IslandPathversion 1.0

IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.48 STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
362	 29.74	-1	456390..456695	-	101	94986807	-	LI0363	-	integral membrane protein
363	 30.52	-1	456801..457475	-	224	94986808	gph	LI0364	-	phosphatases
364	 32.92	0	457964..458686	-	240	94986809	-	LI0365	-	DNA uptake lipoprotein
365	 36.35	0	458692..459618	-	308	94986810	trxB	LI0366	-	thioredoxin reductase
366	 35.19	0	459615..459938	-	107	94986811	trxA	LI0367	-	Thiol-disulfide isomerase and thioredoxins
367	 35.96	0	460064..461131	-	355	94986812	ygjD	LI0368	-	metal-dependent proteases with chaperone activity
368	 36.90	0	461235..462242	-	335	94986813	fbp	LI0369	-	fructose-1,6-bisphosphatase
369	 33.22	0	462356..463225	-	289	94986814	-	LI0370	-	hypothetical protein
370	 35.26	0	463255..464136	-	293	94986815	-	LI0371	-	hypothetical protein
371	 26.92	-2	464159..464470	-	103	94986816	-	LI0372	-	hypothetical protein
372	 29.77	-1	464482..465042	-	186	94986817	pgsA	LI0373	-	phosphatidylglycerophosphate synthase
373	 34.68	0	465190..466008	-	272	94986818	-	LI0374	-	ATPases involved in chromosome partitioning
374	 38.62	+1	466089..466769	-	226	94986819	pcm	LI0375	-	protein-L-isoaspartate carboxylmethyltransferase
375	 34.40	0	467194..468507	+	437	94986820	-	LI0376	-	membrane proteins related to metalloendopeptidases
376	 35.27	0	468756..469631	+	291	94986821	rpsB	LI0377	-	30S ribosomal protein S2
377	 35.71	0	469657..470541	+	294	94986822	tsf	LI0378	-	elongation factor Ts
378	 32.93	0	470643..471623	+	326	94986823	galE	LI0379	-	nucleoside-diphosphate-sugar epimerases
379	 35.41	0	471627..472781	+	384	94986824	-	LI0380	-	cell wall biogenesis regulatory protein
380	 31.47	0	472788..473591	+	267	94986825	lgtF	LI0381	-	cell wall biosynthesis glycosyltransferase
381	 36.68	0	473612..474328	+	238	94986826	pyrH	LI0382	-	uridylate kinase
382	 31.04	-1	474332..474898	+	188	94986827	rrf	LI0383	-	ribosome recycling factor
383	 33.20	0	474934..475656	+	240	94986828	yaeS	LI0384	-	undecaprenyl pyrophosphate synthase
384	 34.09	0	475653..476450	+	265	94986829	cdsA	LI0385	-	CDP-diglyceride synthetase
385	 35.90	0	476513..477721	+	402	94986830	dxr	LI0386	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
386	 36.44	0	477721..478845	+	374	94986831	-	LI0387	-	membrane-associated Zn-dependent proteases 1
387	 33.46	0	478842..479636	+	264	94986832	-	LI0388	-	hypothetical protein
388	 32.66	0	480542..481426	+	294	94986833	-	LI0389	-	modification methylase BepI (cytosine-specific methyltransferase BepI)
389	 35.19	0	481800..483527	-	575	94986834	proS	LI0390	-	prolyl-tRNA synthetase
390	 35.79	0	483648..484544	-	298	94986835	-	LI0391	-	Fe-S oxidoreductase
391	 39.19	+1	484633..485673	+	346	94986836	mreB	LI0392	-	Actin-like ATPase involved in cell morphogenesis
392	 39.34	+1	485787..486668	+	293	94986837	mreC	LI0393	-	cell shape-determining protein
393	 31.63	0	486665..487135	+	156	94986838	-	LI0394	-	hypothetical protein
394	 37.18	0	487119..488912	+	597	94986839	-	LI0395	-	cell division protein FtsI/penicillin-binding protein 2
395	 35.30	0	488937..490052	+	371	94986840	rodA	LI0396	-	rod shape-determining protein RodA
396	 39.37	+1	490077..490424	+	115	94986841	-	LI0397	-	integral membrane protein CcmA involved in cell shape determination
397	 28.13	-2	490519..490941	+	140	94986842	-	LI0398	-	F0F1-type ATP synthase, subunit b
398	 29.02	-1	490959..491537	+	192	94986843	atpF	LI0399	-	F0F1-type ATP synthase, subunit b
399	 31.92	0	491534..492100	+	188	94986844	atpE	LI0400	-	F0F1 ATP synthase subunit delta
400	 38.46	+1	492090..493610	+	506	94986845	atpD	LI0401	-	F0F1 ATP synthase subunit alpha
401	 32.53	0	493615..494484	+	289	94986846	atpC	LI0402	-	F0F1 ATP synthase subunit gamma
402	 38.35	+1	494508..495923	+	471	94986847	atpB	LI0403	-	F0F1 ATP synthase subunit beta
403	 37.81	+1	495934..496335	+	133	94986848	atpA	LI0404	-	F0F1 ATP synthase subunit epsilon
404	 31.88	0	496471..497913	+	480	94986849	xseA	LI0405	-	exonuclease VII, large subunit
405	 36.44	0	497938..498807	+	289	94986850	-	LI0406	-	membrane proteins related to metalloendopeptidases
406	 34.66	0	499089..499991	+	300	94986851	-	LI0407	-	geranylgeranyl pyrophosphate synthase
407	 37.46	0	500065..501978	+	637	94986852	dsx	LI0408	-	1-deoxy-D-xylulose-5-phosphate synthase
408	 33.82	0	502001..503026	-	341	94986853	-	LI0409	-	ATPase
409	 39.10	+1	504438..505217	-	259	94986854	trpA	LI0410	-	bifunctional tryptophan synthase TRPB
410	 41.71	+2	505228..506397	-	389	94986855	trpB	LI0411	-	tryptophan synthase subunit beta
411	 35.11	0	506387..507004	-	205	94986856	trpF	LI0412	-	phosphoribosyl anthranilate isomerase
412	 34.44	0	506982..507704	-	240	94986857	trpC_2	LI0413	-	indole-3-glycerol phosphate synthase protein
413	 35.97	0	507758..508744	-	328	94986858	trpD	LI0414	-	anthranilate phosphoribosyltransferase
414	 35.62	0	508741..509877	-	378	94986859	-	LI0415	-	kynureninase (kyurenine hydrolase)
415	 38.46	+1	509880..510698	-	272	94986860	-	LI0416	-	ABC transporter permease
416	 35.37	0	510688..511422	-	244	94986861	-	LI0417	-	ABC transporter ATP-binding protein
417	 37.96	+1	511426..512397	-	323	94986862	-	LI0418	-	hypothetical protein
418	 30.26	-1	514084..514919	+	277	94986863	-	LI0419	-	short chain dehydrogenase, putative
419	 33.02	0	514967..515935	-	322	94986864	bioB	LI0420	-	biotin synthase
420	 33.60	0	515952..517097	+	381	94986865	bioF	LI0421	-	7-keto-8-aminopelargonate synthetase and related enzymes
421	 27.54	-2	517094..517732	+	212	94986866	-	LI0422	-	hypothetical protein
422	 28.49	-1	517752..518495	+	247	94986867	bioC	LI0424	-	ubiE/COQ5 methyltransferase family protein
423	 32.03	0	518495..519106	+	203	94986868	bioD	LI0425	-	dethiobiotin synthetase
424	 32.32	0	519110..520387	+	425	94986869	bioA	LI0426	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
425	 27.43	-2	520457..521032	-	191	94986870	-	LI0427	-	hypothetical protein
426	 35.09	0	522545..523912	+	455	94986871	putP	LI0428	-	sodium-dependent transporter
427	 34.73	0	524004..525074	-	356	94986872	hemN	LI0429	-	coproporphyrinogen III oxidase-like protein
428	 31.52	0	525142..525582	+	146	94986873	-	LI0430	-	histidine triad nucleotide-binding protein
429	 27.84	-2	525657..525947	+	96	94986874	himA	LI0431	-	nucleoid DNA-binding protein
430	 32.72	0	526092..526742	-	216	94986875	-	LI0432	-	S-adenosylmethionine-dependent methyltransferase involved in cell division
431	 34.91	0	527009..528847	-	612	94986876	dsbD	LI0433	-	hypothetical protein
432	 31.49	0	529148..530338	-	396	94986877	-	LI0434	-	glycosyltransferase
433	 34.96	0	530484..531716	+	410	94986878	aspC	LI0435	-	L,L-diaminopimelate aminotransferase
434	 32.39	0	531796..532644	-	282	94986879	-	LI0436	-	PhyA2
435	 35.14	0	532566..533117	-	183	94986880	-	LI0437	-	histidine acid phosphatase
436	 33.79	0	533368..534693	-	441	94986881	-	LI0438	-	PhyA2
437	 40.81	+2	535099..536355	+	418	94986882	hyaA	LI0439	-	hydrogenase-1 small subunit
438	 37.76	+1	536370..538178	+	602	94986883	hyaB	LI0440	-	hydrogenase-1 large subunit
439	 34.18	0	538288..538992	+	234	94986884	hyaC	LI0441	-	Ni/Fe-hydrogenase 1 B-type cytochrome subunit
440	 33.15	0	538995..539531	+	178	94986885	hyaD	LI0442	-	processing of HyaA and HyaB proteins
441	 28.40	-1	540291..540695	+	134	94986886	-	LI0443	-	hypothetical protein
442	 36.41	0	540700..541770	+	356	94986887	-	LI0444	-	glycosyltransferase
443	 33.55	0	541891..542361	-	156	94986888	dtd	LI0445	-	D-tyrosyl-tRNA deacylase
444	 35.83	0	542402..543601	-	399	94986889	-	LI0446	-	4-diphosphocytidyl-2-methyl-D-erithritol synthase
445	 46.26	+2	543696..543989	+	97	94986890	-	LI0447	-	hypothetical protein
446	 36.86	0	544048..544812	-	254	94986891	-	LI0448	-	hypothetical protein
447	 35.59	0	544847..545644	-	265	94986892	-	LI0449	-	hypothetical protein
448	 37.45	0	545767..546591	-	274	94986893	purL	LI0450	-	phosphoribosylformylglycinamidine synthase domain-containing protein
449	 35.75	0	546832..548484	+	550	94986894	pyrG	LI0451	-	CTP synthetase
450	 38.41	+1	548515..549321	+	268	94986895	kdsA	LI0452	-	2-dehydro-3-deoxyphosphooctonate aldolase
451	 34.31	0	549318..549929	+	203	94986896	-	LI0453	-	HAD superfamily low specificity phosphatase
452	 33.15	0	550004..550549	+	181	94986897	-	LI0454	-	hypothetical protein
453	 29.82	-1	550649..551218	+	189	94986898	-	LI0455	-	hypothetical protein
454	 33.89	0	551218..551940	+	240	94986899	-	LI0456	-	ABC transporter ATPase
455	 35.65	0	552086..553507	+	473	94986900	rpoN	LI0457	-	DNA-directed RNA polymerase specialized sigma subunit, sigma54-like protein
456	 33.15	0	553542..554078	+	178	94986901	-	LI0458	-	ribosome-associated protein Y (PSrp-1)
457	 33.44	0	554113..555078	+	321	94986902	-	LI0459	-	hypothetical protein
458	 34.06	0	555553..556104	+	183	94986903	-	LI0460	-	putative outer membrane protein
459	 36.94	0	556323..557819	-	498	94986904	-	LI0461	-	hypothetical protein
460	 35.91	0	557976..559373	-	465	94986905	gltX	LI0462	-	glutamyl-and glutaminyl-tRNA synthetases
461	 33.33	0	559477..560727	-	416	94986906	-	LI0463	-	hypothetical protein
34.48	MEAN

3.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.