IslandPathversion 1.0

IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.48 STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
532	 36.45	0	653879..656764	+	961	94986977	infB	LI0535	-	translation initiation factor 2 (IF-2; GTPase)
533	 36.34	0	657048..658046	+	332	94986978	mgpa	LI0536	-	exopolyphosphatase-like protein
534	 33.49	0	658119..658769	-	216	94986979	SctR	LI0537	-	type III secretion system protein
535	 31.58	0	658794..659876	-	360	94986980	-	LI0538	-	putative translocation protein in type III secretion
536	 33.13	0	659919..660416	-	165	94986981	-	LI0539	-	hypothetical protein
537	 38.88	+1	660438..661754	-	438	94986982	sctN	LI0540	-	type III secretion system ATPase
538	 33.50	0	661775..662389	-	204	94986983	sctL	LI0541	-	type III secretion system protein
539	 35.60	0	662368..663072	-	234	94986984	-	LI0542	-	hypothetical protein
540	 34.59	0	663072..663944	-	290	94986985	nolT	LI0543	-	LscJ
541	 38.36	+1	663958..664335	-	125	94986986	-	LI0544	-	hypothetical protein
542	 30.98	-1	665261..665557	-	98	94986987	-	LI0545	-	hypothetical protein
543	 30.30	-1	665820..666182	+	120	94986988	-	LI0546	-	hypothetical protein
544	 37.13	0	666388..666729	+	113	94986989	-	LI0547	-	hypothetical protein
545	 37.23	0	666726..668828	+	700	94986990	yscV	LI0548	-	putative type III secretion pore protein
546	 32.95	0	668846..669106	+	86	94986991	yscS	LI0549	-	translocation protein in type III secretion
547	 34.80	0	669154..669969	+	271	94986992	yscT	LI0550	-	Type III secretion component protein SctT
548	 33.15	0	669966..671048	+	360	94986993	yscU	LI0551	-	translocation protein in type III secretion
549	 33.77	0	677116..681264	+	1382	94986994	-	LI0552	-	Signal transduction histidine kinase
550	 32.62	0	681626..682891	+	421	94986995	lysA	LI0553	-	diaminopimelate decarboxylase
551	 33.16	0	682917..684095	+	392	94986996	-	LI0554	-	hypothetical protein
552	 34.79	0	684290..685045	+	251	94986997	-	LI0555	-	hypothetical protein
553	 35.44	0	685227..686414	+	395	94986998	-	LI0556	-	major facilitator superfamily permease
554	 34.96	0	686543..687343	+	266	94986999	bacA	LI0557	-	uncharacterized bacitracin resistance protein
555	 33.33	0	687407..688678	-	423	94987000	-	LI0558	-	competence protein ComGF
556	 36.78	0	688844..689278	+	144	94987001	rplM	LI0559	-	50S ribosomal protein L13
557	 35.62	0	689297..689689	+	130	94987002	rpsI	LI0560	-	30S ribosomal protein S9
558	 34.96	0	689868..691523	+	551	94987003	-	LI0561	-	metallo-beta-lactamase superfamily hydrolase
559	 28.38	-1	691765..692793	+	342	94987004	-	LI0562	-	hypothetical protein
560	 30.00	-1	693085..693444	-	119	94987005	-	LI0563	-	hypothetical protein
561	 32.93	0	693561..694052	+	163	94987006	pgpA	LI0564	-	phosphatidylglycerophosphatase A and related proteins
562	 34.38	0	694166..694642	+	158	94987007	-	LI0565	-	hypothetical protein
563	 37.67	+1	694775..696847	-	690	94987008	flgE	LI0566	-	flagellar hook protein FlgE
564	 38.21	+1	696931..697770	-	279	94987009	-	LI0567	-	flagellar hook capping protein
565	 36.56	0	697783..699609	-	608	94987010	-	LI0568	-	flagellar hook-length control protein
566	 34.04	0	699820..701229	-	469	94987011	-	LI0569	-	ADP-heptose:LPS heptosyltransferase
567	 39.32	+1	701958..702842	+	294	94987012	fliC	LI0570	-	flagellin-like protein
568	 33.33	0	703046..703747	-	233	94987013	rnc	LI0571	-	dsRNA-specific ribonuclease
569	 33.63	0	703881..704216	+	111	94987014	-	LI0572	-	hypothetical protein
570	 35.44	0	704639..705160	-	173	94987015	-	LI0573	-	RimM protein, required for 16S rRNA processing
571	 39.74	+1	705170..705403	-	77	94987016	-	LI0574	-	RNA-binding protein
572	 35.84	0	705860..707374	-	504	94987017	-	LI0575	-	Signal renition particle GTPase
573	 32.55	0	707511..708923	-	470	94987018	trmA	LI0576	-	RNA methyltransferase
574	 35.15	0	708959..709837	-	292	94987019	-	LI0577	-	dTDP-glucose pyrophosphorylase
575	 31.82	0	709985..710578	+	197	94987020	purH	LI0578	-	AICAR transformylase/IMP cyclohydrolase PurH
576	 36.03	0	710794..711201	+	135	94987021	mutT	LI0579	-	NTP pyrophosphohydrolases including oxidative damage repair enzymes
577	 34.52	0	711302..712312	-	336	94987022	-	LI0580	-	nucleoside-diphosphate-sugar epimerases
578	 33.33	0	712325..713056	-	243	94987023	-	LI0581	-	hypothetical protein
579	 37.97	+1	713038..714246	-	402	94987024	-	LI0582	-	phosphopantothenoylcysteine synthetase/decarboxylase
580	 35.34	0	714243..714791	-	182	94987025	-	LI0583	-	hypothetical protein
581	 34.15	0	715334..715945	+	203	94987026	-	LI0584	-	hypothetical protein
582	 35.24	0	716001..717314	+	437	94987027	-	LI0585	-	DNA repair exonuclease
583	 31.84	0	717314..721276	+	1320	94987028	-	LI0586	-	hypothetical protein
584	 36.74	0	721314..721958	-	214	94987029	-	LI0587	-	hypothetical protein
585	 32.28	0	722079..723026	-	315	94987030	tatC	LI0588	-	Sec-independent protein secretion pathway component TatC
586	 33.06	0	723056..723421	-	121	94987031	-	LI0589	-	Sec-independent protein secretion pathway components
587	 35.80	0	723704..725245	-	513	94987032	guaA	LI0590	-	bifunctional GMP synthase/glutamine amidotransferase protein
588	 38.14	+1	725358..726833	-	491	94987033	guaB	LI0591	-	IMP dehydrogenase/GMP reductase
589	 32.65	0	727151..727738	+	195	94987034	maa	LI0592	-	maltose transacetylase
590	 34.86	0	727939..729378	+	479	94987035	cls	LI0593	-	phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase-like protein
591	 34.73	0	729401..731842	-	813	94987036	rnb	LI0594	-	exoribonuclease R
592	 33.61	0	731866..733320	-	484	94987037	lpxK	LI0595	-	tetraacyldisaccharide-1-P 4'-kinase
593	 37.76	+1	733491..734009	-	172	94987038	tpx	LI0596	-	peroxiredoxin
594	 33.33	0	734850..737261	+	803	94987039	-	LI0597	-	TPR repeat-containing protein
595	 35.61	0	737302..739368	-	688	94987040	zntA	LI0598	-	cation-transporting ATPase, P-type
596	 33.81	0	739657..741138	-	493	94987041	panF	LI0599	-	sodium/panthothenate symporter
597	 27.32	-2	741141..741506	-	121	94987042	-	LI0600	-	hypothetical protein
598	 35.00	0	742192..743511	+	439	94987043	-	LI0601	-	voltage-gated chloride channel family protein
599	 30.92	-1	743611..744357	+	248	94987044	-	LI0602	-	metal dependent hydrolases
600	 29.84	-1	744711..746285	+	524	94987045	-	LI0603	-	two-component response regulator
601	 26.13	-2	746343..747425	+	360	94987046	-	LI0604	-	PleD
602	 33.79	0	747467..748333	-	288	94987047	-	LI0605	-	hypothetical protein
603	 32.19	0	748457..749158	-	233	94987048	-	LI0606	-	transcriptional regulator
604	 35.14	0	749754..751250	-	498	94987049	-	LI0607	-	TPR repeat-containing Zn-dependent protease
605	 34.36	0	751382..752839	-	485	94987050	cysS	LI0608	-	cysteinyl-tRNA synthetase
606	 33.33	0	752940..753368	-	142	94987051	rpiB	LI0609	-	ribose 5-phosphate isomerase RpiB
607	 28.70	-1	753377..753721	-	114	94987052	-	LI0610	-	hypothetical protein
608	 30.41	-1	753798..754583	-	261	94987053	-	LI0611	-	hypothetical protein
609	 33.97	0	754591..756312	-	573	94987054	-	LI0612	-	TPR repeat-containing protein
610	 34.80	0	756332..757489	-	385	94987055	sigB	LI0613	-	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
611	 29.91	-1	758603..759070	+	155	94987056	-	LI0614	-	Thiol-disulfide isomerase and thioredoxins
612	 34.00	0	759733..760479	+	248	94987057	-	LI0615	-	hypothetical protein
613	 37.01	0	760506..761837	+	443	94987058	radA	LI0616	-	DNA repair protein RadA
614	 37.27	0	761962..762291	+	109	94987059	yljA	LI0617	-	hypothetical protein
615	 35.60	0	762288..764534	+	748	94987060	-	LI0618	-	ATPases with chaperone activity, ATP-binding subunit
616	 37.41	0	764629..765315	+	228	94987061	aat	LI0619	-	leucyl/phenylalanyl-tRNA--protein transferase
617	 37.03	0	765529..766827	-	432	94987062	clr3	LI0620	-	deacetylase
618	 34.67	0	767002..767973	-	323	94987063	-	LI0621	-	nucleoside-diphosphate-sugar epimerases
619	 35.43	0	768129..769223	-	364	94987064	obgE	LI0622	-	GTPase ObgE
620	 31.72	0	769665..769973	-	102	94987065	rplU	LI0623	-	50S ribosomal protein L21
621	 39.22	+1	770472..770777	+	101	94987066	-	LI0624	-	GroES/HSP10-like protein
622	 39.04	+1	770925..772571	+	548	94987067	groEL	LI0625	-	chaperonin GroEL
623	 31.29	-1	772698..773579	+	293	94987068	-	LI0626	-	protoporphyrinogen oxidase HemK
624	 34.75	0	773705..774619	+	304	94987069	lpxC	LI0627	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
625	 35.70	0	774694..776640	+	648	94987070	mutL	LI0628	-	DNA mismatch repair ATPase
626	 36.44	0	776669..778213	-	514	94987071	-	LI0629	-	hypothetical protein
627	 34.94	0	778307..780802	-	831	94987072	secA	LI0630	-	preprotein translocase subunit SecA
628	 37.66	+1	780948..781964	-	338	94987073	hypE	LI0631	-	hydrogenase maturation factor
629	 32.05	0	782118..783515	-	465	94987074	-	LI0632	-	major facilitator superfamily permease
630	 34.28	0	783773..784090	-	105	94987075	flgM	LI0633	-	hypothetical protein
631	 28.95	-1	784118..784528	-	136	94987076	-	LI0634	-	hypothetical protein
34.48	MEAN

3.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.