IslandPath Analysis: Lawsonia intracellularis PHE/MN1-00



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 34.48   STD DEV: 3.07
Lawsonia intracellularis PHE/MN1-00, complete genome - 1..1457619
1180 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
986	 35.16	0	1218216..1218980	+	254	94987431	-	LI0989	-	3-deoxy-manno-octulosonate cytidylyltransferase
987	 34.39	0	1218980..1220110	+	376	94987432	carA	LI0990	-	carbamoyl phosphate synthase small subunit
988	 34.18	0	1220290..1221117	+	275	94987433	-	LI0991	-	GluNAc transferase
989	 30.61	-1	1221162..1221821	-	219	94987434	-	LI0992	-	hypothetical protein
990	 35.79	0	1222274..1223455	+	393	94987435	acrA	LI0993	-	multidrug efflux membrane permease
991	 36.19	0	1223455..1226604	+	1049	94987436	acrB	LI0994	-	acriflavin resistance protein D
992	 36.96	0	1226608..1227987	+	459	94987437	oprM	LI0995	-	outer membrane efflux protein
993	 35.21	0	1228358..1228783	+	141	94987438	-	LI0996	-	hypothetical protein
994	 35.81	0	1228824..1230155	+	443	94987439	purB	LI0997	-	adenylosuccinate lyase
995	 35.99	0	1230186..1230749	+	187	94987440	pyrE	LI0998	-	orotate phosphoribosyltransferase
996	 34.44	0	1231102..1232007	+	301	94987441	-	LI0999	-	hypothetical protein
997	 35.47	0	1232004..1232939	+	311	94987442	-	LI1000	-	hypothetical protein
998	 37.53	0	1233552..1234028	+	158	94987443	napC	LI1001	-	cytochrome c nitrite reductase small subunit
999	 36.29	0	1234021..1235574	+	517	94987444	nrfA	LI1002	-	chain A, cytochrome C nitrite reductase
1000	 35.12	0	1235666..1236898	-	410	94987445	lysC	LI1003	-	aspartate kinase
1001	 32.50	0	1236903..1237505	-	200	94987446	-	LI1004	-	ATPase or kinase
1002	 37.90	+1	1237651..1238547	+	298	94987447	truB	LI1005	-	pseudouridine synthase
1003	 36.41	0	1239053..1241263	+	736	94987448	pnpA	LI1006	-	polynucleotide phosphorylase/polyadenylase
1004	 32.50	0	1241379..1242812	-	477	94987449	gatB	LI1007	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1005	 31.14	-1	1242831..1243469	-	212	94987450	-	LI1008	-	hypothetical protein
1006	 35.20	0	1244106..1244963	-	285	94987451	yfjB	LI1009	-	sugar kinase
1007	 37.26	0	1245221..1245856	+	211	94987452	gmhA	LI1010	-	phosphoheptose isomerase
1008	 36.02	0	1246200..1247129	+	309	94987453	hemC	LI1011	-	porphobilinogen deaminase
1009	 34.19	0	1247217..1249670	+	817	94987454	lon	LI1012	-	ATP-dependent protease
1010	 35.33	0	1249691..1250893	-	400	94987455	nar	LI1013	-	major facilitator superfamily permease
1011	 31.47	0	1251229..1251711	+	160	94987456	-	LI1014	-	hypothetical protein
1012	 36.86	0	1251726..1253258	+	510	94987457	gmpA	LI1015	-	phosphoglyceromutase
1013	 30.85	-1	1253603..1253965	-	120	94987458	-	LI1016	-	hypothetical protein
1014	 32.34	0	1253967..1254572	-	201	94987459	-	LI1017	-	hypothetical protein
1015	 34.40	0	1254631..1256223	-	530	94987460	rfaQ	LI1018	-	ADP-heptose:LPS heptosyltransferase
1016	 35.52	0	1256500..1257321	-	273	94987461	lpxA	LI1019	-	UDP-N-acetylglucosamine acyltransferase
1017	 34.63	0	1257321..1257782	-	153	94987462	fabZ	LI1020	-	(3R)-hydroxymyristoyl-(acyl-carrier-protein) dehydratase
1018	 34.41	0	1257792..1258817	-	341	94987463	lpxD	LI1021	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1019	 34.94	0	1258821..1259381	-	186	94987464	-	LI1022	-	Outer membrane protein
1020	 32.56	0	1259526..1261328	-	600	94987465	amiA	LI1023	-	N-acetylmuramoyl-L-alanine amidase
1021	 34.12	0	1261471..1264125	-	884	94987466	-	LI1024	-	Outer membrane protein/protective antigen OMA87
1022	 35.45	0	1264118..1264825	-	235	94987467	lolD	LI1025	-	ABC-type transport system, involved in lipoprotein release, permease component
1023	 34.81	0	1264828..1266111	-	427	94987468	lolC	LI1026	-	ABC-type transport system, involved in lipoprotein release, permease component
1024	 35.74	0	1266111..1267484	-	457	94987469	lysU	LI1027	-	lysyl-tRNA synthetase (class II)
1025	 33.58	0	1268376..1269200	+	274	94987470	-	LI1028	-	phosphate-binding protein
1026	 32.49	0	1269253..1270083	+	276	94987471	pstC	LI1029	-	phosphate transporter permease PstC
1027	 33.45	0	1270080..1270970	+	296	94987472	pstA	LI1030	-	phosphate ABC transporter, permease protein
1028	 30.75	-1	1270961..1271734	+	257	94987473	pstB	LI1031	-	phosphate ABC transporter ATP-binding protein
1029	 38.16	+1	1271838..1272293	-	151	94987474	-	LI1032	-	hypothetical protein
1030	 32.34	0	1272481..1273890	-	469	94987475	-	LI1033	-	hypothetical protein
1031	 32.90	0	1274250..1275641	-	463	94987476	-	LI1034	-	hypothetical protein
1032	 32.17	0	1276286..1277317	-	343	94987477	-	LI1035	-	hypothetical protein
1033	 33.75	0	1277447..1278403	-	318	94987478	-	LI1036	-	hypothetical protein
1034	 39.34	+1	1278568..1279566	-	332	94987479	-	LI1037	-	hypothetical protein
1035	 25.47	-2	1279875..1280561	-	228	94987480	-	LI1038	-	hypothetical protein
1036	 32.55	0	1281061..1282206	-	381	94987481	-	LI1039	-	hypothetical protein
1037	 33.04	0	1282447..1283466	-	339	94987482	-	LI1040	-	hypothetical protein
1038	 31.93	0	1283628..1284554	-	308	94987483	-	LI1041	-	hypothetical protein
1039	 34.83	0	1285000..1286004	-	334	94987484	-	LI1042	-	hypothetical protein
1040	 37.65	+1	1286368..1287339	-	323	94987485	hprA	LI1043	-	lactate dehydrogenase and related dehydrogenases
1041	 34.80	0	1287421..1288035	-	204	94987486	-	LI1044	-	hypothetical protein
1042	 32.40	0	1288038..1288997	-	319	94987487	pqiB	LI1045	-	paraquat-inducible protein B
1043	 34.73	0	1288994..1289782	-	262	94987488	-	LI1046	-	ABC-type transport system involved in resistance to organic solvents, ATPase component
1044	 34.88	0	1289790..1290950	-	386	94987489	ttg2B	LI1047	-	ABC-type transport system involved in resistance to organic solvents, permease component
1045	 34.91	0	1291103..1291672	-	189	94987490	grpE	LI1048	-	molecular chaperone GrpE (heat shock protein)
1046	 34.97	0	1292388..1293122	+	244	94987491	-	LI1049	-	hypothetical protein
1047	 34.49	0	1293526..1294392	+	288	94987492	-	LI1050	-	metal-dependent phosphoesterase
1048	 35.43	0	1294652..1297465	+	937	94987493	ileS	LI1051	-	isoleucyl-tRNA synthetase
1049	 32.32	0	1297490..1297984	+	164	94987494	lsp	LI1052	-	lipoprotein signal peptidase
1050	 36.71	0	1298127..1299044	+	305	94987495	-	LI1053	-	hypothetical protein
1051	 33.72	0	1299149..1299931	+	260	94987496	cheZ	LI1054	-	chemotaxis protein
1052	 33.60	0	1300313..1301428	+	371	94987497	lpxB	LI1055	-	Lipid A disaccharide synthetase
1053	 27.60	-2	1301682..1302152	+	156	94987498	-	LI1056	-	hypothetical protein
1054	 31.91	0	1302188..1302889	+	233	94987499	atpA	LI1057	-	F0F1-type ATP synthase, subunit a
1055	 37.07	0	1302949..1303296	+	115	94987500	atpC	LI1058	-	F0F1-type ATP synthase, subunit c
1056	 34.59	0	1303342..1303977	+	211	94987501	-	LI1059	-	redox-sensing transcriptional repressor Rex
1057	 34.92	0	1304124..1304564	+	146	94987502	-	LI1060	-	flagellar biosynthesis chaperone
1058	 36.52	0	1304581..1305333	+	250	94987503	-	LI1061	-	hypothetical protein
1059	 36.30	0	1305357..1306130	+	257	94987504	truA	LI1062	-	tRNA pseudouridine synthase A
1060	 37.59	+1	1306382..1306804	+	140	94987505	-	LI1063	-	hypothetical protein
1061	 36.90	0	1307072..1307548	+	158	94987506	fdhF	LI1064	-	Fe-S-cluster-containing hydrogenase components 1
1062	 35.39	0	1307621..1308496	-	291	94987507	rfbD	LI1065	-	dTDP-4-dehydrorhamnose reductase
1063	 34.90	0	1308493..1309512	-	339	94987508	rfbB	LI1066	-	dTDP-D-glucose 4,6-dehydratase
1064	 31.44	0	1309801..1310592	+	263	94987509	-	LI1067	-	cobalamin biosynthesis protein CbiK, Co2+ chelatase
1065	 32.82	0	1310656..1311624	+	322	94987510	-	LI1068	-	hypothetical protein
1066	 30.00	-1	1312240..1312479	+	79	94987511	rnpA	LI1069	-	RNase P protein component
1067	 34.96	0	1312833..1314431	+	532	94987512	yidC	LI1070	-	preprotein translocase subunit YidC
1068	 33.04	0	1314455..1315468	+	337	94987513	jag	LI1071	-	RNA-binding protein
1069	 35.22	0	1315534..1316913	+	459	94987514	trmE	LI1072	-	tRNA modification GTPase TrmE
1070	 34.67	0	1316917..1317513	+	198	94987515	rncS	LI1073	-	ribonuclease D
1071	 32.76	0	1317595..1320534	+	979	94987516	-	LI1074	-	endonuclease
1072	 38.20	+1	1320591..1321721	+	376	94987517	ncd2	LI1075	-	dioxygenases related to 2-nitropropane dioxygenase
1073	 33.03	0	1321808..1322791	-	327	94987518	glk	LI1076	-	glucokinase
1074	 33.46	0	1322933..1323712	-	259	94987519	-	LI1077	-	hypothetical protein
1075	 30.75	-1	1324889..1326631	+	580	94987520	HydH	LI1078	-	Signal transduction histidine kinase
1076	 35.88	0	1326651..1328066	+	471	94987521	hydG	LI1079	-	response regulator
1077	 36.21	0	1328199..1328615	+	138	94987522	-	LI1080	-	hypothetical protein
1078	 36.38	0	1328645..1329628	-	327	94987523	oppD	LI1081	-	oligopeptide ABC transporter
1079	 40.41	+1	1330153..1330491	+	112	94987524	feoA	LI1082	-	Fe2+ transport system protein A
1080	 35.97	0	1330619..1332820	+	733	94987525	feoB	LI1083	-	Fe2+ transport system protein B
1081	 33.17	0	1332824..1334038	-	404	94987526	glpC	LI1084	-	sn-glycerol-3-phosphate dehydrogenase subunit C
1082	 32.93	0	1334050..1335303	-	417	94987527	-	LI1085	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
1083	 34.68	0	1335296..1336924	-	542	94987528	glpA	LI1086	-	anaerobic glycerol-3-phosphate dehydrogenase subunit A
1084	 35.51	0	1337223..1337819	-	198	94987529	-	LI1087	-	hypothetical protein
1085	 30.10	-1	1337816..1338124	-	102	94987530	-	LI1088	-	hypothetical protein
34.48	MEAN

3.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.