IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.48   STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 34.86	0	358..1794	+	478	94986446	dnaA	LI0001	-	ATPase involved in DNA replication initiation
2	 35.00	0	1827..2906	-	359	94986447	prfA	LI0002	-	peptide chain release factor 1
3	 29.52	-1	3122..3436	+	104	94986448	-	LI0003	-	hypothetical protein
4	 31.88	0	3454..4209	+	251	94986449	hly	LI0004	-	hemolysin A
5	 37.75	+1	4337..4879	-	180	94986450	sodC	LI0005	-	superoxide dismutase precursor (Cu-Zn)
6	 18.89	-2	4945..5214	+	89	94986451	-	LI0006	-	hypothetical protein
7	 32.71	0	5549..7147	+	532	94986452	tlc	LI0007	-	nucleotide transport protein
8	 26.67	-2	7665..7904	-	79	94986453	-	LI0008	-	hypothetical protein
9	 29.25	-1	8001..8735	-	244	94986454	-	LI0009	-	hypothetical protein
10	 29.41	-1	8623..8928	-	101	94986455	-	LI0010	-	hypothetical protein
11	 33.12	0	9617..10576	-	319	94986456	polB	LI0011	-	DNA polymerase I
12	 33.14	0	10536..13571	-	1011	94986457	-	LI0012	-	hypothetical protein
13	 31.45	0	14779..15576	-	265	94986458	-	LI0013	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
14	 35.60	0	15573..16805	-	410	94986459	-	LI0014	-	recombination factor protein RarA
15	 33.33	0	16842..17369	-	175	94986460	upp	LI0015	-	pyrimidine operon attenuation protein/uracil phosphoribosyltransferase
16	 34.99	0	17612..18394	+	260	94986461	-	LI0016	-	hypothetical protein
17	 37.19	0	18406..19131	-	241	94986462	ubiE	LI0017	-	methylase involved in ubiquinone/menaquinone biosynthesis
18	 36.24	0	19389..20660	-	423	94986463	gltP	LI0018	-	proton/sodium-glutamate symport protein
19	 30.00	-1	20974..21483	-	169	94986464	tagD	LI0019	-	glycerol-3-phosphate cytidyltransferase
20	 36.51	0	21519..22526	-	335	94986465	trpS	LI0020	-	tryptophanyl-tRNA synthetase
21	 35.70	0	22529..23203	-	224	94986466	-	LI0021	-	Zn-dependent proteases
22	 33.92	0	23206..24402	-	398	94986467	tyrS	LI0022	-	tyrosyl-tRNA synthetase
23	 32.18	0	24563..25084	-	173	94986468	ogt	LI0023	-	O-6-alkylguanine-DNA/cysteine-protein methyltransferase
24	 36.02	0	25145..26224	-	359	94986469	gcpE	LI0024	-	enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis
25	 36.32	0	26307..29891	-	1194	94986470	ppsA	LI0025	-	phosphoenolpyruvate synthase/pyruvate phosphate dikinase
26	 31.71	0	30148..31131	-	327	94986471	birA	LI0026	-	biotin-(acetyl-CoA carboxylase) ligase
27	 34.87	0	31207..32184	-	325	94986472	fliM	LI0027	-	flagellar motor switch protein
28	 29.86	-1	32258..32746	+	162	94986473	-	LI0028	-	hypothetical protein
29	 36.19	0	32974..34476	-	500	94986474	-	LI0029	-	hypothetical protein
30	 35.38	0	34646..35818	-	390	94986475	-	LI0030	-	hypothetical protein
31	 32.68	0	35907..36365	-	152	94986476	-	LI0031	-	hypothetical protein
32	 33.41	0	36644..37960	-	438	94986477	-	LI0032	-	hypothetical protein
33	 32.63	0	38434..40854	-	806	94986478	ostA	LI0033	-	organic solvent tolerance protein OstA
34	 35.08	0	40989..42131	+	380	94986479	alr	LI0034	-	alanine racemase, catabolic
35	 31.79	0	42140..42592	-	150	94986480	fur	LI0035	-	Fe2+/Zn2+ uptake regulation proteins
36	 33.14	0	42906..43955	-	349	94986481	rfaF	LI0036	-	ADP-heptose:LPS heptosyltransferase II
37	 31.28	-1	44293..44535	-	80	94986482	-	LI0037	-	transcriptional regulator
38	 30.78	-1	44534..45043	+	169	94986483	-	LI0038	-	putative exported nuclease
39	 34.39	0	45343..45816	+	157	94986484	-	LI0039	-	hypothetical protein
40	 35.24	0	45849..47372	+	507	94986485	-	LI0040	-	hypothetical protein
41	 37.90	+1	47683..49611	+	642	94986486	-	LI0041	-	hypothetical protein
42	 35.65	0	49861..50334	+	157	94986487	-	LI0042	-	hypothetical protein
43	 43.43	+2	50406..53108	+	900	94986488	-	LI0043	-	hypothetical protein
44	 31.66	0	53869..55779	-	636	94986489	mdoB	LI0044	-	hypothetical protein
45	 34.77	0	56748..59387	+	879	94986490	-	LI0045	-	hypothetical protein
46	 33.84	0	60142..60534	+	130	94986491	-	LI0046	-	hypothetical protein
47	 32.70	0	61583..62695	-	370	94986492	secF	LI0047	-	preprotein translocase subunit SecF
48	 34.91	0	62698..64281	-	527	94986493	secD	LI0048	-	preprotein translocase subunit SecD
49	 33.04	0	64432..64770	-	112	94986494	yajC	LI0049	-	preprotein translocase subunit YajC
50	 30.82	-1	65816..69043	-	1075	94986495	-	LI0050	-	uncharacterized protein involved in outer membrane biogenesis
51	 31.46	0	69095..72304	-	1069	94986496	uvrD	LI0051	-	ATP-dependent exoDNAse beta subunit
52	 36.11	0	72270..73637	-	455	94986497	pfp	LI0052	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
53	 28.23	-2	74229..74561	+	110	94986498	-	LI0053	-	hypothetical protein
54	 32.53	0	74909..75781	-	290	94986499	-	LI0054	-	rRNA methylases
55	 33.39	0	75939..77606	+	555	94986500	mltD	LI0055	-	membrane-bound lytic murein transglycosylase D (MltD)
56	 35.05	0	77677..78435	-	252	94986501	-	LI0056	-	nitrate ABC transporter, permease protein (nrtB-1)
57	 32.40	0	78432..79178	-	248	94986502	-	LI0057	-	nitrate ABC transporter, ATP-binding protein (nrtC-1)
58	 35.53	0	79175..80086	-	303	94986503	-	LI0058	-	thiamine biosynthesis protein, putative
59	 34.90	0	80428..80937	+	169	94986504	-	LI0059	-	hypothetical protein
60	 37.48	0	81700..82470	+	256	94986505	glpR	LI0060	-	transcriptional regulators of sugar metabolism
61	 30.22	-1	82557..82877	-	106	94986506	-	LI0061	-	hypothetical protein
62	 31.17	-1	83393..84085	-	230	94986507	ybeN	LI0062	-	nicotinic acid mononucleotide adenylyltransferase
63	 30.10	-1	84629..85216	+	195	94986508	-	LI0063	-	hypothetical protein
64	 36.09	0	85844..86242	+	132	94986509	-	LI0064	-	transcriptional regulator
65	 26.80	-2	86420..87169	-	249	94986510	-	LI0065	-	Outer membrane lipoprotein-sorting protein
66	 35.31	0	87173..89860	-	895	94986511	ftsK	LI0066	-	DNA segregation ATPase FtsK/SpoIIIE and related proteins
67	 34.41	0	89937..90494	-	185	94986512	-	LI0067	-	translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)
68	 32.68	0	90801..91409	+	202	94986513	-	LI0068	-	GTPase EngB
69	 40.91	+2	92957..93616	+	219	94986514	-	LI0069	-	hypothetical protein
70	 34.98	0	93731..94156	+	141	94986515	-	LI0070	-	hypothetical protein
71	 39.16	+1	94285..94833	+	182	94986516	-	LI0071	-	hypothetical protein
72	 38.78	+1	94921..95379	+	152	94986517	-	LI0072	-	hypothetical protein
73	 36.90	0	95597..96073	+	158	94986518	-	LI0073	-	hypothetical protein
74	 28.61	-1	97539..97961	-	140	94986519	-	LI0074	-	rhodanese-related sulfurtransferase
75	 32.59	0	98193..98996	+	267	94986520	icc	LI0075	-	phosphodiesterase
76	 34.29	0	99014..100063	+	349	94986521	-	LI0076	-	sugar ABC transporter, ATP-binding protein
77	 34.72	0	100196..101491	+	431	94986522	ugpB	LI0077	-	extracellular solute-binding protein
78	 30.86	-1	101554..102441	+	295	94986523	ugpA	LI0078	-	inner membrane component of binding-protein-dependent transport system
79	 31.66	0	102438..103274	+	278	94986524	-	LI0079	-	inner membrane component of binding-protein-dependent transport system
80	 31.11	-1	103384..104913	-	509	94986525	-	LI0080	-	hypothetical protein
81	 34.50	0	105205..106146	+	313	94986526	-	LI0081	-	nucleoside-diphosphate sugar epimerase
82	 34.70	0	106189..107283	-	364	94986527	-	LI0082	-	hypothetical protein
83	 37.21	0	107298..108380	-	360	94986528	kpsF	LI0083	-	CBS domain-containing protein
84	 29.37	-1	110475..111206	-	243	94986529	-	LI0084	-	hypothetical protein
85	 38.81	+1	111603..112004	-	133	94986530	dnaK	LI0085	-	molecular chaperone dnaK
86	 32.74	0	112674..113177	-	167	94986531	-	LI0086	-	putative beta-D-galactosidase
87	 36.50	0	113180..114442	-	420	94986532	argD	LI0087	-	acetylornithine aminotransferase
88	 37.06	0	114414..114896	-	160	94986533	dut	LI0088	-	dUTPase
89	 35.29	0	115144..115653	+	169	94986534	folE	LI0089	-	7-cyano-7-deazaguanine reductase
90	 33.09	0	115673..116482	+	269	94986535	-	LI0090	-	pantothenate kinase
91	 37.25	0	116596..117897	+	433	94986536	eno	LI0091	-	enolase (2-phosphoglycerate dehydratase)
92	 34.39	0	117911..118954	-	347	94986537	rfaF/rfaQ	LI0092	-	ADP-heptose:LPS heptosyltransferase
93	 33.03	0	119487..120482	+	331	94986538	-	LI0093	-	hypothetical protein
94	 34.47	0	120488..121714	+	408	94986539	pfk	LI0094	-	fructose-2,6-bisphosphatase
95	 31.46	0	121739..123019	-	426	94986540	-	LI0095	-	CheY-like receiver
96	 27.86	-2	123089..123490	-	133	94986541	-	LI0096	-	hypothetical protein
97	 32.80	0	124343..125278	-	311	94986542	corA	LI0097	-	CorA, CorA-like Mg2+ transporter protein
98	 32.73	0	125579..126076	+	165	94986543	-	LI0098	-	hypothetical protein
99	 34.65	0	126080..127141	-	353	94986544	argC	LI0099	-	N-acetyl-gamma-glutamyl-phosphate reductase
100	 30.77	-1	127145..127495	-	116	94986545	-	LI0100	-	hypothetical protein
34.48	MEAN

3.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.