IslandPathversion 1.0

IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.48 STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
780	 31.00	-1	972160..972975	-	271	94987225	-	LI0783	-	hypothetical protein
781	 35.69	0	973029..975491	-	820	94987226	gyrA	LI0784	-	Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
782	 33.58	0	975610..978009	-	799	94987227	gyrB	LI0785	-	Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
783	 31.08	-1	978042..979193	-	383	94987228	dnaN	LI0786	-	DNA polymerase sliding clamp subunit (PCNA homolog)
784	 30.08	-1	979314..980636	-	440	94987229	dnaA	LI0787	-	ATPase involved in DNA replication initiation
785	 30.34	-1	980888..982222	+	444	94987230	-	LI0788	-	membrane proteins related to metalloendopeptidases
786	 32.88	0	982255..983355	+	366	94987231	queA	LI0789	-	S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuine synthetase)
787	 37.29	0	984330..985391	+	353	94987232	vorB	LI0790	-	2-ketoisovalerate ferredoxin reductase
788	 37.94	+1	985391..986194	+	267	94987233	porB	LI0791	-	ferredoxin oxidoreductases, beta subunit
789	 36.46	0	986196..986738	+	180	94987234	porB	LI0792	-	ferredoxin oxidoreductases, gamma subunit
790	 33.10	0	987288..988580	+	430	94987235	-	LI0793	-	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)
791	 36.03	0	988737..989366	+	209	94987236	clpP	LI0794	-	protease subunit of ATP-dependent Clp proteases
792	 36.20	0	989642..990895	+	417	94987237	clpX	LI0795	-	ATP-dependent protease ATP-binding subunit
793	 35.90	0	990983..993436	+	817	94987238	lon	LI0796	-	ATP-dependent protease
794	 33.59	0	993461..993847	-	128	94987239	-	LI0797	-	hypothetical protein
795	 33.54	0	994282..995271	+	329	94987240	-	LI0798	-	hypothetical protein
796	 32.24	0	995278..995916	-	212	94987241	-	LI0799	-	hypothetical protein
797	 36.54	0	995965..996681	-	238	94987242	-	LI0800	-	hypothetical protein
798	 32.24	0	996842..998215	+	457	94987243	glmU	LI0801	-	N-acetylglucosamine-1-phosphate uridyltransferase
799	 37.04	0	999188..1000750	+	520	94987244	-	LI0802	-	HD superfamily hydrolase
800	 33.33	0	1000833..1001591	+	252	94987245	-	LI0803	-	hypothetical protein
801	 37.47	0	1001682..1002140	-	152	94987246	-	LI0804	-	hypothetical protein
802	 35.10	0	1002133..1002810	-	225	94987247	-	LI0805	-	hypothetical protein
803	 30.67	-1	1002865..1003953	-	362	94987248	menE	LI0806	-	O-succinylbenzoic acid--CoA ligase
804	 35.64	0	1004052..1004873	-	273	94987249	menB	LI0807	-	naphthoate synthase
805	 32.87	0	1004883..1005317	-	144	94987250	comA	LI0808	-	putative hydrolase, haloacid dehalogenase-like hydrolase
806	 32.05	0	1005673..1006062	-	129	94987251	-	LI0809	-	hypothetical protein
807	 33.61	0	1006385..1007098	+	237	94987252	-	LI0810	-	integral membrane protein, interacts with FtsH
808	 34.72	0	1007157..1008167	-	336	94987253	pit	LI0811	-	phosphate/sulphate permeases
809	 27.83	-2	1008160..1008795	-	211	94987254	-	LI0812	-	hypothetical protein
810	 33.52	0	1010184..1011809	+	541	94987255	rluD	LI0813	-	pseudouridylate synthases, 23S RNA-specific
811	 35.37	0	1012019..1012804	+	261	94987256	soj	LI0814	-	ATPases involved in chromosome partitioning
812	 35.73	0	1012884..1013843	+	319	94987257	spo0J	LI0815	-	transcriptional regulator
813	 35.45	0	1013959..1014996	+	345	94987258	-	LI0816	-	ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase
814	 28.48	-1	1015004..1016197	-	397	94987259	hemN	LI0817	-	coproporphyrinogen III oxidase-like protein
815	 34.18	0	1016534..1017481	+	315	94987260	pyrB	LI0818	-	aspartate carbamoyltransferase catalytic subunit
816	 36.64	0	1017493..1018764	+	423	94987261	pyrC	LI0819	-	dihydroorotase-like protein
817	 34.37	0	1018869..1019642	-	257	94987262	-	LI0820	-	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
818	 33.19	0	1019930..1021303	+	457	94987263	miaB	LI0821	-	2-methylthioadenine synthetase
819	 31.43	0	1021458..1022141	+	227	94987264	-	LI0822	-	PHP family histidinol phosphatase/hydrolase
820	 35.90	0	1022176..1023267	+	363	94987265	pepQ	LI0823	-	Xaa-Pro aminopeptidase
821	 33.71	0	1023291..1024349	+	352	94987266	-	LI0824	-	glycosyltransferase
822	 33.57	0	1024378..1025664	+	428	94987267	-	LI0825	-	Lipid A core-O-antigen ligase and related enzymes
823	 35.24	0	1025679..1025888	-	69	94987268	rpmB	LI0826	-	50S ribosomal protein L28
824	 35.47	0	1026067..1028082	+	671	94987269	-	LI0827	-	lipoprotein
825	 38.20	+1	1028105..1029172	-	355	94987270	gpsA	LI0828	-	glycerol-3-phosphate dehydrogenase
826	 36.59	0	1029763..1030869	+	368	94987271	potA	LI0829	-	putrescine/spermidine ABC transporter ATPase protein
827	 32.32	0	1030856..1031740	+	294	94987272	potB	LI0830	-	ABC-type spermidine/putrescine transport system, permease component I
828	 32.95	0	1031740..1032516	+	258	94987273	potC	LI0831	-	spermidine/putrescine ABC transporter membrane protein
829	 31.53	0	1032574..1033626	+	350	94987274	potD	LI0832	-	spermidine/putrescine-binding periplasmic protein
830	 37.43	0	1033802..1035070	-	422	94987275	-	LI0833	-	hypothetical protein
831	 32.66	0	1035090..1035533	-	147	94987276	-	LI0834	-	hypothetical protein
832	 31.78	0	1035578..1036222	-	214	94987277	-	LI0835	-	hypothetical protein
833	 36.84	0	1036458..1037198	+	246	94987278	-	LI0836	-	transcriptional regulator
834	 33.55	0	1037498..1040206	+	902	94987279	-	LI0837	-	hypothetical protein
835	 37.65	+1	1040246..1041496	-	416	94987280	murA	LI0838	-	UDP-N-acetylglucosamine enolpyruvyl transferase
836	 38.08	+1	1041779..1042558	-	259	94987281	xthA	LI0839	-	exonuclease III
837	 32.52	0	1042878..1043369	-	163	94987282	-	LI0840	-	hypothetical protein
838	 32.79	0	1043947..1044681	-	244	94987283	-	LI0841	-	putative invasin
839	 35.93	0	1045546..1047813	+	755	94987284	katE	LI0842	-	hydroperoxidase II
840	 34.70	0	1048872..1050629	+	585	94987285	tsr	LI0843	-	methyl-accepting chemotaxis protein
841	 33.25	0	1050746..1052017	-	423	94987286	-	LI0844	-	tRNA and rRNA cytosine-C5-methylases
842	 34.61	0	1052160..1053803	+	547	94987287	-	LI0845	-	hypothetical protein
843	 35.20	0	1053988..1055109	+	373	94987288	-	LI0846	-	lipopolysaccharide core biosynthesis protein RfaG (glucosyltransferase I)
844	 31.32	-1	1055274..1056068	+	264	94987289	-	LI0847	-	hypothetical protein
845	 35.72	0	1056140..1057477	-	445	94987290	gidA	LI0848	-	tRNA (uracil-5-)-methyltransferase Gid
846	 31.76	0	1057662..1058297	-	211	94987291	-	LI0849	-	HD superfamily hydrolase
847	 33.42	0	1058349..1059566	-	405	94987292	-	LI0850	-	hypothetical protein
848	 37.31	0	1059742..1060068	+	108	94987293	-	LI0851	-	NAD(P)H-dependent flavin reductase
849	 33.00	0	1060120..1060419	+	99	94987294	-	LI0852	-	NAD(P)H nitroreductase
850	 29.90	-1	1060422..1060829	-	135	94987295	-	LI0853	-	redox protein, regulator of disulfide bond formation
851	 39.62	+1	1062640..1063959	-	439	94987296	fliI	LI0854	-	flagellar biosynthesis/type III secretory pathway ATPase
852	 34.51	0	1063984..1065429	-	481	94987297	-	LI0855	-	flagellar biosynthesis/type III secretory pathway protein
853	 37.05	0	1065476..1066471	-	331	94987298	fliG	LI0856	-	flagellar motor switch protein
854	 36.40	0	1066878..1068542	-	554	94987299	fliF	LI0857	-	flagellar biosynthesis/type III secretory pathway lipoprotein
855	 33.62	0	1068655..1069002	-	115	94987300	fliE	LI0858	-	flagellar hook-basal body protein
856	 38.55	+1	1069051..1069491	-	146	94987301	flgC	LI0859	-	flagellar basal body rod protein
857	 36.23	0	1069494..1069907	-	137	94987302	flgB	LI0860	-	flagellar basal body rod protein FlgB
858	 32.67	0	1070196..1070954	-	252	94987303	cbiO	LI0861	-	ABC-type cobalt transport system, ATPase component
859	 28.78	-1	1070963..1071709	-	248	94987304	-	LI0862	-	hypothetical protein
860	 33.33	0	1071699..1072334	-	211	94987305	cbiM	LI0863	-	cobalt transport protein CbiM
861	 33.33	0	1072321..1072818	-	165	94987306	-	LI0864	-	hypothetical protein
862	 34.80	0	1073007..1074569	-	520	94987307	mviN	LI0865	-	uncharacterized membrane protein, putative virulence factor
863	 33.43	0	1074655..1076736	-	693	94987308	-	LI0866	-	membrane metal-binding protein
864	 34.26	0	1077738..1078598	-	286	94987309	murI	LI0867	-	glutamate racemase
865	 32.60	0	1078883..1079695	-	270	94987310	rluB	LI0868	-	16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
866	 33.50	0	1079867..1081684	+	605	94987311	-	LI0869	-	ABC-type multidrug transport system, ATPase and permease components
867	 35.81	0	1081659..1082303	+	214	94987312	-	LI0870	-	hypothetical protein
868	 34.80	0	1082307..1083191	+	294	94987313	htrB	LI0871	-	acyltransferase
869	 36.03	0	1083991..1085361	-	456	94987314	-	LI0872	-	hypothetical protein
870	 26.77	-2	1085499..1086062	-	187	94987315	-	LI0873	-	ACT domain-containing protein
871	 36.88	0	1086267..1088042	+	591	94987316	-	LI0874	-	formate--tetrahydrofolate ligase
872	 35.68	0	1088081..1088974	+	297	94987317	-	LI0875	-	methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase
873	 32.66	0	1088986..1090329	-	447	94987318	-	LI0876	-	tRNA and rRNA cytosine-C5-methylases
874	 35.15	0	1090388..1091761	-	457	94987319	atoC	LI0877	-	response regulator
875	 32.57	0	1091827..1093269	-	480	94987320	atoS	LI0878	-	Signal transduction histidine kinase
876	 35.81	0	1093271..1094605	-	444	94987321	pgi	LI0879	-	glucose-6-phosphate isomerase
877	 33.59	0	1095072..1095860	+	262	94987322	sfsA	LI0880	-	DNA-binding protein, stimulates sugar fermentation
878	 27.70	-2	1095872..1096972	-	366	94987323	-	LI0881	-	permease
879	 32.47	0	1096969..1098123	-	384	94987324	-	LI0882	-	permease
34.48	MEAN

3.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.