IslandPathversion 1.0

IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.48 STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
559	 28.38	-1	691765..692793	+	342	94987004	-	LI0562	-	hypothetical protein
560	 30.00	-1	693085..693444	-	119	94987005	-	LI0563	-	hypothetical protein
561	 32.93	0	693561..694052	+	163	94987006	pgpA	LI0564	-	phosphatidylglycerophosphatase A and related proteins
562	 34.38	0	694166..694642	+	158	94987007	-	LI0565	-	hypothetical protein
563	 37.67	+1	694775..696847	-	690	94987008	flgE	LI0566	-	flagellar hook protein FlgE
564	 38.21	+1	696931..697770	-	279	94987009	-	LI0567	-	flagellar hook capping protein
565	 36.56	0	697783..699609	-	608	94987010	-	LI0568	-	flagellar hook-length control protein
566	 34.04	0	699820..701229	-	469	94987011	-	LI0569	-	ADP-heptose:LPS heptosyltransferase
567	 39.32	+1	701958..702842	+	294	94987012	fliC	LI0570	-	flagellin-like protein
568	 33.33	0	703046..703747	-	233	94987013	rnc	LI0571	-	dsRNA-specific ribonuclease
569	 33.63	0	703881..704216	+	111	94987014	-	LI0572	-	hypothetical protein
570	 35.44	0	704639..705160	-	173	94987015	-	LI0573	-	RimM protein, required for 16S rRNA processing
571	 39.74	+1	705170..705403	-	77	94987016	-	LI0574	-	RNA-binding protein
572	 35.84	0	705860..707374	-	504	94987017	-	LI0575	-	Signal renition particle GTPase
573	 32.55	0	707511..708923	-	470	94987018	trmA	LI0576	-	RNA methyltransferase
574	 35.15	0	708959..709837	-	292	94987019	-	LI0577	-	dTDP-glucose pyrophosphorylase
575	 31.82	0	709985..710578	+	197	94987020	purH	LI0578	-	AICAR transformylase/IMP cyclohydrolase PurH
576	 36.03	0	710794..711201	+	135	94987021	mutT	LI0579	-	NTP pyrophosphohydrolases including oxidative damage repair enzymes
577	 34.52	0	711302..712312	-	336	94987022	-	LI0580	-	nucleoside-diphosphate-sugar epimerases
578	 33.33	0	712325..713056	-	243	94987023	-	LI0581	-	hypothetical protein
579	 37.97	+1	713038..714246	-	402	94987024	-	LI0582	-	phosphopantothenoylcysteine synthetase/decarboxylase
580	 35.34	0	714243..714791	-	182	94987025	-	LI0583	-	hypothetical protein
581	 34.15	0	715334..715945	+	203	94987026	-	LI0584	-	hypothetical protein
582	 35.24	0	716001..717314	+	437	94987027	-	LI0585	-	DNA repair exonuclease
583	 31.84	0	717314..721276	+	1320	94987028	-	LI0586	-	hypothetical protein
584	 36.74	0	721314..721958	-	214	94987029	-	LI0587	-	hypothetical protein
585	 32.28	0	722079..723026	-	315	94987030	tatC	LI0588	-	Sec-independent protein secretion pathway component TatC
586	 33.06	0	723056..723421	-	121	94987031	-	LI0589	-	Sec-independent protein secretion pathway components
587	 35.80	0	723704..725245	-	513	94987032	guaA	LI0590	-	bifunctional GMP synthase/glutamine amidotransferase protein
588	 38.14	+1	725358..726833	-	491	94987033	guaB	LI0591	-	IMP dehydrogenase/GMP reductase
589	 32.65	0	727151..727738	+	195	94987034	maa	LI0592	-	maltose transacetylase
590	 34.86	0	727939..729378	+	479	94987035	cls	LI0593	-	phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein
591	 34.73	0	729401..731842	-	813	94987036	rnb	LI0594	-	exoribonuclease R
592	 33.61	0	731866..733320	-	484	94987037	lpxK	LI0595	-	tetraacyldisaccharide-1-P 4'-kinase
593	 37.76	+1	733491..734009	-	172	94987038	tpx	LI0596	-	peroxiredoxin
594	 33.33	0	734850..737261	+	803	94987039	-	LI0597	-	TPR repeat-containing protein
595	 35.61	0	737302..739368	-	688	94987040	zntA	LI0598	-	cation-transporting ATPase, P-type
596	 33.81	0	739657..741138	-	493	94987041	panF	LI0599	-	sodium/panthothenate symporter
597	 27.32	-2	741141..741506	-	121	94987042	-	LI0600	-	hypothetical protein
598	 35.00	0	742192..743511	+	439	94987043	-	LI0601	-	voltage-gated chloride channel family protein
599	 30.92	-1	743611..744357	+	248	94987044	-	LI0602	-	metal dependent hydrolases
600	 29.84	-1	744711..746285	+	524	94987045	-	LI0603	-	two-component response regulator
601	 26.13	-2	746343..747425	+	360	94987046	-	LI0604	-	PleD
602	 33.79	0	747467..748333	-	288	94987047	-	LI0605	-	hypothetical protein
603	 32.19	0	748457..749158	-	233	94987048	-	LI0606	-	transcriptional regulator
604	 35.14	0	749754..751250	-	498	94987049	-	LI0607	-	TPR repeat-containing Zn-dependent protease
605	 34.36	0	751382..752839	-	485	94987050	cysS	LI0608	-	cysteinyl-tRNA synthetase
606	 33.33	0	752940..753368	-	142	94987051	rpiB	LI0609	-	ribose 5-phosphate isomerase RpiB
607	 28.70	-1	753377..753721	-	114	94987052	-	LI0610	-	hypothetical protein
608	 30.41	-1	753798..754583	-	261	94987053	-	LI0611	-	hypothetical protein
609	 33.97	0	754591..756312	-	573	94987054	-	LI0612	-	TPR repeat-containing protein
610	 34.80	0	756332..757489	-	385	94987055	sigB	LI0613	-	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
611	 29.91	-1	758603..759070	+	155	94987056	-	LI0614	-	Thiol-disulfide isomerase and thioredoxins
612	 34.00	0	759733..760479	+	248	94987057	-	LI0615	-	hypothetical protein
613	 37.01	0	760506..761837	+	443	94987058	radA	LI0616	-	DNA repair protein RadA
614	 37.27	0	761962..762291	+	109	94987059	yljA	LI0617	-	hypothetical protein
615	 35.60	0	762288..764534	+	748	94987060	-	LI0618	-	ATPases with chaperone activity, ATP-binding subunit
616	 37.41	0	764629..765315	+	228	94987061	aat	LI0619	-	leucyl/phenylalanyl-tRNA--protein transferase
617	 37.03	0	765529..766827	-	432	94987062	clr3	LI0620	-	deacetylase
618	 34.67	0	767002..767973	-	323	94987063	-	LI0621	-	nucleoside-diphosphate-sugar epimerases
619	 35.43	0	768129..769223	-	364	94987064	obgE	LI0622	-	GTPase ObgE
620	 31.72	0	769665..769973	-	102	94987065	rplU	LI0623	-	50S ribosomal protein L21
621	 39.22	+1	770472..770777	+	101	94987066	-	LI0624	-	GroES/HSP10-like protein
622	 39.04	+1	770925..772571	+	548	94987067	groEL	LI0625	-	chaperonin GroEL
623	 31.29	-1	772698..773579	+	293	94987068	-	LI0626	-	protoporphyrinogen oxidase HemK
624	 34.75	0	773705..774619	+	304	94987069	lpxC	LI0627	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
625	 35.70	0	774694..776640	+	648	94987070	mutL	LI0628	-	DNA mismatch repair ATPase
626	 36.44	0	776669..778213	-	514	94987071	-	LI0629	-	hypothetical protein
627	 34.94	0	778307..780802	-	831	94987072	secA	LI0630	-	preprotein translocase subunit SecA
628	 37.66	+1	780948..781964	-	338	94987073	hypE	LI0631	-	hydrogenase maturation factor
629	 32.05	0	782118..783515	-	465	94987074	-	LI0632	-	major facilitator superfamily permease
630	 34.28	0	783773..784090	-	105	94987075	flgM	LI0633	-	hypothetical protein
631	 28.95	-1	784118..784528	-	136	94987076	-	LI0634	-	hypothetical protein
632	 36.33	0	784911..786176	+	421	94987077	paaK	LI0635	-	coenzyme F390 synthetase
633	 37.79	+1	787082..787888	-	268	94987078	-	LI0636	-	hypothetical protein
634	 35.48	0	787956..788795	-	279	94987079	mutM	LI0637	-	formamidopyrimidine-DNA glycosylase
635	 31.09	-1	788870..789181	-	103	94987080	-	LI0638	-	hypothetical protein
636	 32.07	0	789827..790615	-	262	94987081	fliP	LI0639	-	flagellar biosynthesis protein FliP
637	 36.77	0	790596..791090	-	164	94987082	-	LI0640	-	flagellar biogenesis protein
638	 40.40	+1	791116..791610	-	164	94987083	fliN	LI0641	-	flagellar motor switch/type III secretory pathway protein
639	 34.39	0	791623..792192	-	189	94987084	fliL	LI0642	-	flagellar basal body-associated protein
640	 31.77	0	792334..793035	-	233	94987085	-	LI0643	-	TIM-barrel fold family protein
641	 35.90	0	793032..794006	-	324	94987086	era	LI0644	-	GTP-binding protein Era
642	 37.17	0	794233..795093	-	286	94987087	htpX	LI0645	-	Zn-dependent protease with chaperone function
643	 33.75	0	795375..797069	+	564	94987088	-	LI0646	-	N-methylhydantoinase A/acetone carboxylase, beta subunit
644	 32.20	0	797066..798295	-	409	94987089	-	LI0647	-	hypothetical protein
645	 35.86	0	799057..801705	+	882	94987090	valS	LI0648	-	valyl-tRNA synthetase
646	 35.60	0	802639..805194	+	851	94987091	-	LI0649	-	hypothetical protein
647	 34.75	0	806068..808959	+	963	94987092	-	LI0650	-	Zn-dependent peptidases, insulinase-like
648	 35.66	0	809068..810786	+	572	94987093	nadh	LI0651	-	rhodanese-related sulfurtransferase
649	 31.13	-1	810827..811642	-	271	94987094	-	LI0652	-	DNA adenine methylase
650	 34.44	0	811686..812498	-	270	94987095	-	LI0653	-	Zn-dependent protease with chaperone function
651	 35.50	0	812614..814878	+	754	94987096	topA	LI0654	-	zinc finger domain-containing protein
652	 31.58	0	814978..815604	+	208	94987097	gloB	LI0655	-	Zn-dependent hydrolases, including glyoxylases
653	 36.60	0	815668..816861	+	397	94987098	argG	LI0656	-	argininosuccinate synthase
654	 36.37	0	816949..818331	+	460	94987099	argH	LI0657	-	argininosuccinate lyase
655	 35.25	0	818505..819497	+	330	94987100	trmU	LI0658	-	tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
656	 26.30	-2	819913..820452	+	179	94987101	-	LI0659	-	shikimate kinase
657	 30.57	-1	820449..820991	-	180	94987102	bfr	LI0660	-	bacterioferritin (cytochrome b1)
658	 35.25	0	821433..823262	+	609	94987103	glmS	LI0661	-	glucosamine 6-phosphate synthetase
34.48	MEAN

3.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.