IslandPathversion 1.0

IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 34.48 STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1061	 36.90	0	1307072..1307548	+	158	94987506	fdhF	LI1064	-	Fe-S-cluster-containing hydrogenase components 1
1062	 35.39	0	1307621..1308496	-	291	94987507	rfbD	LI1065	-	dTDP-4-dehydrorhamnose reductase
1063	 34.90	0	1308493..1309512	-	339	94987508	rfbB	LI1066	-	dTDP-D-glucose 4,6-dehydratase
1064	 31.44	0	1309801..1310592	+	263	94987509	-	LI1067	-	cobalamin biosynthesis protein CbiK, Co2+ chelatase
1065	 32.82	0	1310656..1311624	+	322	94987510	-	LI1068	-	hypothetical protein
1066	 30.00	-1	1312240..1312479	+	79	94987511	rnpA	LI1069	-	RNase P protein component
1067	 34.96	0	1312833..1314431	+	532	94987512	yidC	LI1070	-	preprotein translocase subunit YidC
1068	 33.04	0	1314455..1315468	+	337	94987513	jag	LI1071	-	RNA-binding protein
1069	 35.22	0	1315534..1316913	+	459	94987514	trmE	LI1072	-	tRNA modification GTPase TrmE
1070	 34.67	0	1316917..1317513	+	198	94987515	rncS	LI1073	-	ribonuclease D
1071	 32.76	0	1317595..1320534	+	979	94987516	-	LI1074	-	endonuclease
1072	 38.20	+1	1320591..1321721	+	376	94987517	ncd2	LI1075	-	dioxygenases related to 2-nitropropane dioxygenase
1073	 33.03	0	1321808..1322791	-	327	94987518	glk	LI1076	-	glucokinase
1074	 33.46	0	1322933..1323712	-	259	94987519	-	LI1077	-	hypothetical protein
1075	 30.75	-1	1324889..1326631	+	580	94987520	HydH	LI1078	-	Signal transduction histidine kinase
1076	 35.88	0	1326651..1328066	+	471	94987521	hydG	LI1079	-	response regulator
1077	 36.21	0	1328199..1328615	+	138	94987522	-	LI1080	-	hypothetical protein
1078	 36.38	0	1328645..1329628	-	327	94987523	oppD	LI1081	-	oligopeptide ABC transporter
1079	 40.41	+1	1330153..1330491	+	112	94987524	feoA	LI1082	-	Fe2+ transport system protein A
1080	 35.97	0	1330619..1332820	+	733	94987525	feoB	LI1083	-	Fe2+ transport system protein B
1081	 33.17	0	1332824..1334038	-	404	94987526	glpC	LI1084	-	sn-glycerol-3-phosphate dehydrogenase subunit C
1082	 32.93	0	1334050..1335303	-	417	94987527	-	LI1085	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
1083	 34.68	0	1335296..1336924	-	542	94987528	glpA	LI1086	-	anaerobic glycerol-3-phosphate dehydrogenase subunit A
1084	 35.51	0	1337223..1337819	-	198	94987529	-	LI1087	-	hypothetical protein
1085	 30.10	-1	1337816..1338124	-	102	94987530	-	LI1088	-	hypothetical protein
1086	 33.03	0	1338433..1339086	+	217	94987531	-	LI1089	-	methyltransferase
1087	 35.24	0	1339149..1339568	+	139	94987532	-	LI1090	-	transcription regulator
1088	 33.85	0	1339592..1340368	+	258	94987533	-	LI1091	-	putative GTP cyclohydrolase
1089	 37.05	0	1340557..1341606	+	349	94987534	-	LI1092	-	response regulator
1090	 35.28	0	1341663..1344893	+	1076	94987535	-	LI1093	-	Outer membrane protein and related peptidoglycan-associated (lipo)proteins
1091	 34.20	0	1344921..1345964	-	347	94987536	-	LI1094	-	HD-GYP domain-containing protein
1092	 36.09	0	1345968..1347383	-	471	94987537	pykF	LI1095	-	pyruvate kinase
1093	 35.56	0	1347589..1348038	+	149	94987538	mraZ	LI1096	-	cell division protein MraZ
1094	 36.10	0	1348109..1349047	+	312	94987539	-	LI1097	-	S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis
1095	 34.20	0	1349553..1351634	+	693	94987540	ftsI	LI1098	-	cell division protein FtsI/penicillin-binding protein 2
1096	 35.68	0	1351636..1353084	+	482	94987541	murE	LI1099	-	UDP-N-acetylmuramyl tripeptide synthase
1097	 35.27	0	1353075..1354469	+	464	94987542	murF	LI1100	-	UDP-N-acetylmuramyl pentapeptide synthase
1098	 31.85	0	1354469..1355545	+	358	94987543	mraY	LI1101	-	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
1099	 34.32	0	1355559..1356881	+	440	94987544	murD	LI1102	-	UDP-N-acetylmuramoylalanine-D-glutamate ligase
1100	 34.55	0	1356868..1358016	+	382	94987545	spoVE	LI1103	-	cell division membrane protein
1101	 35.81	0	1358021..1359112	+	363	94987546	murG	LI1104	-	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase
1102	 35.76	0	1359109..1360470	+	453	94987547	murC	LI1105	-	UDP-N-acetylmuramate-alanine ligase
1103	 33.22	0	1360502..1361392	+	296	94987548	-	LI1106	-	UDP-N-acetylmuramate dehydrogenase
1104	 29.71	-1	1361386..1362213	+	275	94987549	ftsQ	LI1107	-	cell division septal protein
1105	 38.69	+1	1362407..1363639	+	410	94987550	ftsA	LI1108	-	cell division protein FtsA
1106	 38.97	+1	1363691..1365073	+	460	94987551	ftsZ	LI1109	-	cell division protein FtsZ
1107	 32.08	0	1365182..1365661	+	159	94987552	-	LI1110	-	hypothetical protein
1108	 32.18	0	1365658..1366440	-	260	94987553	-	LI1111	-	amidophosphoribosyltransferases
1109	 33.17	0	1366446..1367042	-	198	94987554	-	LI1112	-	multimeric flavodoxin WrbA
1110	 34.33	0	1367118..1368020	-	300	94987555	argF	LI1113	-	ornithine carbamoyltransferase
1111	 33.02	0	1368164..1370053	-	629	94987556	-	LI1114	-	parvulin-like peptidyl-prolyl isomerase
1112	 37.66	+1	1370349..1371827	-	492	94987557	flbD	LI1115	-	response regulator
1113	 35.94	0	1372257..1373870	+	537	94987558	priS	LI1116	-	hydroxylamine reductase
1114	 34.27	0	1374180..1375139	+	319	94987559	cheV	LI1117	-	chemotaxis signal transduction protein
1115	 34.32	0	1375188..1375997	+	269	94987560	-	LI1118	-	hypothetical protein
1116	 33.92	0	1376132..1377148	-	338	94987561	gapB	LI1119	-	glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase
1117	 37.40	0	1377471..1378307	-	278	94987562	proC	LI1120	-	pyrroline-5-carboxylate reductase
1118	 32.85	0	1378307..1378723	-	138	94987563	ndk	LI1121	-	nucleoside-diphosphate kinase
1119	 32.21	0	1378753..1380090	-	445	94987564	-	LI1122	-	hypothetical protein
1120	 36.57	0	1380396..1381724	-	442	94987565	prc	LI1123	-	periplasmic protease
1121	 32.89	0	1381792..1382472	-	226	94987566	nth	LI1124	-	endonuclease III, putative
1122	 35.71	0	1382916..1385270	-	784	94987567	copA	LI1125	-	copper-translocating P-type ATPase
1123	 35.50	0	1385472..1385933	+	153	94987568	-	LI1126	-	RNA methyltransferase
1124	 36.77	0	1385991..1387358	+	455	94987569	-	LI1127	-	Na+-driven multidrug efflux pump
1125	 33.67	0	1387436..1388335	+	299	94987570	-	LI1128	-	hypothetical protein
1126	 35.91	0	1388490..1389227	+	245	94987571	glnQ	LI1129	-	ABC-type polar amino acid transport system, ATPase component
1127	 33.33	0	1389244..1390113	+	289	94987572	-	LI1130	-	ribosomal protein L11 methylase
1128	 33.92	0	1390148..1390486	-	112	94987573	secG	LI1131	-	preprotein translocase subunit SecG
1129	 34.39	0	1390582..1391340	-	252	94987574	tpiA	LI1132	-	triosephosphate isomerase
1130	 29.72	-1	1391360..1391830	-	156	94987575	rimJ	LI1133	-	acetyltransferase
1131	 33.15	0	1391831..1392370	+	179	94987576	-	LI1134	-	NTP pyrophosphohydrolases including oxidative damage repair enzymes
1132	 35.73	0	1392420..1393421	-	333	94987577	mreB	LI1135	-	Actin-like ATPase involved in cell morphogenesis
1133	 36.33	0	1393424..1394458	-	344	94987578	-	LI1136	-	hypothetical protein
1134	 37.15	0	1394777..1395850	+	357	94987579	cheB	LI1137	-	chemotaxis response regulator
1135	 33.74	0	1395874..1397826	+	650	94987580	-	LI1138	-	hypothetical protein
1136	 31.96	0	1397826..1398701	+	291	94987581	cheR	LI1139	-	methylase of chemotaxis methyl-accepting proteins
1137	 32.04	0	1398717..1399487	+	256	94987582	soj	LI1140	-	ATPases involved in chromosome partitioning
1138	 32.27	0	1399691..1400161	+	156	94987583	cheW	LI1141	-	chemotaxis signal transduction protein
1139	 31.71	0	1400172..1400540	+	122	94987584	cheY	LI1142	-	CheY-like receiver
1140	 34.57	0	1400564..1401208	+	214	94987585	cheA_1	LI1143	-	chemotaxis protein histidine kinase-like kinase
1141	 36.36	0	1401396..1403609	+	737	94987586	cheA_2	LI1144	-	chemotaxis protein histidine kinase-like kinase
1142	 32.44	0	1409027..1411030	-	667	94987592	-	LI1150	-	putative regulator
1143	 33.41	0	1411391..1412671	-	426	94987593	-	LI1151	-	transcriptional regulator
1144	 35.50	0	1412680..1413048	-	122	94987594	-	LI1152	-	hypothetical protein
1145	 36.01	0	1413348..1414544	-	398	94987595	-	LI1153	-	putative outer protein N
1146	 36.97	0	1415356..1416042	+	228	94987596	-	LI1154	-	hypothetical protein
1147	 39.59	+1	1416504..1417094	+	196	94987597	-	LI1155	-	hypothetical protein
1148	 36.49	0	1418018..1418524	+	168	94987598	-	LI1156	-	hypothetical protein
1149	 42.59	+2	1419132..1419671	+	179	94987599	-	LI1157	-	regulatory protein PcrH
1150	 40.30	+1	1419668..1420858	+	396	94987600	-	LI1158	-	hypothetical protein
1151	 38.85	+1	1420906..1421703	+	265	94987601	-	LI1159	-	hypothetical protein
1152	 35.22	0	1422992..1424743	+	583	94987602	YscC	LI1160	-	putative type III secretion protein YscC
1153	 35.30	0	1424743..1426164	+	473	94987603	-	LI1161	-	hypothetical protein
1154	 38.12	+1	1426377..1426856	+	159	94987604	-	LI1162	-	hypothetical protein
1155	 34.65	0	1426865..1427701	+	278	94987605	YscJ	LI1163	-	putative type III secretion protein
1156	 28.34	-2	1427698..1428378	+	226	94987606	YscL	LI1164	-	putative type III secretion protein
1157	 32.99	0	1428350..1429231	+	293	94987607	-	LI1165	-	hypothetical protein
1158	 36.22	0	1429285..1430391	+	368	94987608	-	LI1166	-	putative translocation protein in type III secretion
1159	 34.22	0	1430468..1430806	+	112	94987609	-	LI1167	-	anti-anti-sigma factor
1160	 34.91	0	1430820..1431263	+	147	94987610	rsbW	LI1168	-	sigma regulatory factor-histidine kinase
34.48	MEAN

3.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.