IslandPathversion 1.0

IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.48 STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
709	 36.93	0	896405..897349	-	314	94987154	pyrD	LI0712	-	dihydroorotate dehydrogenase
710	 36.43	0	897346..898152	-	268	94987155	pyrDII	LI0713	-	2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
711	 38.14	+1	898390..899574	+	394	94987156	argJ	LI0714	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
712	 34.37	0	899739..900704	+	321	94987157	rluD	LI0715	-	pseudouridylate synthases, 23S RNA-specific
713	 31.42	0	900834..901616	+	260	94987158	gln	LI0716	-	amino acid ABC transporter periplasmic protein
714	 34.19	0	901672..902370	+	232	94987159	glnP	LI0717	-	ABC-type amino acid transport system, permease component
715	 33.22	0	902381..903256	+	291	94987160	glnQ	LI0718	-	ABC-type polar amino acid transport system, ATPase component
716	 33.77	0	903258..903944	+	228	94987161	-	LI0719	-	ABC-type amino acid transport system, permease component
717	 35.37	0	903994..905814	+	606	94987162	lepA	LI0720	-	GTP-binding protein LepA
718	 31.44	0	905910..906278	-	122	94987163	-	LI0721	-	transporter, putative
719	 32.66	0	906849..908045	-	398	94987164	-	LI0722	-	hypothetical protein
720	 33.25	0	908182..909393	-	403	94987165	mltA	LI0723	-	membrane-bound lytic murein transglycosylase
721	 33.33	0	909409..909858	+	149	94987166	-	LI0724	-	thioesterase
722	 30.90	-1	910107..910928	-	273	94987167	hisB	LI0725	-	PHP family histidinol phosphatase/hydrolase
723	 37.59	+1	911020..912195	-	391	162138293	metK	LI0726	-	S-adenosylmethionine synthetase
724	 31.81	0	912401..912991	+	196	94987169	-	LI0727	-	hypothetical protein
725	 33.45	0	912997..913881	+	294	94987170	lytB	LI0728	-	ribosomal protein S1
726	 35.86	0	913946..914896	+	316	94987171	cheV	LI0729	-	chemotaxis signal transduction protein
727	 35.89	0	914956..916287	-	443	94987172	ugd	LI0730	-	UDP-glucose 6-dehydrogenase
728	 32.28	0	916424..916801	+	125	94987173	acpS	LI0731	-	holo-[acyl-carrier protein] synthase
729	 38.20	+1	916828..917361	+	177	94987174	hslV	LI0732	-	ATP-dependent protease peptidase subunit
730	 33.08	0	917632..918429	+	265	94987175	-	LI0733	-	amino acid ABC transporter periplasmic protein
731	 37.47	0	918588..919070	+	160	94987176	-	LI0734	-	hypothetical protein
732	 33.55	0	919170..920087	+	305	94987177	ychB	LI0735	-	4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase
733	 38.20	+1	920202..921167	+	321	94987178	prsA	LI0736	-	phosphoribosylpyrophosphate synthetase
734	 33.50	0	921211..921804	+	197	94987179	-	LI0737	-	50S ribosomal protein L25/general stress protein Ctc
735	 33.99	0	921880..922485	+	201	94987180	-	LI0738	-	peptidyl-tRNA hydrolase
736	 28.43	-1	922741..923433	+	230	94987181	-	LI0739	-	hypothetical protein
737	 36.73	0	923583..924377	+	264	94987182	flgF	LI0740	-	flagellar basal body rod protein
738	 39.44	+1	924392..925177	+	261	94987183	flgG	LI0741	-	flagellar basal body rod protein FlgG
739	 35.67	0	925203..926186	+	327	94987184	-	LI0742	-	hypothetical protein
740	 37.52	0	926204..926896	+	230	94987185	flgH	LI0743	-	flagellar basal body L-ring protein
741	 38.42	+1	926942..928081	+	379	94987186	flgI	LI0744	-	flagellar basal body P-ring protein
742	 33.04	0	928086..928769	+	227	94987187	flgJ	LI0745	-	membrane proteins related to metalloendopeptidases
743	 34.46	0	928976..929506	+	176	94987188	-	LI0746	-	hypothetical protein
744	 36.40	0	929506..931623	+	705	94987189	flgK	LI0747	-	flagellar hook-associated protein
745	 37.39	0	931633..933210	+	525	94987190	flgL	LI0748	-	flagellin-like protein
746	 32.17	0	933304..933993	+	229	94987191	-	LI0749	-	flagellar assembly protein FliW
747	 35.86	0	934221..935801	+	526	94987192	-	LI0750	-	hypothetical protein
748	 38.43	+1	935839..937368	-	509	94987193	-	LI0751	-	Mg chelatase-related protein
749	 33.63	0	937365..939059	-	564	94987194	-	LI0752	-	Sulfate transporter family protein
750	 35.50	0	939166..939858	-	230	94987195	glnP	LI0753	-	ABC-type amino acid transport system, permease component
751	 33.07	0	939981..940730	-	249	94987196	glnH	LI0754	-	amino acid ABC transporter periplasmic protein
752	 36.70	0	941271..942995	-	574	94987197	rpsA	LI0755	-	30S ribosomal protein S1
753	 37.24	0	943310..943795	-	161	94987198	rnh	LI0756	-	ribonuclease HI
754	 31.43	0	943971..944864	-	297	94987199	menA	LI0757	-	hypothetical protein
755	 33.65	0	944976..945602	-	208	94987200	-	LI0758	-	hypothetical protein
756	 34.32	0	945599..946513	-	304	94987201	menA	LI0759	-	hypothetical protein
757	 37.00	0	946612..947238	-	208	94987202	tmk	LI0760	-	thymidylate kinase
758	 33.71	0	947223..948281	-	352	94987203	cbf1	LI0761	-	HD-superfamily hydrolase
759	 34.66	0	948405..949160	+	251	94987204	surE	LI0762	-	acid phosphatase
760	 37.23	0	949353..950276	+	307	94987205	fba	LI0763	-	fructose/tagatose bisphosphate aldolase
761	 36.63	0	950386..951387	+	333	94987206	gapA	LI0764	-	glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase
762	 33.11	0	951412..952311	-	299	94987207	-	LI0765	-	hypothetical protein
763	 36.33	0	952368..953336	-	322	94987208	fmt	LI0766	-	methionyl-tRNA formyltransferase
764	 32.75	0	953333..953848	-	171	94987209	def	LI0767	-	N-formylmethionyl-tRNA deformylase
765	 34.64	0	954008..955000	+	330	94987210	nifr3	LI0768	-	tRNA-dihydrouridine synthase
766	 36.52	0	955017..955769	-	250	94987211	-	LI0769	-	hypothetical protein
767	 37.63	+1	955760..956341	-	193	94987212	-	LI0770	-	5-formyltetrahydrofolate cyclo-ligase
768	 34.68	0	957340..959340	+	666	94987213	rne	LI0771	-	ribonucleases G and E
769	 33.84	0	959344..959937	+	197	94987214	-	LI0772	-	hypothetical protein
770	 36.77	0	959970..961946	-	658	94987215	kefC	LI0773	-	Kef-type K+ transport systems, membrane components
771	 33.26	0	962215..963630	+	471	94987216	trkA	LI0774	-	potassium transporter peripheral membrane component
772	 33.67	0	963721..965187	+	488	94987217	trkH	LI0775	-	Trk-type K+ transport systems, membrane components
773	 34.99	0	965279..965941	+	220	94987218	psd	LI0776	-	phosphatidylserine decarboxylase
774	 30.80	-1	966003..966752	+	249	94987219	-	LI0777	-	phosphatidylserine synthase
775	 33.64	0	966810..967460	-	216	94987220	nth	LI0778	-	endonuclease III, putative
776	 33.64	0	967580..967900	+	106	94987221	cutA	LI0779	-	divalent cation tolerance protein,
777	 33.12	0	967901..968842	+	313	94987222	fruK	LI0780	-	ribokinase family sugar kinase
778	 32.41	0	969129..970853	+	574	94987223	-	LI0781	-	5-enolpyruvylshikimate-3-phosphate synthase
779	 34.29	0	970873..971706	+	277	94987224	thiD	LI0782	-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
780	 31.00	-1	972160..972975	-	271	94987225	-	LI0783	-	hypothetical protein
781	 35.69	0	973029..975491	-	820	94987226	gyrA	LI0784	-	Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
782	 33.58	0	975610..978009	-	799	94987227	gyrB	LI0785	-	Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
783	 31.08	-1	978042..979193	-	383	94987228	dnaN	LI0786	-	DNA polymerase sliding clamp subunit (PCNA homolog)
784	 30.08	-1	979314..980636	-	440	94987229	dnaA	LI0787	-	ATPase involved in DNA replication initiation
785	 30.34	-1	980888..982222	+	444	94987230	-	LI0788	-	membrane proteins related to metalloendopeptidases
786	 32.88	0	982255..983355	+	366	94987231	queA	LI0789	-	S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuine synthetase)
787	 37.29	0	984330..985391	+	353	94987232	vorB	LI0790	-	2-ketoisovalerate ferredoxin reductase
788	 37.94	+1	985391..986194	+	267	94987233	porB	LI0791	-	ferredoxin oxidoreductases, beta subunit
789	 36.46	0	986196..986738	+	180	94987234	porB	LI0792	-	ferredoxin oxidoreductases, gamma subunit
790	 33.10	0	987288..988580	+	430	94987235	-	LI0793	-	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)
791	 36.03	0	988737..989366	+	209	94987236	clpP	LI0794	-	protease subunit of ATP-dependent Clp proteases
792	 36.20	0	989642..990895	+	417	94987237	clpX	LI0795	-	ATP-dependent protease ATP-binding subunit
793	 35.90	0	990983..993436	+	817	94987238	lon	LI0796	-	ATP-dependent protease
794	 33.59	0	993461..993847	-	128	94987239	-	LI0797	-	hypothetical protein
795	 33.54	0	994282..995271	+	329	94987240	-	LI0798	-	hypothetical protein
796	 32.24	0	995278..995916	-	212	94987241	-	LI0799	-	hypothetical protein
797	 36.54	0	995965..996681	-	238	94987242	-	LI0800	-	hypothetical protein
798	 32.24	0	996842..998215	+	457	94987243	glmU	LI0801	-	N-acetylglucosamine-1-phosphate uridyltransferase
799	 37.04	0	999188..1000750	+	520	94987244	-	LI0802	-	HD superfamily hydrolase
800	 33.33	0	1000833..1001591	+	252	94987245	-	LI0803	-	hypothetical protein
801	 37.47	0	1001682..1002140	-	152	94987246	-	LI0804	-	hypothetical protein
802	 35.10	0	1002133..1002810	-	225	94987247	-	LI0805	-	hypothetical protein
803	 30.67	-1	1002865..1003953	-	362	94987248	menE	LI0806	-	O-succinylbenzoic acid--CoA ligase
804	 35.64	0	1004052..1004873	-	273	94987249	menB	LI0807	-	naphthoate synthase
805	 32.87	0	1004883..1005317	-	144	94987250	comA	LI0808	-	putative hydrolase, haloacid dehalogenase-like hydrolase
806	 32.05	0	1005673..1006062	-	129	94987251	-	LI0809	-	hypothetical protein
807	 33.61	0	1006385..1007098	+	237	94987252	-	LI0810	-	integral membrane protein, interacts with FtsH
808	 34.72	0	1007157..1008167	-	336	94987253	pit	LI0811	-	phosphate/sulphate permeases
34.48	MEAN

3.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.