IslandPathversion 1.0

IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.48 STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
273	 34.00	0	339468..340676	+	402	94986718	-	LI0274	-	uncharacterized flavoproteins
274	 37.10	0	340816..342117	+	433	94986719	cyoB	LI0275	-	cytochrome bd-type quinol oxidase, subunit 1
275	 35.37	0	342150..343178	+	342	94986720	cyoA	LI0276	-	cytochrome bd-type quinol oxidase, subunit 2
276	 35.00	0	343350..343829	-	159	94986721	-	LI0277	-	hypothetical protein
277	 36.73	0	344241..347804	+	1187	94986722	porA	LI0278	-	pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
278	 34.89	0	347892..350012	+	706	94986723	pta	LI0279	-	phosphate acetyltransferase
279	 34.81	0	350112..351326	+	404	94986724	ackA	LI0280	-	acetate kinase
280	 33.66	0	351351..352262	-	303	94986725	miaA	LI0281	-	tRNA delta(2)-isopentenylpyrophosphate transferase
281	 30.25	-1	352309..352827	-	172	94986726	kdtB	LI0282	-	phosphopantetheine adenylyltransferase
282	 35.60	0	352803..353375	-	190	94986727	-	LI0283	-	N6-adenine-specific methylase
283	 32.02	0	353516..355117	-	533	94986728	-	LI0284	-	RNA processing exonuclease
284	 34.21	0	355243..356610	-	455	94986729	-	LI0285	-	cell wall-associated hydrolases (invasion-associated proteins)
285	 34.23	0	356715..358055	-	446	94986730	-	LI0286	-	cell wall-associated hydrolases (invasion-associated proteins)
286	 33.38	0	358069..360267	-	732	94986731	recD	LI0287	-	exonuclease V subunit alpha
287	 33.81	0	361133..362386	+	417	94986732	-	LI0288	-	PAP2 superfamily protein
288	 35.48	0	362504..363340	-	278	94986733	-	LI0289	-	Pirin-related protein
289	 30.37	-1	363544..364893	-	449	94986734	-	LI0290	-	hypothetical protein
290	 33.14	0	365970..367550	-	526	94986735	-	LI0291	-	hypothetical protein
291	 31.08	-1	367971..368636	+	221	94986736	-	LI0292	-	Svh
292	 36.51	0	369577..370143	-	188	94986737	fumB	LI0293	-	fumarate hydratase
293	 36.52	0	370169..371014	-	281	94986738	fumA	LI0294	-	fumarate hydratase
294	 34.16	0	371279..371884	-	201	94986739	-	LI0295	-	hypothetical protein
295	 33.52	0	372325..373374	-	349	94986740	purM	LI0296	-	phosphoribosylaminoimidazole synthetase
296	 29.10	-1	373444..373821	+	125	94986741	-	LI0297	-	hypothetical protein
297	 28.84	-1	373843..374799	+	318	94986742	-	LI0298	-	hypothetical protein
298	 33.81	0	375220..377307	-	695	94986743	glyS	LI0299	-	glycyl-tRNA synthetase, beta subunit
299	 36.61	0	377313..378197	-	294	94986744	glyQ	LI0300	-	glycyl-tRNA synthetase subunit alpha
300	 32.00	0	378253..379002	-	249	94986745	recO	LI0301	-	hypothetical protein
301	 31.27	-1	379007..380026	-	339	94986746	-	LI0302	-	hypothetical protein
302	 31.93	0	380045..380971	-	308	94986747	ppi	LI0303	-	parvulin-like peptidyl-prolyl isomerase
303	 32.46	0	381141..382058	-	305	94986748	-	LI0304	-	parvulin-like peptidyl-prolyl isomerase
304	 36.07	0	382096..385563	-	1155	94986749	-	LI0305	-	transcription-repair coupling factor
305	 31.12	-1	385645..387228	-	527	94986750	-	LI0306	-	integral membrane protein
306	 36.29	0	387513..387986	+	157	94986751	greA	LI0307	-	transcription elongation factor greA
307	 35.24	0	388048..389358	+	436	94986752	-	LI0308	-	2-methylthioadenine synthetase
308	 34.47	0	389463..390344	+	293	94986753	yicC	LI0309	-	hypothetical protein
309	 35.99	0	390597..391235	+	212	94986754	gmk	LI0310	-	guanylate kinase
310	 35.65	0	391242..391931	+	229	94986755	pyrF	LI0311	-	orotidine-5'-phosphate decarboxylase
311	 32.60	0	392001..392819	+	272	94986756	-	LI0312	-	TPR repeat-containing protein
312	 36.03	0	392879..394585	+	568	94986757	recJ	LI0313	-	single-stranded DNA-specific exonuclease
313	 35.78	0	394647..395873	-	408	94986758	pepP	LI0314	-	Xaa-Pro aminopeptidase
314	 35.73	0	396014..396430	+	138	94986759	-	LI0315	-	CoA-binding protein
315	 30.26	-1	396615..397526	+	303	94986760	-	LI0316	-	DnaJ-class molecular chaperone
316	 33.33	0	397583..398272	+	229	94986761	-	LI0317	-	adenylate kinase-like kinase
317	 33.02	0	398358..399626	-	422	94986762	-	LI0318	-	hypothetical protein
318	 36.28	0	399629..400849	-	406	94986763	-	LI0319	-	ADP-heptose:LPS heptosyltransferase
319	 30.68	-1	401285..401962	+	225	94986764	cysG	LI0320	-	siroheme synthase
320	 33.45	0	401949..402839	+	296	94986765	resC	LI0321	-	ABC-type transport system involved in cytochrome c biogenesis, permease component
321	 34.68	0	402814..404079	+	421	94986766	hemA	LI0322	-	glutamyl-tRNA reductase
322	 35.17	0	404208..405515	+	435	94986767	-	LI0323	-	Signal renition particle GTPase
323	 36.24	0	405585..406238	+	217	94986768	thiE	LI0324	-	thiamine monophosphate synthase
324	 37.18	0	406369..407796	-	475	94986769	gltD	LI0325	-	NADPH-dependent glutamate synthase beta chain and related oxidoreductases
325	 32.25	0	408049..408975	+	308	94986770	-	LI0326	-	SAM-dependent methyltransferase
326	 29.56	-1	409616..410542	-	308	94986771	-	LI0327	-	hypothetical protein
327	 33.78	0	410586..411035	-	149	94986772	-	LI0328	-	hypothetical protein
328	 35.08	0	411409..413466	+	685	94986773	glgX	LI0329	-	Glyen debranching enzyme
329	 34.90	0	413485..414825	+	446	94986774	-	LI0330	-	putative glycosyltransferase
330	 33.95	0	414828..416114	+	428	94986775	amyA	LI0331	-	alpha-amylase
331	 36.05	0	416124..420386	+	1420	94986776	glgP	LI0332	-	carbohydrate phosphorylase family protein
332	 33.33	0	420460..421350	-	296	94986777	argB	LI0333	-	acetylglutamate kinase
333	 36.41	0	421371..422672	-	433	94986778	hslU	LI0334	-	ATP-dependent protease ATP-binding subunit
334	 35.31	0	422757..423464	-	235	94986779	livF	LI0335	-	branched chain amino acid ABC transporter, ATP-binding protein
335	 35.04	0	423517..424278	-	253	94986780	livG	LI0336	-	branched chain amino acid ABC transporter, ATP-binding protein
336	 33.74	0	424288..425274	-	328	94986781	livM	LI0337	-	branched chain amino acid ABC transporter, permease protein
337	 33.55	0	425271..426173	-	300	94986782	livH	LI0338	-	branched chain amino acid ABC transporter, permease protein
338	 33.96	0	426224..427348	-	374	94986783	-	LI0339	-	ABC-type branched-chain amino acid transport systems, periplasmic component
339	 32.31	0	427714..428691	+	325	94986784	-	LI0340	-	hypothetical protein
340	 34.18	0	428956..429660	+	234	94986785	-	LI0341	-	hypothetical protein
341	 36.75	0	429818..430519	+	233	94986786	leuB	LI0342	-	Rossmann fold nucleotide-binding protein
342	 35.38	0	430612..431100	+	162	94986787	codA	LI0343	-	cytosine/adenosine deaminases
343	 35.07	0	431319..431606	+	95	94986788	-	LI0344	-	hypothetical protein
344	 34.22	0	431805..432596	+	263	94986789	-	LI0345	-	SAM-dependent methyltransferases
345	 36.63	0	433193..434617	-	474	94986790	htrA	LI0346	-	trypsin domain/PDZ domain-containing protein
346	 36.15	0	434818..437232	-	804	94986791	flgE	LI0347	-	flagellar hook protein FlgE
347	 38.44	+1	437383..438891	-	502	94986792	flgE	LI0348	-	flagellar hook protein FlgE
348	 34.56	0	439256..440152	+	298	94986793	purC	LI0349	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
349	 32.94	0	440193..440957	+	254	94986794	fabI	LI0350	-	enoyl-[acyl-carrier-protein] reductase (NADH)
350	 36.14	0	441137..442456	+	439	94986795	mdh	LI0351	-	malate dehydrogenase
351	 31.45	0	442654..442971	+	105	94986796	rpsF	LI0352	-	30S ribosomal protein S6
352	 37.16	0	443247..443768	+	173	94986797	rplI	LI0353	-	50S ribosomal protein L9
353	 36.12	0	443830..445194	+	454	94986798	recQ	LI0354	-	replicative DNA helicase
354	 32.83	0	445449..446039	-	196	94986799	-	LI0355	-	rRNA methylases
355	 34.83	0	446089..448086	-	665	94986800	-	LI0356	-	ABC transporter ATPase
356	 35.75	0	448090..448959	-	289	94986801	pcm	LI0357	-	protein-L-isoaspartate carboxylmethyltransferase
357	 30.35	-1	449124..451136	+	670	94986802	-	LI0358	-	asmA protein
358	 35.30	0	451158..452531	-	457	94986803	mgtE	LI0359	-	Mg2+/Co2+ transporter
359	 33.78	0	452761..453651	+	296	94986804	nadC	LI0360	-	nicotinate-nucleotide pyrophosphorylase
360	 34.28	0	453648..454703	+	351	94986805	-	LI0361	-	quinolinate synthetase
361	 34.91	0	454752..456335	+	527	94986806	nadB	LI0362	-	aspartate oxidase
362	 29.74	-1	456390..456695	-	101	94986807	-	LI0363	-	integral membrane protein
363	 30.52	-1	456801..457475	-	224	94986808	gph	LI0364	-	phosphatases
364	 32.92	0	457964..458686	-	240	94986809	-	LI0365	-	DNA uptake lipoprotein
365	 36.35	0	458692..459618	-	308	94986810	trxB	LI0366	-	thioredoxin reductase
366	 35.19	0	459615..459938	-	107	94986811	trxA	LI0367	-	Thiol-disulfide isomerase and thioredoxins
367	 35.96	0	460064..461131	-	355	94986812	ygjD	LI0368	-	metal-dependent proteases with chaperone activity
368	 36.90	0	461235..462242	-	335	94986813	fbp	LI0369	-	fructose-1,6-bisphosphatase
369	 33.22	0	462356..463225	-	289	94986814	-	LI0370	-	hypothetical protein
370	 35.26	0	463255..464136	-	293	94986815	-	LI0371	-	hypothetical protein
371	 26.92	-2	464159..464470	-	103	94986816	-	LI0372	-	hypothetical protein
372	 29.77	-1	464482..465042	-	186	94986817	pgsA	LI0373	-	phosphatidylglycerophosphate synthase
34.48	MEAN

3.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.