IslandPathversion 1.0

IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.48 STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
237	 31.18	-1	296154..297827	-	557	94986682	cca	LI0238	-	polyA polymerase family protein
238	 32.90	0	297994..298914	-	306	94986683	-	LI0239	-	site-specific recombinase
239	 31.34	-1	299096..299647	+	183	94986684	folk	LI0240	-	7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase
240	 34.47	0	300171..302201	+	676	94986685	uvrB	LI0241	-	excinuclease ABC subunit B
241	 33.38	0	302221..304269	+	682	94986686	lig	LI0242	-	NAD-dependent DNA ligase
242	 35.26	0	304286..305062	+	258	94986687	dapB	LI0243	-	dihydrodipicolinate reductase
243	 31.50	0	305063..306640	+	525	94986688	nadE	LI0244	-	NH(3)-dependent NAD(+) synthetase
244	 34.36	0	306735..307415	-	226	94986689	hypB	LI0245	-	hydrogenase accessory protein HypB
245	 31.37	-1	307426..307782	-	118	94986690	hypA	LI0246	-	zinc finger protein
246	 31.38	-1	308027..308794	+	255	94986691	-	LI0247	-	hypothetical protein
247	 30.57	-1	308869..309519	+	216	94986692	-	LI0248	-	hypothetical protein
248	 31.63	0	309567..311150	-	527	94986693	recN	LI0249	-	ATPase involved in DNA repair
249	 35.78	0	311205..312023	-	272	94986694	oppC	LI0250	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
250	 34.03	0	312032..313036	-	334	94986695	oppB	LI0251	-	ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
251	 31.99	0	313191..313712	-	173	94986696	-	LI0252	-	hypothetical protein
252	 32.52	0	313725..314339	-	204	94986697	-	LI0253	-	hypothetical protein
253	 34.22	0	314561..315688	+	375	94986698	-	LI0254	-	hypothetical protein
254	 27.66	-2	315691..316236	-	181	94986699	-	LI0255	-	hypothetical protein
255	 29.42	-1	316238..317029	-	263	94986700	-	LI0256	-	hypothetical protein
256	 34.99	0	317243..320752	+	1169	94986701	dnaE	LI0257	-	DNA polymerase III, alpha subunit
257	 36.22	0	320772..321152	+	126	94986702	-	LI0258	-	F0F1-type ATP synthase, subunit c
258	 36.55	0	321305..321553	-	82	94986703	-	LI0259	-	hypothetical protein
259	 33.38	0	321744..323993	+	749	94986704	ntrY	LI0260	-	Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
260	 37.51	0	324064..325572	-	502	94986705	gad	LI0261	-	glutamate decarboxylase isozyme
261	 36.49	0	325627..327084	-	485	94986706	-	LI0262	-	amino acid transporters
262	 28.93	-1	327353..328624	+	423	94986707	-	LI0263	-	putative amino acid-amine transport protein
263	 37.01	0	328991..330241	+	416	94986708	rho	LI0264	-	transcription termination factor Rho
264	 35.91	0	330371..331534	-	387	94986709	-	LI0265	-	cysteine sulfinate desulfinase/cysteine desulfurase
265	 34.64	0	331531..332373	-	280	94986710	iscU	LI0266	-	NifU homolog involved in Fe-S cluster formation
266	 31.44	0	333321..333689	-	122	94986711	-	LI0267	-	hypothetical protein
267	 38.07	+1	333806..334312	-	168	94986712	ruvC	LI0268	-	Holliday junction resolvasome, endonuclease subunit
268	 38.33	+1	334384..335124	-	246	94986713	yebC	LI0269	-	hypothetical protein
269	 31.51	0	335173..335775	-	200	94986714	ygcA	LI0270	-	23S rRNA methylase
270	 33.21	0	335866..337446	+	526	94986715	-	LI0271	-	hypothetical protein
271	 31.87	0	337458..338414	+	318	94986716	-	LI0272	-	hypothetical protein
272	 34.06	0	338687..339097	+	136	94986717	-	LI0273	-	desulfoferrodoxin
273	 34.00	0	339468..340676	+	402	94986718	-	LI0274	-	uncharacterized flavoproteins
274	 37.10	0	340816..342117	+	433	94986719	cyoB	LI0275	-	cytochrome bd-type quinol oxidase, subunit 1
275	 35.37	0	342150..343178	+	342	94986720	cyoA	LI0276	-	cytochrome bd-type quinol oxidase, subunit 2
276	 35.00	0	343350..343829	-	159	94986721	-	LI0277	-	hypothetical protein
277	 36.73	0	344241..347804	+	1187	94986722	porA	LI0278	-	pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
278	 34.89	0	347892..350012	+	706	94986723	pta	LI0279	-	phosphate acetyltransferase
279	 34.81	0	350112..351326	+	404	94986724	ackA	LI0280	-	acetate kinase
280	 33.66	0	351351..352262	-	303	94986725	miaA	LI0281	-	tRNA delta(2)-isopentenylpyrophosphate transferase
281	 30.25	-1	352309..352827	-	172	94986726	kdtB	LI0282	-	phosphopantetheine adenylyltransferase
282	 35.60	0	352803..353375	-	190	94986727	-	LI0283	-	N6-adenine-specific methylase
283	 32.02	0	353516..355117	-	533	94986728	-	LI0284	-	RNA processing exonuclease
284	 34.21	0	355243..356610	-	455	94986729	-	LI0285	-	cell wall-associated hydrolases (invasion-associated proteins)
285	 34.23	0	356715..358055	-	446	94986730	-	LI0286	-	cell wall-associated hydrolases (invasion-associated proteins)
286	 33.38	0	358069..360267	-	732	94986731	recD	LI0287	-	exonuclease V subunit alpha
287	 33.81	0	361133..362386	+	417	94986732	-	LI0288	-	PAP2 superfamily protein
288	 35.48	0	362504..363340	-	278	94986733	-	LI0289	-	Pirin-related protein
289	 30.37	-1	363544..364893	-	449	94986734	-	LI0290	-	hypothetical protein
290	 33.14	0	365970..367550	-	526	94986735	-	LI0291	-	hypothetical protein
291	 31.08	-1	367971..368636	+	221	94986736	-	LI0292	-	Svh
292	 36.51	0	369577..370143	-	188	94986737	fumB	LI0293	-	fumarate hydratase
293	 36.52	0	370169..371014	-	281	94986738	fumA	LI0294	-	fumarate hydratase
294	 34.16	0	371279..371884	-	201	94986739	-	LI0295	-	hypothetical protein
295	 33.52	0	372325..373374	-	349	94986740	purM	LI0296	-	phosphoribosylaminoimidazole synthetase
296	 29.10	-1	373444..373821	+	125	94986741	-	LI0297	-	hypothetical protein
297	 28.84	-1	373843..374799	+	318	94986742	-	LI0298	-	hypothetical protein
298	 33.81	0	375220..377307	-	695	94986743	glyS	LI0299	-	glycyl-tRNA synthetase, beta subunit
299	 36.61	0	377313..378197	-	294	94986744	glyQ	LI0300	-	glycyl-tRNA synthetase subunit alpha
300	 32.00	0	378253..379002	-	249	94986745	recO	LI0301	-	hypothetical protein
301	 31.27	-1	379007..380026	-	339	94986746	-	LI0302	-	hypothetical protein
302	 31.93	0	380045..380971	-	308	94986747	ppi	LI0303	-	parvulin-like peptidyl-prolyl isomerase
303	 32.46	0	381141..382058	-	305	94986748	-	LI0304	-	parvulin-like peptidyl-prolyl isomerase
304	 36.07	0	382096..385563	-	1155	94986749	-	LI0305	-	transcription-repair coupling factor
305	 31.12	-1	385645..387228	-	527	94986750	-	LI0306	-	integral membrane protein
306	 36.29	0	387513..387986	+	157	94986751	greA	LI0307	-	transcription elongation factor greA
307	 35.24	0	388048..389358	+	436	94986752	-	LI0308	-	2-methylthioadenine synthetase
308	 34.47	0	389463..390344	+	293	94986753	yicC	LI0309	-	hypothetical protein
309	 35.99	0	390597..391235	+	212	94986754	gmk	LI0310	-	guanylate kinase
310	 35.65	0	391242..391931	+	229	94986755	pyrF	LI0311	-	orotidine-5'-phosphate decarboxylase
311	 32.60	0	392001..392819	+	272	94986756	-	LI0312	-	TPR repeat-containing protein
312	 36.03	0	392879..394585	+	568	94986757	recJ	LI0313	-	single-stranded DNA-specific exonuclease
313	 35.78	0	394647..395873	-	408	94986758	pepP	LI0314	-	Xaa-Pro aminopeptidase
314	 35.73	0	396014..396430	+	138	94986759	-	LI0315	-	CoA-binding protein
315	 30.26	-1	396615..397526	+	303	94986760	-	LI0316	-	DnaJ-class molecular chaperone
316	 33.33	0	397583..398272	+	229	94986761	-	LI0317	-	adenylate kinase-like kinase
317	 33.02	0	398358..399626	-	422	94986762	-	LI0318	-	hypothetical protein
318	 36.28	0	399629..400849	-	406	94986763	-	LI0319	-	ADP-heptose:LPS heptosyltransferase
319	 30.68	-1	401285..401962	+	225	94986764	cysG	LI0320	-	siroheme synthase
320	 33.45	0	401949..402839	+	296	94986765	resC	LI0321	-	ABC-type transport system involved in cytochrome c biogenesis, permease component
321	 34.68	0	402814..404079	+	421	94986766	hemA	LI0322	-	glutamyl-tRNA reductase
322	 35.17	0	404208..405515	+	435	94986767	-	LI0323	-	Signal renition particle GTPase
323	 36.24	0	405585..406238	+	217	94986768	thiE	LI0324	-	thiamine monophosphate synthase
324	 37.18	0	406369..407796	-	475	94986769	gltD	LI0325	-	NADPH-dependent glutamate synthase beta chain and related oxidoreductases
325	 32.25	0	408049..408975	+	308	94986770	-	LI0326	-	SAM-dependent methyltransferase
326	 29.56	-1	409616..410542	-	308	94986771	-	LI0327	-	hypothetical protein
327	 33.78	0	410586..411035	-	149	94986772	-	LI0328	-	hypothetical protein
328	 35.08	0	411409..413466	+	685	94986773	glgX	LI0329	-	Glyen debranching enzyme
329	 34.90	0	413485..414825	+	446	94986774	-	LI0330	-	putative glycosyltransferase
330	 33.95	0	414828..416114	+	428	94986775	amyA	LI0331	-	alpha-amylase
331	 36.05	0	416124..420386	+	1420	94986776	glgP	LI0332	-	carbohydrate phosphorylase family protein
332	 33.33	0	420460..421350	-	296	94986777	argB	LI0333	-	acetylglutamate kinase
333	 36.41	0	421371..422672	-	433	94986778	hslU	LI0334	-	ATP-dependent protease ATP-binding subunit
334	 35.31	0	422757..423464	-	235	94986779	livF	LI0335	-	branched chain amino acid ABC transporter, ATP-binding protein
335	 35.04	0	423517..424278	-	253	94986780	livG	LI0336	-	branched chain amino acid ABC transporter, ATP-binding protein
336	 33.74	0	424288..425274	-	328	94986781	livM	LI0337	-	branched chain amino acid ABC transporter, permease protein
34.48	MEAN

3.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.