IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
974	 35.17	0	987245..987679	+	144	125623856	rmeB	llmg_1020	-	MerR family transcriptional regulator
975	 36.04	0	987722..988609	-	295	125623857	-	llmg_1021	-	hypothetical protein
976	 36.18	0	990101..990487	-	128	125623858	fur	llmg_1023	-	ferric uptake regulation protein
977	 38.55	0	990614..991303	+	229	125623859	-	llmg_1024	-	hypothetical protein
978	 35.24	0	991303..991983	+	226	125623860	-	llmg_1025	-	hypothetical protein
979	 32.26	-1	992059..992802	+	247	125623861	-	llmg_1026	-	putative methyltransferase
980	 32.38	0	992912..993331	+	139	125623862	rmaC	llmg_1027	-	MarR family transcriptional regulator
981	 34.27	0	993343..993981	+	212	125623863	-	llmg_1028	-	putative NAD(P)H nitroreductase
982	 33.33	0	993996..994355	+	119	125623864	-	llmg_1029	-	hypothetical protein
983	 37.13	0	994809..996179	+	456	125623865	trpE	llmg_1030	-	anthranilate synthase component I
984	 40.21	+1	996231..996812	+	193	125623866	trpG	llmg_1031	-	anthranilate synthase component II
985	 43.75	+2	996817..997824	+	335	125623867	trpD	llmg_1032	-	anthranilate phosphoribosyltransferase
986	 34.27	0	998610..998930	+	106	125623868	-	llmg_1034	-	hypothetical protein
987	 35.00	0	998956..999135	+	59	125623869	-	llmg_1035	-	hypothetical protein
988	 39.30	0	999434..999802	+	122	125623870	-	llmg_1037	-	putative lyase
989	 33.08	0	999809..1000603	+	264	125623871	trpC	llmg_1038	-	indole-3-glycerol-phosphate synthase
990	 35.88	0	1000593..1001651	+	352	125623872	trpF	llmg_1039	-	N-(5'-phosphoribosyl)-anthranilate isomerase
991	 36.82	0	1001641..1002213	+	190	125623873	-	llmg_1040	-	acetyltransferase
992	 41.87	+1	1002258..1003463	+	401	125623874	trpB	llmg_1041	-	tryptophan synthase subunit beta
993	 34.51	0	1003463..1004224	+	253	125623875	trpA	llmg_1042	-	tryptophan synthase subunit alpha
994	 37.99	0	1006599..1008509	+	636	125623876	bglP	llmg_1045	-	PTS system, beta-glucosides specific enzyme IIABC
995	 35.77	0	1008557..1009993	+	478	125623877	bglH	llmg_1046	-	beta-glucosidase
996	 36.88	0	1010159..1010779	+	206	125623878	busR	llmg_1047	-	transcriptional repressor BusR
997	 36.93	0	1010991..1012214	+	407	125623879	busAA	llmg_1048	-	glycine betaine/proline ABC transporter
998	 36.82	0	1012207..1013928	+	573	125623880	busAB	llmg_1049	-	glycine betaine-binding periplasmic protein precursor
999	 36.26	0	1014118..1014288	+	56	125623881	-	llmg_1050	-	hypothetical protein
1000	 35.76	0	1014345..1014920	-	191	125623882	-	llmg_1051	-	transcription regulator
1001	 36.78	0	1015186..1016259	+	357	125623883	-	llmg_1052	-	hypothetical protein
1002	 32.85	0	1016260..1016466	+	68	125623884	-	llmg_1053	-	hypothetical protein
1003	 38.86	0	1016490..1017032	+	180	125623885	-	llmg_1054	-	hypothetical protein
1004	 27.06	-2	1017062..1017364	+	100	125623886	-	llmg_1055	-	transcriptional regulator
1005	 35.13	0	1017646..1018590	+	314	125623887	-	llmg_1056	-	cation transporter
1006	 28.94	-1	1018644..1019075	+	143	125623888	-	llmg_1057	-	phosphate-starvation-inducible protein PsiE
1007	 33.66	0	1019146..1020066	-	306	125623889	coaA	llmg_1058	-	pantothenate kinase
1008	 35.34	0	1020255..1020851	+	198	125623890	rsmC	llmg_1059	-	ribosomal RNA small subunit methyltransferase C
1009	 39.83	+1	1020886..1022178	+	430	125623891	pdp	llmg_1060	-	pyrimidine-nucleoside phosphorylase
1010	 31.22	-1	1022180..1022368	+	62	125623892	-	llmg_1061	-	hypothetical protein
1011	 38.31	0	1022381..1023043	+	220	125623893	deoC	llmg_1062	-	DeoC protein
1012	 39.69	+1	1023030..1023422	+	130	125623894	cdd	llmg_1063	-	Cdd protein
1013	 39.02	0	1023690..1024745	+	351	125623895	bmpA	llmg_1064	-	basic membrane protein A
1014	 37.15	0	1024931..1025638	+	235	125623896	rgrB	llmg_1065	-	GntR family transcriptional regulator
1015	 37.19	0	1025646..1026086	-	146	125623897	-	llmg_1066	-	hypothetical protein
1016	 34.36	0	1026184..1027737	-	517	125623898	kinB	llmg_1067	-	sensor protein kinase kinB
1017	 33.61	0	1027727..1028437	-	236	125623899	llrB	llmg_1068	-	two-component system regulator llrB
1018	 33.04	0	1028621..1028956	+	111	125623900	-	llmg_1069	-	hypothetical protein
1019	 35.22	0	1029743..1030273	+	176	125623901	-	llmg_1070	-	putative secreted protein
1020	 33.33	0	1030384..1030953	+	189	125623902	-	llmg_1071	-	hypothetical protein
1021	 37.80	0	1031842..1032132	+	96	125623903	-	llmg_1072	-	hypothetical protein
1022	 40.31	+1	1032228..1032944	+	238	125623904	-	llmg_1073	-	transposase for insertion sequence element IS904E (fragment)
1023	 35.84	0	1032985..1033743	-	252	125623905	-	llmg_1074	-	putative transposase helper protein for IS712E
1024	 39.87	+1	1033755..1034978	-	407	125623906	tnp712	llmg_1075	-	transposase for insertion sequence element IS712E
1025	 35.87	0	1035285..1035836	-	183	125623907	-	llmg_1076	-	putative acetyltransferase
1026	 34.99	0	1036203..1036625	+	140	125623908	-	llmg_1077	-	putative glyoxalase family protein
1027	 33.52	0	1036771..1037319	+	182	125623909	-	llmg_1078	-	hypothetical protein
1028	 32.18	-1	1037518..1037865	-	115	125623910	-	llmg_1079	-	hypothetical protein
1029	 37.06	0	1038050..1038478	+	142	125623911	uspA2	llmg_1080	-	universal stress protein A2
1030	 33.62	0	1038629..1038982	+	117	125623912	-	llmg_1081	-	putative secreted protein
1031	 33.86	0	1039099..1039854	-	251	125623913	-	llmg_1082	-	hypothetical protein
1032	 34.59	0	1040025..1040579	-	184	125623914	-	llmg_1083	-	hypothetical protein
1033	 27.72	-2	1040836..1041405	+	189	125623915	-	llmg_1084	-	hypothetical protein
1034	 34.57	0	1041625..1042350	+	241	125623916	-	llmg_1085	-	hypothetical protein
1035	 39.07	0	1042609..1045242	+	877	125623917	-	llmg_1086	-	cation (calcium) transporting ATPase
1036	 36.51	0	1045285..1045914	-	209	125623918	acmC	llmg_1087	-	N-acetylglucosaminidase
1037	 33.33	0	1046138..1046611	+	157	125623919	gpo	llmg_1088	-	gluthatione peroxidase
1038	 40.00	+1	1046961..1050155	+	1064	125623920	carB	llmg_1089	-	carbamoyl phosphate synthase large subunit
1039	 35.57	0	1050354..1050935	+	193	125623921	-	llmg_1090	-	hypothetical protein
1040	 38.81	0	1051013..1051231	+	72	125623922	-	llmg_1091	-	putative secreted protein
1041	 38.25	0	1051383..1052867	+	494	125623923	-	llmg_1092	-	hypothetical protein
1042	 31.24	-1	1052879..1053883	+	334	125623924	-	llmg_1093	-	putative secreted protein
1043	 35.14	0	1053915..1054247	+	110	125623925	-	llmg_1094	-	hypothetical protein
1044	 43.95	+2	1054301..1055044	+	247	125623926	-	llmg_1095	-	hypothetical protein
1045	 33.33	0	1055122..1056285	+	387	125623927	-	llmg_1096	-	hypothetical protein
1046	 42.94	+1	1056343..1057071	-	242	125623928	glpF2	llmg_1097	-	glycerol uptake facilitator
1047	 40.05	+1	1057090..1058667	-	525	125623929	glpD	llmg_1098	-	GlpD protein
1048	 41.57	+1	1058720..1060237	-	505	125623930	glpK	llmg_1099	-	glycerol kinase
1049	 36.70	0	1060537..1061070	+	177	125623931	rluC	llmg_1100	-	ribosomal large subunit pseudouridine synthase
1050	 39.19	0	1061106..1061891	-	261	125623932	-	llmg_1101	-	putative secreted protein
1051	 38.11	0	1061888..1063039	-	383	125623933	-	llmg_1102	-	hypothetical protein
1052	 39.93	+1	1063253..1064464	-	403	125623934	-	llmg_1103	-	hypothetical protein
1053	 37.58	0	1064841..1066205	+	454	125623935	-	llmg_1104	-	drug-export protein
1054	 40.68	+1	1066455..1067243	+	262	125623936	pyrK	llmg_1105	-	dihydroorotate dehydrogenase, electron transfer subunit
1055	 41.77	+1	1067401..1068336	+	311	125623937	pyrDB	llmg_1106	-	dihydroorotate dehydrogenase 1B
1056	 39.64	+1	1068466..1069179	+	237	125623938	pyrF	llmg_1107	-	orotidine 5'-phosphate decarboxylase
1057	 33.77	0	1069181..1069639	+	152	125623939	-	llmg_1108	-	hypothetical protein
1058	 36.12	0	1069648..1070364	-	238	125623940	gidB	llmg_1109	-	glucose-inhibited division protein B
1059	 37.19	0	1070361..1071320	-	319	125623941	ispB	llmg_1110	-	heptaprenyl diphosphate synthase component II
1060	 37.66	0	1071311..1071841	-	176	125623942	gerCA	llmg_1111	-	heptaprenyl diphosphate synthase component I
1061	 35.29	0	1071838..1072245	-	135	125623943	-	llmg_1112	-	hypothetical protein
1062	 35.03	0	1072316..1073257	-	313	125623944	galU	llmg_1113	-	UDP--glucose-1-phosphate uridylyltransferase
1063	 39.46	0	1073311..1074339	-	342	125623945	gpsA	llmg_1114	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1064	 30.14	-1	1074531..1075157	+	208	125623946	-	llmg_1115	-	XpaC-like protein
1065	 34.44	0	1075298..1076476	+	392	125623947	telA1	llmg_1116	-	toxic anion resistance protein
1066	 42.56	+1	1076647..1077795	+	382	125623948	nagA	llmg_1117	-	NagA protein
1067	 43.30	+2	1078182..1079204	+	340	125623949	pfk	llmg_1118	-	6-phosphofructokinase
1068	 40.69	+1	1079292..1080800	+	502	125623950	pyk	llmg_1119	-	pyruvate kinase
1069	 41.10	+1	1080918..1081895	+	325	125623951	ldh	llmg_1120	-	L-lactate dehydrogenase
1070	 42.35	+1	1082012..1082965	-	317	125623952	nupC	llmg_1121	-	purine/cytidine ABC transporter permease protein
1071	 39.36	0	1082962..1084056	-	364	125623953	nupB	llmg_1122	-	purine/cytidine ABC transporter permease protein
1072	 40.83	+1	1084049..1085569	-	506	125623954	nupA	llmg_1123	-	purine/cytidine ABC transporter ATP-binding protein
1073	 34.80	0	1085751..1086566	-	271	125623955	-	llmg_1124	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.