IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.48   STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
826	 36.59	0	1029763..1030869	+	368	94987271	potA	LI0829	-	putrescine/spermidine ABC transporter ATPase protein
827	 32.32	0	1030856..1031740	+	294	94987272	potB	LI0830	-	ABC-type spermidine/putrescine transport system, permease component I
828	 32.95	0	1031740..1032516	+	258	94987273	potC	LI0831	-	spermidine/putrescine ABC transporter membrane protein
829	 31.53	0	1032574..1033626	+	350	94987274	potD	LI0832	-	spermidine/putrescine-binding periplasmic protein
830	 37.43	0	1033802..1035070	-	422	94987275	-	LI0833	-	hypothetical protein
831	 32.66	0	1035090..1035533	-	147	94987276	-	LI0834	-	hypothetical protein
832	 31.78	0	1035578..1036222	-	214	94987277	-	LI0835	-	hypothetical protein
833	 36.84	0	1036458..1037198	+	246	94987278	-	LI0836	-	transcriptional regulator
834	 33.55	0	1037498..1040206	+	902	94987279	-	LI0837	-	hypothetical protein
835	 37.65	+1	1040246..1041496	-	416	94987280	murA	LI0838	-	UDP-N-acetylglucosamine enolpyruvyl transferase
836	 38.08	+1	1041779..1042558	-	259	94987281	xthA	LI0839	-	exonuclease III
837	 32.52	0	1042878..1043369	-	163	94987282	-	LI0840	-	hypothetical protein
838	 32.79	0	1043947..1044681	-	244	94987283	-	LI0841	-	putative invasin
839	 35.93	0	1045546..1047813	+	755	94987284	katE	LI0842	-	hydroperoxidase II
840	 34.70	0	1048872..1050629	+	585	94987285	tsr	LI0843	-	methyl-accepting chemotaxis protein
841	 33.25	0	1050746..1052017	-	423	94987286	-	LI0844	-	tRNA and rRNA cytosine-C5-methylases
842	 34.61	0	1052160..1053803	+	547	94987287	-	LI0845	-	hypothetical protein
843	 35.20	0	1053988..1055109	+	373	94987288	-	LI0846	-	lipopolysaccharide core biosynthesis protein RfaG (glucosyltransferase I)
844	 31.32	-1	1055274..1056068	+	264	94987289	-	LI0847	-	hypothetical protein
845	 35.72	0	1056140..1057477	-	445	94987290	gidA	LI0848	-	tRNA (uracil-5-)-methyltransferase Gid
846	 31.76	0	1057662..1058297	-	211	94987291	-	LI0849	-	HD superfamily hydrolase
847	 33.42	0	1058349..1059566	-	405	94987292	-	LI0850	-	hypothetical protein
848	 37.31	0	1059742..1060068	+	108	94987293	-	LI0851	-	NAD(P)H-dependent flavin reductase
849	 33.00	0	1060120..1060419	+	99	94987294	-	LI0852	-	NAD(P)H nitroreductase
850	 29.90	-1	1060422..1060829	-	135	94987295	-	LI0853	-	redox protein, regulator of disulfide bond formation
851	 39.62	+1	1062640..1063959	-	439	94987296	fliI	LI0854	-	flagellar biosynthesis/type III secretory pathway ATPase
852	 34.51	0	1063984..1065429	-	481	94987297	-	LI0855	-	flagellar biosynthesis/type III secretory pathway protein
853	 37.05	0	1065476..1066471	-	331	94987298	fliG	LI0856	-	flagellar motor switch protein
854	 36.40	0	1066878..1068542	-	554	94987299	fliF	LI0857	-	flagellar biosynthesis/type III secretory pathway lipoprotein
855	 33.62	0	1068655..1069002	-	115	94987300	fliE	LI0858	-	flagellar hook-basal body protein
856	 38.55	+1	1069051..1069491	-	146	94987301	flgC	LI0859	-	flagellar basal body rod protein
857	 36.23	0	1069494..1069907	-	137	94987302	flgB	LI0860	-	flagellar basal body rod protein FlgB
858	 32.67	0	1070196..1070954	-	252	94987303	cbiO	LI0861	-	ABC-type cobalt transport system, ATPase component
859	 28.78	-1	1070963..1071709	-	248	94987304	-	LI0862	-	hypothetical protein
860	 33.33	0	1071699..1072334	-	211	94987305	cbiM	LI0863	-	cobalt transport protein CbiM
861	 33.33	0	1072321..1072818	-	165	94987306	-	LI0864	-	hypothetical protein
862	 34.80	0	1073007..1074569	-	520	94987307	mviN	LI0865	-	uncharacterized membrane protein, putative virulence factor
863	 33.43	0	1074655..1076736	-	693	94987308	-	LI0866	-	membrane metal-binding protein
864	 34.26	0	1077738..1078598	-	286	94987309	murI	LI0867	-	glutamate racemase
865	 32.60	0	1078883..1079695	-	270	94987310	rluB	LI0868	-	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
866	 33.50	0	1079867..1081684	+	605	94987311	-	LI0869	-	ABC-type multidrug transport system, ATPase and permease components
867	 35.81	0	1081659..1082303	+	214	94987312	-	LI0870	-	hypothetical protein
868	 34.80	0	1082307..1083191	+	294	94987313	htrB	LI0871	-	acyltransferase
869	 36.03	0	1083991..1085361	-	456	94987314	-	LI0872	-	hypothetical protein
870	 26.77	-2	1085499..1086062	-	187	94987315	-	LI0873	-	ACT domain-containing protein
871	 36.88	0	1086267..1088042	+	591	94987316	-	LI0874	-	formate--tetrahydrofolate ligase
872	 35.68	0	1088081..1088974	+	297	94987317	-	LI0875	-	methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase
873	 32.66	0	1088986..1090329	-	447	94987318	-	LI0876	-	tRNA and rRNA cytosine-C5-methylases
874	 35.15	0	1090388..1091761	-	457	94987319	atoC	LI0877	-	response regulator
875	 32.57	0	1091827..1093269	-	480	94987320	atoS	LI0878	-	Signal transduction histidine kinase
876	 35.81	0	1093271..1094605	-	444	94987321	pgi	LI0879	-	glucose-6-phosphate isomerase
877	 33.59	0	1095072..1095860	+	262	94987322	sfsA	LI0880	-	DNA-binding protein, stimulates sugar fermentation
878	 27.70	-2	1095872..1096972	-	366	94987323	-	LI0881	-	permease
879	 32.47	0	1096969..1098123	-	384	94987324	-	LI0882	-	permease
880	 35.93	0	1098346..1099038	-	230	94987325	-	LI0883	-	Zn-dependent hydrolase
881	 32.14	0	1099356..1101281	-	641	94987326	selB	LI0884	-	selenocysteine-specific translation elongation factor
882	 35.94	0	1101390..1102847	-	485	94987327	-	LI0885	-	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
883	 29.23	-1	1102873..1103156	-	93	94987328	-	LI0886	-	glutamyl-tRNA (Gln) amidotransferase subunit C
884	 33.54	0	1103384..1103869	-	161	94987329	-	LI0887	-	hypothetical protein
885	 34.44	0	1104132..1104584	+	150	94987330	-	LI0888	-	universal stress protein UspA-like nucleotide-binding protein
886	 31.28	-1	1105139..1105771	-	210	94987331	-	LI0889	-	hypothetical protein
887	 33.01	0	1106149..1110171	-	1340	94987332	-	LI0890	-	hypothetical protein
888	 32.28	0	1111143..1111616	+	157	94987333	-	LI0891	-	hypothetical protein
889	 33.57	0	1111705..1113402	+	565	94987334	lnt	LI0892	-	apolipoprotein N-acyltransferase
890	 36.27	0	1113451..1114539	+	362	94987335	-	LI0893	-	protein chain release factor B
891	 37.32	0	1114982..1115257	+	91	94987336	himD	LI0894	-	nucleoid DNA-binding protein
892	 34.63	0	1115585..1116430	+	281	94987337	dapF	LI0895	-	diaminopimelate epimerase
893	 34.44	0	1116477..1117382	+	301	94987338	dapA	LI0896	-	dihydrodipicolinate synthase
894	 33.42	0	1117584..1118747	+	387	94987339	araJ	LI0897	-	protein AraJ
895	 34.23	0	1118929..1119711	+	260	94987340	tatD	LI0898	-	Mg-dependent DNase
896	 31.62	0	1119740..1120381	-	213	94987341	-	LI0899	-	hypothetical protein
897	 29.35	-1	1120638..1121039	+	133	94987342	-	LI0900	-	metal-dependent hydrolase
898	 33.02	0	1121253..1121570	+	105	94987343	dsr	LI0901	-	sulfite reductase, dissimilatory-type gamma subunit
899	 34.41	0	1121916..1122938	+	340	94987344	-	LI0902	-	outer membrane protein
900	 28.66	-1	1122971..1123441	+	156	94987345	-	LI0903	-	hypothetical protein
901	 36.96	0	1123545..1127711	-	1388	94987346	rpoB	LI0904	-	DNA-directed RNA polymerase, beta subunit/140 kD subunit
902	 37.72	+1	1127787..1131908	-	1373	94987347	rpoB	LI0905	-	DNA-directed RNA polymerase subunit beta
903	 35.42	0	1132246..1133538	-	430	94987348	hemL	LI0906	-	glutamate-1-semialdehyde aminotransferase
904	 34.93	0	1133538..1134038	-	166	94987349	nirH	LI0907	-	transcriptional regulators
905	 36.08	0	1134626..1135717	+	363	94987350	hypD	LI0908	-	hydrogenase maturation factor
906	 34.49	0	1136500..1137279	-	259	94987351	lgt	LI0909	-	prolipoprotein diacylglyceryltransferase
907	 33.19	0	1137481..1138158	-	225	94987352	cmk	LI0910	-	cytidylate kinase
908	 32.44	0	1138388..1139284	-	298	94987353	-	LI0911	-	hypothetical protein
909	 38.28	+1	1139678..1141579	+	633	94987354	dnaK	LI0912	-	molecular chaperone dnaK
910	 34.11	0	1141712..1143127	-	471	94987355	aspA	LI0913	-	aspartate ammonia-lyase
911	 33.67	0	1143320..1144207	-	295	94987356	dacC	LI0914	-	D-alanyl-D-alanine carboxypeptidase
912	 34.31	0	1144573..1145496	+	307	94987357	livE	LI0915	-	branched-chain amino acid aminotransferase
913	 32.23	0	1145527..1147251	+	574	94987358	dnaX	LI0916	-	DNA polymerase III, gamma/tau subunits
914	 33.65	0	1147270..1147581	+	103	94987359	-	LI0917	-	hypothetical protein
915	 35.62	0	1147646..1148257	+	203	94987360	recR	LI0918	-	recombinational DNA repair protein
916	 30.46	-1	1148418..1149008	-	196	94987361	-	LI0919	-	helicase family protein
917	 35.44	0	1149173..1150072	-	299	94987362	-	LI0920	-	membrane proteins related to metalloendopeptidases
918	 35.90	0	1150886..1152172	+	428	94987363	purD	LI0921	-	phosphoribosylamine--glycine ligase
919	 37.21	0	1152159..1152674	+	171	94987364	purK	LI0922	-	phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
920	 32.23	0	1152735..1153367	+	210	94987365	lepB	LI0923	-	Signal peptidase I
921	 35.20	0	1153381..1153701	-	106	94987366	qacE	LI0924	-	membrane transporters of cations and cationic drugs
922	 34.66	0	1153732..1154109	-	125	94987367	qacE	LI0925	-	membrane transporters of cations and cationic drugs
923	 33.28	0	1154151..1156142	-	663	94987368	mdoB	LI0926	-	hypothetical protein
924	 32.94	0	1156205..1157719	-	504	94987369	mviN	LI0927	-	uncharacterized membrane protein, putative virulence factor
925	 35.75	0	1157845..1158960	+	371	94987370	tgt	LI0928	-	queuine/archaeosine tRNA-ribosyltransferase
34.48	MEAN

3.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.