antiporter
1127	 35.40	0	1147076..1148476	+	466	125624009	gadB	llmg_1179	-	glutamate decarboxylase
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.