IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.48   STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
138	 27.13	-2	171157..171543	-	128	94986583	-	LI0138	-	hypothetical protein
139	 25.67	-2	171577..172059	-	160	94986584	-	LI0139	-	hypothetical protein
140	 29.59	-1	172266..173522	-	418	94986585	-	LI0140	-	glycosyltransferase
141	 34.58	0	173721..174680	+	319	94986586	nodB	LI0141	-	xylanase/chitin deacetylase
142	 32.77	0	178242..179129	+	295	94986587	-	LI0142	-	hypothetical protein
143	 30.35	-1	180054..180455	-	133	94986588	-	LI0143	-	hypothetical protein
144	 30.45	-1	180718..181446	-	242	94986589	-	LI0144	-	SAM-dependent methyltransferases
145	 34.69	0	182088..183926	+	612	94986590	typA/bipA	LI0145	-	GTP-binding protein lepA
146	 33.61	0	183980..185080	-	366	94986591	-	LI0146	-	translation-associated GTPase
147	 38.78	+1	185352..185810	+	152	94986592	-	LI0147	-	Outer membrane lipoprotein
148	 37.02	0	185906..188398	-	830	94986593	lon	LI0148	-	ATP-dependent protease
149	 35.24	0	188436..189116	-	226	94986594	radC	LI0149	-	DNA repair proteins
150	 32.21	0	189211..190188	-	325	94986595	-	LI0150	-	hypothetical protein
151	 33.33	0	190209..190736	-	175	94986596	-	LI0151	-	hypothetical protein
152	 33.33	0	190747..193254	-	835	94986597	leuS	LI0152	-	leucyl-tRNA synthetase
153	 30.25	-1	193265..193750	-	161	94986598	nusB	LI0153	-	transcription termination factor
154	 36.29	0	193760..194233	-	157	94986599	ribH	LI0154	-	riboflavin synthase beta-chain
155	 36.33	0	194320..195588	-	422	94986600	ribA	LI0155	-	GTP cyclohydrolase II
156	 29.73	-1	195573..196238	-	221	94986601	ribE	LI0156	-	riboflavin synthase subunit alpha
157	 33.25	0	196242..197390	-	382	94986602	ribD	LI0157	-	pyrimidine reductase, riboflavin biosynthesis
158	 35.75	0	197926..199164	-	412	94986603	glyA	LI0159	-	serine hydroxymethyltransferase
159	 35.65	0	199233..200483	-	416	94986604	fabF/fabB	LI0160	-	3-oxoacyl-(acyl-carrier-protein) synthase
160	 35.08	0	200903..201646	-	247	94986605	fabG	LI0161	-	3-oxoacyl-[acyl-carrier protein] reductase
161	 33.73	0	201755..202759	-	334	94986606	fabH	LI0162	-	3-oxoacyl-[acyl-carrier-protein] synthase III
162	 33.91	0	202841..203884	-	347	94986607	plsX	LI0163	-	putative glycerol-3-phosphate acyltransferase PlsX
163	 31.28	-1	204107..204643	-	178	94986608	-	LI0164	-	metal-binding protein
164	 34.07	0	204755..205846	-	363	94986609	mutY	LI0165	-	A/G-specific DNA glycosylase
165	 28.99	-1	205977..206483	+	168	94986610	ppiB	LI0166	-	peptidyl-prolyl cis-trans isomerase
166	 28.57	-1	206826..207434	-	202	94986611	-	LI0167	-	peptidyl-prolyl cis-trans isomerase
167	 34.67	0	207522..210743	-	1073	94986612	-	LI0168	-	SNF2 family DNA/RNA helicase
168	 34.08	0	211599..213256	+	551	94986613	oppA	LI0169	-	ABC-type dipeptide transport system, periplasmic component
169	 34.88	0	213386..215581	+	731	94986614	relA	LI0170	-	guanosine polyphosphate pyrophosphohydrolases/synthetases
170	 33.33	0	215599..216006	-	135	94986615	-	LI0171	-	hypothetical protein
171	 33.33	0	216601..217899	-	432	94986616	-	LI0172	-	hypothetical protein
172	 38.05	+1	218703..219869	+	388	94986617	-	LI0173	-	prophage DLP12 integrase
173	 29.18	-1	219859..220869	+	336	94986618	-	LI0174	-	hypothetical protein
174	 48.89	+2	221210..222874	+	554	94986619	-	LI0175	-	hyphotheical protein
175	 54.71	+2	222965..223357	+	130	94986620	-	LI0176	-	hypothetical protein
176	 36.08	0	223987..224532	+	181	94986621	-	LI0177	-	hypothetical protein
177	 44.24	+2	224690..225184	+	164	94986622	-	LI0178	-	hypothetical protein
178	 50.73	+2	225939..227858	-	639	94986623	tetW	LI0179	-	ribosomal protection tetracycline resistance protein
179	 55.30	+2	228343..229257	+	304	94986624	-	LI0180	-	hypothetical protein
180	 37.79	+1	229471..230256	+	261	94986625	-	LI0181	-	endonuclease I
181	 45.64	+2	230232..231092	+	286	94986626	-	LI0182	-	putative recombination protein-phage associated
182	 49.04	+2	231161..232363	+	400	94986627	-	LI0183	-	hypothetical protein
183	 50.13	+2	232347..232721	+	124	94986628	-	LI0184	-	hypothetical protein
184	 52.37	+2	232791..233741	+	316	94986629	-	LI0185	-	MoxR-like ATPases
185	 51.81	+2	233745..234740	+	331	94986630	-	LI0186	-	hypothetical protein
186	 51.10	+2	234755..236347	+	530	94986631	-	LI0187	-	hypothetical protein
187	 37.68	+1	236969..238876	+	635	94986632	ftsH	LI0188	-	ATP-dependent Zn proteases
188	 31.87	0	238888..239775	+	295	94986633	folP	LI0189	-	dihydropteroate synthase
189	 34.95	0	239839..240579	+	246	94986634	-	LI0190	-	hypothetical protein
190	 34.58	0	240772..241494	+	240	94986635	-	LI0191	-	hypothetical protein
191	 36.14	0	241522..242877	+	451	94986636	-	LI0192	-	phosphomannomutase
192	 34.53	0	242878..243798	+	306	94986637	galU	LI0193	-	UDP-glucose pyrophosphorylase
193	 32.41	0	243833..246211	+	792	94986638	priA	LI0194	-	primosomal protein N'
194	 30.86	-1	247238..247885	+	215	94986639	-	LI0195	-	SAM-dependent methyltransferases
195	 33.71	0	247882..249495	+	537	94986640	-	LI0196	-	putative transport protein
196	 29.52	-1	249535..250242	-	235	94986641	-	LI0197	-	endo-1,4-beta-xylanase
197	 31.16	-1	250367..250963	-	198	94986642	-	LI0198	-	hypothetical protein
198	 32.49	0	250984..253005	-	673	94986643	-	LI0199	-	exoribonuclease R
199	 35.45	0	253065..254339	-	424	94986644	purH	LI0200	-	AICAR transformylase/IMP cyclohydrolase PurH
200	 31.17	-1	254566..254889	+	107	94986645	-	LI0201	-	hypothetical protein
201	 33.49	0	255142..256428	+	428	94986646	purA	LI0202	-	adenylosuccinate synthetase
202	 36.07	0	256593..257651	+	352	94986647	trmU	LI0203	-	tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase
203	 36.46	0	257733..258917	+	394	94986648	-	LI0204	-	Fe-S oxidoreductases
204	 36.14	0	259031..260029	+	332	94986649	hemB	LI0205	-	delta-aminolevulinic acid dehydratase
205	 38.74	+1	260014..261327	+	437	94986650	-	LI0206	-	Fe-S oxidoreductases
206	 32.67	0	261332..261784	+	150	94986651	nirD	LI0207	-	transcriptional regulators
207	 32.12	0	261947..262936	+	329	94986652	-	LI0208	-	hypothetical protein
208	 31.38	-1	263206..263820	+	204	94986653	-	LI0209	-	hypothetical protein
209	 35.25	0	264303..264875	-	190	94986654	fliS	LI0210	-	flagellin-specific chaperone FliS
210	 34.34	0	264907..266991	-	694	94986655	fliD	LI0211	-	flagellar capping protein
211	 32.97	0	267658..269586	+	642	94986656	thrS	LI0212	-	threonyl-tRNA synthetase
212	 36.90	0	269654..270130	+	158	94986657	infC	LI0213	-	translation initiation factor IF-3
213	 37.29	0	270500..270853	+	117	94986658	rplT	LI0214	-	50S ribosomal protein L20
214	 34.49	0	270937..271974	+	345	94986659	pheS	LI0215	-	phenylalanyl-tRNA synthetase alpha subunit
215	 30.72	-1	272014..274425	+	803	94986660	pheT	LI0216	-	phenylalanyl-tRNA synthetase beta subunit
216	 30.22	-1	274466..274882	+	138	94986661	-	LI0217	-	transcriptional regulator
217	 33.12	0	275097..275564	+	155	94986662	rpe	LI0218	-	Pentose-5-phosphate-3-epimerase
218	 35.47	0	275627..277594	+	655	94986663	tkt	LI0219	-	transketolase
219	 33.42	0	277821..278945	+	374	94986664	trmD	LI0220	-	tRNA-(guanine-N1)-methyltransferase
220	 36.21	0	278981..279328	+	115	94986665	rplS	LI0221	-	50S ribosomal protein L19
221	 34.52	0	279395..280069	+	224	94986666	rplS	LI0222	-	ribonuclease HII
222	 31.33	-1	280089..280487	+	132	94986667	-	LI0223	-	endonuclease
223	 32.85	0	280429..281259	+	276	94986668	-	LI0224	-	methyltransferases
224	 32.69	0	281262..281729	+	155	94986669	smpB	LI0225	-	SsrA-binding protein
225	 35.71	0	281750..283432	+	560	94986670	yjjK	LI0226	-	putative ABC transporter ATP-binding protein
226	 34.53	0	283562..284482	-	306	94986671	fabD	LI0227	-	(acyl-carrier-protein) S-malonyltransferase
227	 37.96	+1	284607..285644	-	345	94986672	glpX	LI0228	-	fructose 1,6-bisphosphatase II
228	 32.61	0	285821..287473	+	550	94986673	argS	LI0229	-	arginyl-tRNA synthetase
229	 30.12	-1	287480..288256	+	258	94986674	-	LI0230	-	hypothetical protein
230	 33.21	0	288273..289073	+	266	94986675	-	LI0231	-	ABC-type transport system involved in resistance to organic solvents, permease component
231	 36.22	0	289086..289916	+	276	94986676	-	LI0232	-	ABC-type transport system involved in resistance to organic solvents, ATPase component
232	 32.66	0	289932..290375	+	147	94986677	-	LI0233	-	ABC-type transport system involved in resistance to organic solvents, periplasmic component
233	 29.65	-1	290380..291030	+	216	94986678	-	LI0234	-	ABC-type transport system involved in resistance to organic solvents, auxiliary component
234	 32.11	0	291031..291927	+	298	94986679	-	LI0235	-	surface lipoprotein
235	 34.19	0	292398..295079	-	893	94986680	mutS	LI0236	-	DNA mismatch repair protein
236	 32.14	0	295534..296034	-	166	94986681	-	LI0237	-	diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases
237	 31.18	-1	296154..297827	-	557	94986682	cca	LI0238	-	polyA polymerase family protein
34.48	MEAN

3.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.