IslandPathversion 1.0

IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.48 STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
477	 32.64	0	587222..588658	+	478	94986922	-	LI0479	-	alginate O-acetylation protein
478	 33.03	0	588676..590637	+	653	94986923	-	LI0480	-	esterase MesA
479	 33.07	0	590701..591078	+	125	94986924	-	LI0481	-	hypothetical protein
480	 35.69	0	591277..592125	+	282	94986925	motA	LI0482	-	flagellar motor protein MotA
481	 39.22	+1	592170..592883	+	237	94986926	motB	LI0483	-	flagellar motor protein
482	 32.34	0	592910..594616	-	568	94986927	-	LI0484	-	hypothetical protein
483	 34.37	0	594907..596061	-	384	94986928	-	LI0485	-	major facilitator superfamily permease
484	 33.60	0	596408..597160	+	250	94986929	motA	LI0486	-	flagellar motor component
485	 38.00	+1	597267..597887	+	206	94986930	motB	LI0487	-	flagellar motor protein
486	 36.72	0	598269..599687	+	472	94986931	accC	LI0488	-	biotin carboxylase
487	 36.98	0	599700..601946	+	748	94986932	-	LI0489	-	Acetyl-CoA carboxylase alpha subunit
488	 34.56	0	601994..602644	+	216	94986933	-	LI0490	-	hypothetical protein
489	 34.49	0	602649..602993	+	114	94986934	-	LI0491	-	hypothetical protein
490	 35.75	0	603031..603486	+	151	94986935	-	LI0492	-	single-stranded DNA-binding protein
491	 34.86	0	603604..605301	-	565	94986936	glnS	LI0493	-	glutaminyl-tRNA synthetase
492	 34.13	0	605340..605717	-	125	94986937	-	LI0494	-	hypothetical protein
493	 34.65	0	605999..607135	+	378	94986938	-	LI0495	-	glycosyltransferase
494	 34.91	0	607449..608588	+	379	94986939	-	LI0496	-	branched chain amino acid ABC transporter, periplasmic amino acid-binding protein
495	 35.35	0	608669..609562	+	297	94986940	livH	LI0497	-	branched chain amino acid ABC transporter, permease protein
496	 33.05	0	609559..610602	+	347	94986941	livM	LI0498	-	branched chain amino acid ABC transporter, permease protein
497	 33.33	0	610599..611405	+	268	94986942	livG	LI0499	-	branched chain amino acid ABC transporter, ATP-binding protein
498	 36.10	0	611398..612120	+	240	94986943	livF	LI0500	-	branched chain amino acid ABC transporter, ATP-binding protein
499	 38.15	+1	612389..614464	+	691	94986944	hppA	LI0501	-	membrane-bound proton-translocating pyrophosphatase
500	 35.53	0	614756..615940	-	394	94986945	pabC	LI0502	-	periplasmic solute-binding protein
501	 31.70	0	615937..616365	-	142	94986946	-	LI0503	-	endonuclease
502	 37.68	+1	617036..617818	+	260	94986947	thiG	LI0504	-	thiazole synthase
503	 34.43	0	617868..618959	+	363	94986948	thiH	LI0505	-	thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes
504	 36.39	0	618969..619589	+	206	94986949	thiF	LI0506	-	thiamine biosynthesis protein ThiF
505	 35.58	0	619631..620785	-	384	94986950	-	LI0507	-	hypothetical protein
506	 33.77	0	620873..622246	-	457	94986951	-	LI0508	-	multidrug resistance protein norM
507	 36.47	0	622366..623799	-	477	94986952	-	LI0509	-	carbon starvation protein, membrane protein
508	 31.70	0	624527..625507	+	326	94986953	terC	LI0510	-	tellurium resistance protein TerC
509	 34.99	0	625603..626085	-	160	94986954	-	LI0511	-	hypothetical protein
510	 33.54	0	626142..627587	-	481	94986955	-	LI0512	-	sugar transferases involved in lipopolysaccharide synthesis
511	 36.78	0	627646..628749	-	367	94986956	-	LI0513	-	glycosyltransferase
512	 34.39	0	628999..630420	+	473	94986957	-	LI0514	-	Na+/H+ antiporter NhaD and related arsenite permeases
513	 33.74	0	630795..631769	+	324	94986958	ispB	LI0515	-	geranylgeranyl pyrophosphate synthase
514	 35.45	0	631796..634774	+	992	94986959	purL	LI0516	-	phosphoribosylformylglycinamidine synthase domain-containing protein
515	 35.31	0	634857..636629	-	590	94986960	rpoD	LI0517	-	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
516	 34.43	0	636619..638349	-	576	94986961	dnaG	LI0518	-	DNA primase
517	 33.55	0	638759..639226	-	155	94986962	-	LI0519	-	hypothetical protein
518	 36.64	0	639808..640170	+	120	94986963	-	LI0520	-	hypothetical protein
519	 35.05	0	640294..641109	-	271	94986964	ksgA	LI0521	-	dimethyladenosine transferase
520	 34.37	0	641246..642406	+	386	94986965	-	LI0522	-	glycosyltransferase
521	 35.71	0	642466..642885	-	139	94986966	-	LI0523	-	hypothetical protein
522	 37.68	+1	642894..643238	-	114	94986967	-	LI0524	-	hypothetical protein
523	 32.78	0	643246..643974	-	242	94986968	-	LI0525	-	flagellar basal body-associated protein
524	 31.76	0	644060..644440	-	126	94986969	cheY	LI0526	-	CheY-like receiver
525	 34.31	0	645210..646025	-	271	94986970	fleN	LI0528	-	ATPases involved in chromosome partitioning
526	 39.55	+1	646068..647129	-	353	94986971	flhF	LI0529	-	flagellar GTP-binding protein
527	 37.02	0	647129..649219	-	696	94986972	flhA	LI0530	-	flagellar biosynthesis protein FlhA
528	 35.75	0	649308..650381	-	357	94986973	flhB	LI0531	-	flagellar biosynthesis protein FlhB
529	 33.84	0	650434..651222	-	262	94986974	fliR	LI0532	-	flagellar biosynthesis pathway, component FliR
530	 33.67	0	651739..652329	+	196	94986975	-	LI0533	-	transcription elongation factor
531	 38.32	+1	652326..653648	+	440	94986976	nusA	LI0534	-	transcription elongation factor NusA
532	 36.45	0	653879..656764	+	961	94986977	infB	LI0535	-	translation initiation factor 2 (IF-2; GTPase)
533	 36.34	0	657048..658046	+	332	94986978	mgpa	LI0536	-	exopolyphosphatase-like protein
534	 33.49	0	658119..658769	-	216	94986979	SctR	LI0537	-	type III secretion system protein
535	 31.58	0	658794..659876	-	360	94986980	-	LI0538	-	putative translocation protein in type III secretion
536	 33.13	0	659919..660416	-	165	94986981	-	LI0539	-	hypothetical protein
537	 38.88	+1	660438..661754	-	438	94986982	sctN	LI0540	-	type III secretion system ATPase
538	 33.50	0	661775..662389	-	204	94986983	sctL	LI0541	-	type III secretion system protein
539	 35.60	0	662368..663072	-	234	94986984	-	LI0542	-	hypothetical protein
540	 34.59	0	663072..663944	-	290	94986985	nolT	LI0543	-	LscJ
541	 38.36	+1	663958..664335	-	125	94986986	-	LI0544	-	hypothetical protein
542	 30.98	-1	665261..665557	-	98	94986987	-	LI0545	-	hypothetical protein
543	 30.30	-1	665820..666182	+	120	94986988	-	LI0546	-	hypothetical protein
544	 37.13	0	666388..666729	+	113	94986989	-	LI0547	-	hypothetical protein
545	 37.23	0	666726..668828	+	700	94986990	yscV	LI0548	-	putative type III secretion pore protein
546	 32.95	0	668846..669106	+	86	94986991	yscS	LI0549	-	translocation protein in type III secretion
547	 34.80	0	669154..669969	+	271	94986992	yscT	LI0550	-	Type III secretion component protein SctT
548	 33.15	0	669966..671048	+	360	94986993	yscU	LI0551	-	translocation protein in type III secretion
549	 33.77	0	677116..681264	+	1382	94986994	-	LI0552	-	Signal transduction histidine kinase
550	 32.62	0	681626..682891	+	421	94986995	lysA	LI0553	-	diaminopimelate decarboxylase
551	 33.16	0	682917..684095	+	392	94986996	-	LI0554	-	hypothetical protein
552	 34.79	0	684290..685045	+	251	94986997	-	LI0555	-	hypothetical protein
553	 35.44	0	685227..686414	+	395	94986998	-	LI0556	-	major facilitator superfamily permease
554	 34.96	0	686543..687343	+	266	94986999	bacA	LI0557	-	uncharacterized bacitracin resistance protein
555	 33.33	0	687407..688678	-	423	94987000	-	LI0558	-	competence protein ComGF
556	 36.78	0	688844..689278	+	144	94987001	rplM	LI0559	-	50S ribosomal protein L13
557	 35.62	0	689297..689689	+	130	94987002	rpsI	LI0560	-	30S ribosomal protein S9
558	 34.96	0	689868..691523	+	551	94987003	-	LI0561	-	metallo-beta-lactamase superfamily hydrolase
559	 28.38	-1	691765..692793	+	342	94987004	-	LI0562	-	hypothetical protein
560	 30.00	-1	693085..693444	-	119	94987005	-	LI0563	-	hypothetical protein
561	 32.93	0	693561..694052	+	163	94987006	pgpA	LI0564	-	phosphatidylglycerophosphatase A and related proteins
562	 34.38	0	694166..694642	+	158	94987007	-	LI0565	-	hypothetical protein
563	 37.67	+1	694775..696847	-	690	94987008	flgE	LI0566	-	flagellar hook protein FlgE
564	 38.21	+1	696931..697770	-	279	94987009	-	LI0567	-	flagellar hook capping protein
565	 36.56	0	697783..699609	-	608	94987010	-	LI0568	-	flagellar hook-length control protein
566	 34.04	0	699820..701229	-	469	94987011	-	LI0569	-	ADP-heptose:LPS heptosyltransferase
567	 39.32	+1	701958..702842	+	294	94987012	fliC	LI0570	-	flagellin-like protein
568	 33.33	0	703046..703747	-	233	94987013	rnc	LI0571	-	dsRNA-specific ribonuclease
569	 33.63	0	703881..704216	+	111	94987014	-	LI0572	-	hypothetical protein
570	 35.44	0	704639..705160	-	173	94987015	-	LI0573	-	RimM protein, required for 16S rRNA processing
571	 39.74	+1	705170..705403	-	77	94987016	-	LI0574	-	RNA-binding protein
572	 35.84	0	705860..707374	-	504	94987017	-	LI0575	-	Signal renition particle GTPase
573	 32.55	0	707511..708923	-	470	94987018	trmA	LI0576	-	RNA methyltransferase
574	 35.15	0	708959..709837	-	292	94987019	-	LI0577	-	dTDP-glucose pyrophosphorylase
575	 31.82	0	709985..710578	+	197	94987020	purH	LI0578	-	AICAR transformylase/IMP cyclohydrolase PurH
576	 36.03	0	710794..711201	+	135	94987021	mutT	LI0579	-	NTP pyrophosphohydrolases including oxidative damage repair enzymes
34.48	MEAN

3.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.