IslandPathversion 1.0

IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.48 STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
891	 37.32	0	1114982..1115257	+	91	94987336	himD	LI0894	-	nucleoid DNA-binding protein
892	 34.63	0	1115585..1116430	+	281	94987337	dapF	LI0895	-	diaminopimelate epimerase
893	 34.44	0	1116477..1117382	+	301	94987338	dapA	LI0896	-	dihydrodipicolinate synthase
894	 33.42	0	1117584..1118747	+	387	94987339	araJ	LI0897	-	protein AraJ
895	 34.23	0	1118929..1119711	+	260	94987340	tatD	LI0898	-	Mg-dependent DNase
896	 31.62	0	1119740..1120381	-	213	94987341	-	LI0899	-	hypothetical protein
897	 29.35	-1	1120638..1121039	+	133	94987342	-	LI0900	-	metal-dependent hydrolase
898	 33.02	0	1121253..1121570	+	105	94987343	dsr	LI0901	-	sulfite reductase, dissimilatory-type gamma subunit
899	 34.41	0	1121916..1122938	+	340	94987344	-	LI0902	-	outer membrane protein
900	 28.66	-1	1122971..1123441	+	156	94987345	-	LI0903	-	hypothetical protein
901	 36.96	0	1123545..1127711	-	1388	94987346	rpoB	LI0904	-	DNA-directed RNA polymerase, beta subunit/140 kD subunit
902	 37.72	+1	1127787..1131908	-	1373	94987347	rpoB	LI0905	-	DNA-directed RNA polymerase subunit beta
903	 35.42	0	1132246..1133538	-	430	94987348	hemL	LI0906	-	glutamate-1-semialdehyde aminotransferase
904	 34.93	0	1133538..1134038	-	166	94987349	nirH	LI0907	-	transcriptional regulators
905	 36.08	0	1134626..1135717	+	363	94987350	hypD	LI0908	-	hydrogenase maturation factor
906	 34.49	0	1136500..1137279	-	259	94987351	lgt	LI0909	-	prolipoprotein diacylglyceryltransferase
907	 33.19	0	1137481..1138158	-	225	94987352	cmk	LI0910	-	cytidylate kinase
908	 32.44	0	1138388..1139284	-	298	94987353	-	LI0911	-	hypothetical protein
909	 38.28	+1	1139678..1141579	+	633	94987354	dnaK	LI0912	-	molecular chaperone dnaK
910	 34.11	0	1141712..1143127	-	471	94987355	aspA	LI0913	-	aspartate ammonia-lyase
911	 33.67	0	1143320..1144207	-	295	94987356	dacC	LI0914	-	D-alanyl-D-alanine carboxypeptidase
912	 34.31	0	1144573..1145496	+	307	94987357	livE	LI0915	-	branched-chain amino acid aminotransferase
913	 32.23	0	1145527..1147251	+	574	94987358	dnaX	LI0916	-	DNA polymerase III, gamma/tau subunits
914	 33.65	0	1147270..1147581	+	103	94987359	-	LI0917	-	hypothetical protein
915	 35.62	0	1147646..1148257	+	203	94987360	recR	LI0918	-	recombinational DNA repair protein
916	 30.46	-1	1148418..1149008	-	196	94987361	-	LI0919	-	helicase family protein
917	 35.44	0	1149173..1150072	-	299	94987362	-	LI0920	-	membrane proteins related to metalloendopeptidases
918	 35.90	0	1150886..1152172	+	428	94987363	purD	LI0921	-	phosphoribosylamine--glycine ligase
919	 37.21	0	1152159..1152674	+	171	94987364	purK	LI0922	-	phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
920	 32.23	0	1152735..1153367	+	210	94987365	lepB	LI0923	-	Signal peptidase I
921	 35.20	0	1153381..1153701	-	106	94987366	qacE	LI0924	-	membrane transporters of cations and cationic drugs
922	 34.66	0	1153732..1154109	-	125	94987367	qacE	LI0925	-	membrane transporters of cations and cationic drugs
923	 33.28	0	1154151..1156142	-	663	94987368	mdoB	LI0926	-	hypothetical protein
924	 32.94	0	1156205..1157719	-	504	94987369	mviN	LI0927	-	uncharacterized membrane protein, putative virulence factor
925	 35.75	0	1157845..1158960	+	371	94987370	tgt	LI0928	-	queuine/archaeosine tRNA-ribosyltransferase
926	 30.98	-1	1159064..1160209	-	381	94987371	-	LI0929	-	cell wall biosynthesis glycosyltransferase
927	 36.95	0	1160320..1160706	-	128	94987372	rplL	LI0930	-	50S ribosomal protein L7/L12
928	 37.19	0	1160754..1161272	-	172	94987373	rplJ	LI0931	-	50S ribosomal protein L10
929	 37.29	0	1161433..1162140	-	235	94987374	rplA	LI0932	-	50S ribosomal protein L1
930	 34.28	0	1162245..1162667	-	140	94987375	rplK	LI0933	-	50S ribosomal protein L11
931	 39.66	+1	1162747..1163331	-	194	94987376	nusG	LI0934	-	transcription antiterminator
932	 39.70	+1	1163863..1165056	-	397	94987377	tufA	LI0935	-	elongation factor Tu
933	 33.59	0	1165638..1168367	-	909	94987378	pqqL	LI0936	-	Zn-dependent peptidase
934	 38.18	+1	1168519..1169796	+	425	94987379	thiC	LI0937	-	thiamine biosynthesis protein ThiC
935	 34.69	0	1169954..1171351	-	465	94987380	purF	LI0938	-	glutamine phosphoribosylpyrophosphate amidotransferase
936	 36.30	0	1171427..1174657	-	1076	94987381	carB	LI0939	-	carbamoylphosphate synthase large subunit (split gene in MJ)
937	 34.99	0	1174801..1175283	+	160	94987382	yqiE	LI0940	-	ADP-ribose pyrophosphatase
938	 35.21	0	1175531..1176382	+	283	94987383	corC	LI0941	-	Mg2+/Co2+ transporter
939	 43.55	+2	1176552..1176923	+	123	94987384	rpsL	LI0942	-	30S ribosomal protein S12
940	 40.34	+1	1177061..1177531	+	156	94987385	rpsG	LI0943	-	30S ribosomal protein S7
941	 38.92	+1	1177547..1179622	+	691	94987386	fusA	LI0944	-	elongation factor G
942	 31.87	0	1179650..1180744	-	364	94987387	-	LI0945	-	dienelactone hydrolase
943	 36.17	0	1181886..1183754	+	622	94987388	gidA	LI0946	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
944	 32.18	0	1184004..1184525	+	173	94987389	-	LI0947	-	cell wall-associated hydrolases (invasion-associated proteins)
945	 36.26	0	1184566..1185660	-	364	94987390	-	LI0948	-	glycosyltransferase
946	 33.94	0	1185825..1186151	-	108	94987391	-	LI0949	-	hypothetical protein
947	 31.23	-1	1186164..1187114	-	316	94987392	-	LI0950	-	branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
948	 34.20	0	1187315..1188358	-	347	94987393	asd	LI0951	-	aspartate-semialdehyde dehydrogenase
949	 29.40	-1	1189061..1189645	-	194	94987394	-	LI0952	-	hypothetical protein
950	 36.40	0	1189772..1190455	-	227	94987395	ccmC	LI0953	-	ABC-type transport system involved in cytochrome c biogenesis, permease component
951	 34.07	0	1190503..1191180	-	225	94987396	-	LI0954	-	ABC-type transport system involved in cytochrome c biogenesis, permease component
952	 32.39	0	1191225..1191860	-	211	94987397	ccmA/ccmB	LI0955	-	ABC-type multidrug transport system, ATPase component
953	 33.93	0	1191823..1193829	-	668	94987398	ccmF	LI0956	-	cytochrome c biogenesis factor
954	 30.70	-1	1193968..1194384	-	138	94987399	b2503	LI0957	-	hypothetical protein
955	 33.81	0	1194473..1195519	-	348	94987400	yhdP	LI0958	-	hemolysin-like protein
956	 37.42	0	1196267..1196584	+	105	94987401	rpsJ	LI0959	-	30S ribosomal protein S10
957	 38.39	+1	1196606..1197238	+	210	94987402	rplC	LI0960	-	50S ribosomal protein L3
958	 37.36	0	1197254..1197874	+	206	94987403	rplD	LI0961	-	50S ribosomal protein L4
959	 32.64	0	1197889..1198176	+	95	94987404	rplW	LI0962	-	50S ribosomal protein L23
960	 41.52	+2	1198179..1199009	+	276	94987405	rplB	LI0963	-	50S ribosomal protein L2
961	 35.82	0	1199018..1199299	+	93	94987406	rpsS	LI0964	-	30S ribosomal protein S19
962	 37.17	0	1199312..1199650	+	112	94987407	rplV	LI0965	-	50S ribosomal protein L22
963	 36.92	0	1199654..1200295	+	213	94987408	rpsC	LI0966	-	30S ribosomal protein S3
964	 39.37	+1	1200295..1200708	+	137	94987409	rplP	LI0967	-	50S ribosomal protein L16
965	 33.33	0	1200896..1201162	+	88	94987410	rpsQ	LI0968	-	30S ribosomal protein S17
966	 35.23	0	1201178..1201546	+	122	94987411	rplN	LI0969	-	50S ribosomal protein L14
967	 30.84	-1	1201555..1201875	+	106	94987412	rplX	LI0970	-	50S ribosomal protein L24
968	 32.96	0	1201885..1202424	+	179	94987413	rplE	LI0971	-	50S ribosomal protein L5
969	 32.81	0	1202656..1203036	+	126	94987414	rpsH	LI0972	-	30S ribosomal protein S8
970	 34.98	0	1203044..1203589	+	181	94987415	rplF	LI0973	-	50S ribosomal protein L6
971	 30.85	-1	1203602..1203964	+	120	94987416	rplR	LI0974	-	50S ribosomal protein L18
972	 41.06	+2	1203989..1204480	+	163	94987417	rpsE	LI0975	-	30S ribosomal protein S5
973	 36.89	0	1204661..1205110	+	149	94987418	rplO	LI0976	-	50S ribosomal protein L15
974	 33.56	0	1205122..1206429	+	435	94987419	secY	LI0977	-	preprotein translocase subunit SecY
975	 35.93	0	1206433..1207203	+	256	94987420	map	LI0978	-	methionine aminopeptidase
976	 37.94	+1	1207425..1207793	+	122	94987421	rpsM	LI0979	-	30S ribosomal protein S13
977	 40.51	+1	1207850..1208239	+	129	94987422	rpsK	LI0980	-	30S ribosomal protein S11
978	 37.96	+1	1208262..1208888	+	208	94987423	rpsD	LI0981	-	30S ribosomal protein S4
979	 36.11	0	1208901..1209944	+	347	94987424	rpoA	LI0982	-	DNA-directed RNA polymerase subunit alpha
980	 34.12	0	1209934..1210314	+	126	94987425	rplQ	LI0983	-	ribosomal protein L17
981	 34.96	0	1210609..1212024	+	471	94987426	xanB	LI0984	-	phosphomannose isomerase/GDP-mannose pyrophosphorylase
982	 34.41	0	1212317..1213618	+	433	94987427	vc0389	LI0985	-	putative Na+/H+ antiporter
983	 32.86	0	1213908..1215167	+	419	94987428	hisS	LI0986	-	histidyl-tRNA synthetase
984	 36.00	0	1215195..1216994	+	599	94987429	aspS	LI0987	-	aspartyl-tRNA synthetase
985	 34.74	0	1217085..1218077	+	330	94987430	dppF	LI0988	-	oligopeptide ABC transporter ATP-binding protein
986	 35.16	0	1218216..1218980	+	254	94987431	-	LI0989	-	3-deoxy-manno-octulosonate cytidylyltransferase
987	 34.39	0	1218980..1220110	+	376	94987432	carA	LI0990	-	carbamoyl phosphate synthase small subunit
988	 34.18	0	1220290..1221117	+	275	94987433	-	LI0991	-	GluNAc transferase
989	 30.61	-1	1221162..1221821	-	219	94987434	-	LI0992	-	hypothetical protein
990	 35.79	0	1222274..1223455	+	393	94987435	acrA	LI0993	-	multidrug efflux membrane permease
34.48	MEAN

3.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.