IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.48   STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
41	 37.90	+1	47683..49611	+	642	94986486	-	LI0041	-	hypothetical protein
42	 35.65	0	49861..50334	+	157	94986487	-	LI0042	-	hypothetical protein
43	 43.43	+2	50406..53108	+	900	94986488	-	LI0043	-	hypothetical protein
44	 31.66	0	53869..55779	-	636	94986489	mdoB	LI0044	-	hypothetical protein
45	 34.77	0	56748..59387	+	879	94986490	-	LI0045	-	hypothetical protein
46	 33.84	0	60142..60534	+	130	94986491	-	LI0046	-	hypothetical protein
47	 32.70	0	61583..62695	-	370	94986492	secF	LI0047	-	preprotein translocase subunit SecF
48	 34.91	0	62698..64281	-	527	94986493	secD	LI0048	-	preprotein translocase subunit SecD
49	 33.04	0	64432..64770	-	112	94986494	yajC	LI0049	-	preprotein translocase subunit YajC
50	 30.82	-1	65816..69043	-	1075	94986495	-	LI0050	-	uncharacterized protein involved in outer membrane biogenesis
51	 31.46	0	69095..72304	-	1069	94986496	uvrD	LI0051	-	ATP-dependent exoDNAse beta subunit
52	 36.11	0	72270..73637	-	455	94986497	pfp	LI0052	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
53	 28.23	-2	74229..74561	+	110	94986498	-	LI0053	-	hypothetical protein
54	 32.53	0	74909..75781	-	290	94986499	-	LI0054	-	rRNA methylases
55	 33.39	0	75939..77606	+	555	94986500	mltD	LI0055	-	membrane-bound lytic murein transglycosylase D (MltD)
56	 35.05	0	77677..78435	-	252	94986501	-	LI0056	-	nitrate ABC transporter, permease protein (nrtB-1)
57	 32.40	0	78432..79178	-	248	94986502	-	LI0057	-	nitrate ABC transporter, ATP-binding protein (nrtC-1)
58	 35.53	0	79175..80086	-	303	94986503	-	LI0058	-	thiamine biosynthesis protein, putative
59	 34.90	0	80428..80937	+	169	94986504	-	LI0059	-	hypothetical protein
60	 37.48	0	81700..82470	+	256	94986505	glpR	LI0060	-	transcriptional regulators of sugar metabolism
61	 30.22	-1	82557..82877	-	106	94986506	-	LI0061	-	hypothetical protein
62	 31.17	-1	83393..84085	-	230	94986507	ybeN	LI0062	-	nicotinic acid mononucleotide adenylyltransferase
63	 30.10	-1	84629..85216	+	195	94986508	-	LI0063	-	hypothetical protein
64	 36.09	0	85844..86242	+	132	94986509	-	LI0064	-	transcriptional regulator
65	 26.80	-2	86420..87169	-	249	94986510	-	LI0065	-	Outer membrane lipoprotein-sorting protein
66	 35.31	0	87173..89860	-	895	94986511	ftsK	LI0066	-	DNA segregation ATPase FtsK/SpoIIIE and related proteins
67	 34.41	0	89937..90494	-	185	94986512	-	LI0067	-	translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)
68	 32.68	0	90801..91409	+	202	94986513	-	LI0068	-	GTPase EngB
69	 40.91	+2	92957..93616	+	219	94986514	-	LI0069	-	hypothetical protein
70	 34.98	0	93731..94156	+	141	94986515	-	LI0070	-	hypothetical protein
71	 39.16	+1	94285..94833	+	182	94986516	-	LI0071	-	hypothetical protein
72	 38.78	+1	94921..95379	+	152	94986517	-	LI0072	-	hypothetical protein
73	 36.90	0	95597..96073	+	158	94986518	-	LI0073	-	hypothetical protein
74	 28.61	-1	97539..97961	-	140	94986519	-	LI0074	-	rhodanese-related sulfurtransferase
75	 32.59	0	98193..98996	+	267	94986520	icc	LI0075	-	phosphodiesterase
76	 34.29	0	99014..100063	+	349	94986521	-	LI0076	-	sugar ABC transporter, ATP-binding protein
77	 34.72	0	100196..101491	+	431	94986522	ugpB	LI0077	-	extracellular solute-binding protein
78	 30.86	-1	101554..102441	+	295	94986523	ugpA	LI0078	-	inner membrane component of binding-protein-dependent transport system
79	 31.66	0	102438..103274	+	278	94986524	-	LI0079	-	inner membrane component of binding-protein-dependent transport system
80	 31.11	-1	103384..104913	-	509	94986525	-	LI0080	-	hypothetical protein
81	 34.50	0	105205..106146	+	313	94986526	-	LI0081	-	nucleoside-diphosphate sugar epimerase
82	 34.70	0	106189..107283	-	364	94986527	-	LI0082	-	hypothetical protein
83	 37.21	0	107298..108380	-	360	94986528	kpsF	LI0083	-	CBS domain-containing protein
84	 29.37	-1	110475..111206	-	243	94986529	-	LI0084	-	hypothetical protein
85	 38.81	+1	111603..112004	-	133	94986530	dnaK	LI0085	-	molecular chaperone dnaK
86	 32.74	0	112674..113177	-	167	94986531	-	LI0086	-	putative beta-D-galactosidase
87	 36.50	0	113180..114442	-	420	94986532	argD	LI0087	-	acetylornithine aminotransferase
88	 37.06	0	114414..114896	-	160	94986533	dut	LI0088	-	dUTPase
89	 35.29	0	115144..115653	+	169	94986534	folE	LI0089	-	7-cyano-7-deazaguanine reductase
90	 33.09	0	115673..116482	+	269	94986535	-	LI0090	-	pantothenate kinase
91	 37.25	0	116596..117897	+	433	94986536	eno	LI0091	-	enolase (2-phosphoglycerate dehydratase)
92	 34.39	0	117911..118954	-	347	94986537	rfaF/rfaQ	LI0092	-	ADP-heptose:LPS heptosyltransferase
93	 33.03	0	119487..120482	+	331	94986538	-	LI0093	-	hypothetical protein
94	 34.47	0	120488..121714	+	408	94986539	pfk	LI0094	-	fructose-2,6-bisphosphatase
95	 31.46	0	121739..123019	-	426	94986540	-	LI0095	-	CheY-like receiver
96	 27.86	-2	123089..123490	-	133	94986541	-	LI0096	-	hypothetical protein
97	 32.80	0	124343..125278	-	311	94986542	corA	LI0097	-	CorA, CorA-like Mg2+ transporter protein
98	 32.73	0	125579..126076	+	165	94986543	-	LI0098	-	hypothetical protein
99	 34.65	0	126080..127141	-	353	94986544	argC	LI0099	-	N-acetyl-gamma-glutamyl-phosphate reductase
100	 30.77	-1	127145..127495	-	116	94986545	-	LI0100	-	hypothetical protein
101	 29.78	-1	127796..128161	-	121	94986546	dgkA	LI0101	-	diacylglycerol kinase
102	 36.36	0	128189..130795	-	868	94986547	polB	LI0102	-	DNA polymerase I
103	 34.51	0	131168..132442	+	424	94986548	-	LI0103	-	hypothetical protein
104	 27.73	-2	132452..133093	+	213	94986549	-	LI0104	-	hypothetical protein
105	 31.64	0	133237..134181	+	314	94986550	-	LI0105	-	hypothetical protein
106	 35.50	0	134353..136017	-	554	94986551	ilv	LI0106	-	acetolactate synthase
107	 33.87	0	136036..136965	-	309	94986552	-	LI0107	-	permease
108	 31.91	0	137267..138253	-	328	94986553	dapA	LI0108	-	dihydrodipicolinate synthase/N-acetylneuraminate lyase
109	 32.53	0	138738..139481	+	247	94986554	-	LI0109	-	hypothetical protein
110	 35.31	0	139486..140751	+	421	94986555	smf	LI0110	-	Rossmann fold nucleotide-binding protein involved in DNA uptake
111	 34.93	0	140818..141759	+	313	94986556	-	LI0111	-	site-specific recombinase XerC
112	 37.05	0	141824..142765	-	313	94986557	-	LI0112	-	hypothetical protein
113	 33.26	0	142958..144319	-	453	94986558	engA	LI0113	-	GTP-binding protein EngA
114	 35.14	0	144414..145688	-	424	94986559	serS	LI0114	-	seryl-tRNA synthetase
115	 34.54	0	145952..146530	+	192	94986560	-	LI0115	-	hypothetical protein
116	 34.54	0	146548..147627	+	359	94986561	-	LI0116	-	TPR repeat-containing protein
117	 33.93	0	147699..149210	+	503	94986562	cysG	LI0117	-	siroheme synthase
118	 34.94	0	149239..149922	+	227	94986563	purN	LI0118	-	phosphoribosylglycinamide formyltransferase
119	 33.93	0	149998..150498	-	166	94986564	msrA	LI0119	-	peptide methionine sulfoxide reductase
120	 34.31	0	150473..150880	-	135	94986565	-	LI0120	-	methionine sulfoxide reductase B
121	 32.42	0	150925..151581	-	218	94986566	pepQ	LI0121	-	Xaa-Pro aminopeptidase
122	 36.23	0	152230..152988	+	252	94986567	-	LI0122	-	cytochrome c biogenesis protein
123	 34.21	0	153127..153696	-	189	94986568	lacA	LI0123	-	maltose O-acetyltransferase
124	 37.51	0	154211..155119	+	302	94986569	cbpA	LI0124	-	DnaJ-class molecular chaperone
125	 33.65	0	155138..155449	+	103	94986570	-	LI0125	-	hypothetical protein
126	 36.52	0	155540..158173	+	877	94986571	clpB	LI0126	-	ATPases with chaperone activity, ATP-binding subunit
127	 36.36	0	158235..158993	-	252	94986572	glnQ	LI0127	-	ABC-type polar amino acid transport system, ATPase component
128	 35.50	0	158962..159747	-	261	94986573	glnP	LI0128	-	ABC-type amino acid transport system, permease component
129	 33.20	0	159798..160547	-	249	94986574	-	LI0129	-	amino acid ABC transporter, periplasmic amino acid-binding protein
130	 32.83	0	160881..161474	+	197	94986575	hisJ	LI0130	-	histidinol phosphatase and related phosphatases
131	 34.33	0	161575..162882	+	435	94986576	folC	LI0131	-	folylpolyglutamate synthase
132	 32.15	0	162904..164340	+	478	94986577	selA	LI0132	-	selenocysteine synthase
133	 31.64	0	164510..164863	+	117	94986578	-	LI0133	-	hypothetical protein
134	 31.30	-1	164954..166084	+	376	94986579	-	LI0134	-	polymerase
135	 33.57	0	166090..167793	+	567	94986580	-	LI0135	-	hypothetical protein
136	 38.73	+1	169098..169745	+	215	94986581	-	LI0136	-	hypothetical protein
137	 35.61	0	170015..170803	-	262	94986582	-	LI0137	-	putative integral membrane protein
138	 27.13	-2	171157..171543	-	128	94986583	-	LI0138	-	hypothetical protein
139	 25.67	-2	171577..172059	-	160	94986584	-	LI0139	-	hypothetical protein
140	 29.59	-1	172266..173522	-	418	94986585	-	LI0140	-	glycosyltransferase
34.48	MEAN

3.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.