IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
897	 50.00	0	1071922..1072041	-	39	104774154	-	Ldb1267	-	hypothetical protein
898	 54.07	0	1072224..1073120	-	298	104774155	-	Ldb1268	-	putative mutarotase
899	 54.48	0	1073202..1074596	-	464	104774156	hslU	Ldb1269	-	ATP-dependent protease ATP-binding subunit
900	 56.93	+1	1074599..1075132	-	177	104774157	hslV	Ldb1270	-	ATP-dependent protease peptidase subunit
901	 51.24	0	1075242..1076129	-	295	104774158	xerC	Ldb1271	-	site-specific recombinase
902	 55.61	0	1076129..1077448	-	439	104774159	gidC	Ldb1272	-	tRNA (uracil-5-)-methyltransferase Gid
903	 55.49	0	1077580..1079763	-	727	104774160	topA	Ldb1273	-	DNA topoisomerase I
904	 52.26	0	1079890..1080729	-	279	104774161	smf	Ldb1274	-	DNA processing protein
905	 52.40	0	1080827..1081597	-	256	104774162	rnhB	Ldb1275	-	ribonuclease HII
906	 53.15	0	1081587..1082444	-	285	104774163	-	Ldb1276	-	putative GTP-binding protein
907	 49.35	0	1082519..1082749	-	76	104774164	-	Ldb1277	-	hypothetical protein
908	 55.20	0	1082753..1083598	-	281	104774165	-	Ldb1278	-	hypothetical protein
909	 52.34	0	1083733..1084395	+	220	104774166	hly	Ldb1279	-	hemolysin-like protein
910	 54.41	0	1084421..1085611	-	396	104774167	cca	Ldb1280	-	tRNA CCA-pyrophosphorylase
911	 52.22	0	1085692..1086591	+	299	104774168	-	Ldb1281	-	hypothetical protein
912	 50.29	0	1086630..1086800	-	56	104774169	-	Ldb1282	-	hypothetical protein
913	 48.81	0	1086772..1087023	-	83	104774170	-	Ldb1283	-	hypothetical protein
914	 56.97	+1	1087103..1087267	-	54	104774171	-	Ldb1284	-	hypothetical protein
915	 52.86	0	1087176..1087472	-	98	104774172	-	Ldb1285	-	hypothetical protein
916	 52.60	0	1087571..1087762	-	63	104774173	-	Ldb1286	-	hypothetical protein
917	 43.20	-1	1087793..1088086	-	97	104774174	-	Ldb1287	-	hypothetical protein
918	 54.09	0	1088238..1090010	-	590	104774175	-	Ldb1288	-	ABC transporter, ATP-binding/permease protein
919	 54.45	0	1090007..1091749	-	580	104774176	-	Ldb1289	-	ABC transporter, ATP-binding / permease protein
920	 53.82	0	1092143..1093045	+	300	104774177	-	Ldb1290	-	LysR family transcriptional regulator
921	 52.63	0	1093116..1093913	-	265	104774178	-	Ldb1291	-	hypothetical protein
922	 52.89	0	1094186..1094773	+	195	104774179	-	Ldb1292	-	putative membrane-associated phosphatase
923	 54.84	0	1094869..1095705	-	278	104774180	-	Ldb1293	-	hypothetical protein
924	 47.42	0	1096012..1097289	+	425	104774181	eno	Ldb1294	-	phosphopyruvate hydratase
925	 54.52	0	1097465..1097785	+	106	104774182	-	Ldb1295	-	hypothetical protein
926	 51.99	0	1097942..1099297	+	451	104774183	-	Ldb1296	-	hypothetical protein
927	 51.40	0	1099354..1099962	-	202	104774184	-	Ldb1297	-	hypothetical protein
928	 52.23	0	1100471..1101211	+	246	104774185	-	Ldb1298	-	amino acid ABC transporter ATP-binding protein
929	 53.58	0	1101253..1102734	+	493	104774186	-	Ldb1299	-	amino acid ABC transporter permease/substrate-binding protein
930	 53.57	0	1102782..1103636	-	284	104774187	-	Ldb1300	-	LysR family transcriptional regulator
931	 52.63	0	1103814..1106072	+	752	104774188	-	Ldb1301	-	cation transporting P-type ATPase ( Cd2+/Mg2+ transporter)
932	 51.32	0	1107194..1108327	-	377	104774189	-	Ldb1304	-	hypothetical protein
933	 50.29	0	1108445..1109470	-	341	104774190	ilvE	Ldb1305	-	branched-chain amino acid aminotransferase
934	 51.92	0	1109671..1110531	-	286	104774191	-	Ldb1306	-	cation efflux protein ( metal/H+ antiporter)
935	 52.81	0	1110670..1110972	+	100	104774192	-	Ldb1307	-	ArsR family transcriptional regulator
936	 54.88	0	1111052..1111594	-	180	104774193	apt	Ldb1308	-	adenine phosphoribosyltransferase
937	 52.66	0	1111569..1113845	-	758	104774194	recJ	Ldb1309	-	RecJ, single-stranded DNA specific exonuclease
938	 53.28	0	1113842..1114543	-	233	104774195	srtA	Ldb1310	-	sortase
939	 53.94	0	1114524..1116362	-	612	104774196	lepA	Ldb1311	-	GTP-binding protein LepA
940	 57.61	+1	1116484..1117620	-	378	104774197	dnaJ	Ldb1312	-	chaperone protein DnaJ (heat shock protein)
941	 50.57	0	1117703..1119547	-	614	104774198	dnaK	Ldb1313	-	molecular chaperone DnaK
942	 54.05	0	1119607..1120161	-	184	104774199	grpE	Ldb1314	-	chaperone protein GrpE (heat shock protein)
943	 49.31	0	1120206..1121288	-	360	104774200	hrcA	Ldb1315	-	heat-inducible transcription repressor
944	 50.91	0	1121390..1122328	-	312	104774201	ribC	Ldb1316	-	riboflavin kinase / FAD synthase
945	 44.20	-1	1124582..1125805	-	407	104774202	-	Ldb1320	-	transposase
946	 45.24	-1	1125916..1125999	+	27	104774203	-	Ldb1321	-	hypothetical protein
947	 42.86	-1	1125954..1126037	+	27	104774204	-	Ldb1322	-	hypothetical protein
948	 44.29	-1	1126676..1126885	-	69	104774205	-	Ldb1323	-	hypothetical protein
949	 31.03	-2	1126913..1127086	-	57	104774206	-	Ldb1324	-	hypothetical protein
950	 45.61	0	1127887..1128798	+	303	104774207	cysK2	Ldb1325	-	cysteine synthase
951	 45.82	0	1128820..1130004	+	394	104774208	-	Ldb1326	-	hypothetical protein
952	 51.62	0	1132244..1133140	-	298	104774209	truB	Ldb1330	-	pseudouridylate synthase
953	 51.79	0	1133191..1133553	-	120	104774210	rbfA	Ldb1331	-	ribosome-binding factor A
954	 53.71	0	1133566..1136043	-	825	104774211	infB	Ldb1332	-	translation initiation factor IF-2
955	 48.07	0	1136048..1136332	-	94	104774212	-	Ldb1333	-	putative ribosomal protein
956	 47.67	0	1136359..1136658	-	99	104774213	-	Ldb1334	-	hypothetical protein
957	 52.01	0	1136668..1137888	-	406	162139854	nusA	Ldb1335	-	transcription elongation factor NusA
958	 48.43	0	1137908..1138384	-	158	104774215	-	Ldb1336	-	hypothetical protein
959	 52.57	0	1138494..1142729	-	1411	104774216	polC	Ldb1337	-	DNA polymerase III, alpha subunit ( type) (PolC)
960	 53.53	0	1142844..1144541	-	565	104774217	proS	Ldb1338	-	prolyl-tRNA synthetase
961	 53.53	0	1144581..1145828	-	415	104774218	-	Ldb1339	-	putative metalloprotease
962	 52.38	0	1145838..1146635	-	265	104774219	cdsA	Ldb1340	-	phosphatidate cytidylyltransferase
963	 50.82	0	1146641..1147372	-	243	104774220	uppS	Ldb1341	-	undecaprenyl pyrophosphate synthetase
964	 50.90	0	1147375..1147932	-	185	104774221	frr	Ldb1342	-	ribosome recycling factor
965	 52.34	0	1147932..1148657	-	241	104774222	pyrH	Ldb1343	-	uridylate kinase
966	 48.49	0	1148807..1149835	-	342	104774223	tsf	Ldb1344	-	elongation factor Ts
967	 47.11	0	1149898..1150659	-	253	104774224	rpsB	Ldb1345	-	30S ribosomal protein S2
968	 51.53	0	1150823..1151833	-	336	104774225	-	Ldb1346	-	hypothetical protein
969	 53.98	0	1151904..1152518	+	204	104774226	-	Ldb1347	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
970	 53.39	0	1152600..1153586	-	328	104774227	asd	Ldb1348	-	aspartate semialdehyde dehydrogenase
971	 52.35	0	1153587..1154927	-	446	104774228	ask	Ldb1349	-	aspartate kinase
972	 53.79	0	1154920..1156068	-	382	104774229	-	Ldb1350	-	homoserine dehydrogenase
973	 53.56	0	1156209..1156643	+	144	104774230	pheB	Ldb1351	-	hypothetical protein
974	 50.36	0	1156692..1158482	-	596	104774231	-	Ldb1352	-	ABC transporter, ATP-binding/permease protein
975	 52.75	0	1158475..1160235	-	586	104774232	-	Ldb1353	-	ABC transporter, ATP-binding/permease protein
976	 45.78	0	1160345..1160569	-	74	104774233	-	Ldb1354	-	hypothetical protein
977	 45.57	0	1160682..1160918	-	78	104774234	-	Ldb1355	-	hypothetical protein
978	 53.62	0	1161073..1161693	+	206	104774235	lexA	Ldb1356	-	LexA repressor
979	 54.77	0	1161893..1162741	+	282	104774236	-	Ldb1357	-	putative sugar uptake protein
980	 51.88	0	1162842..1163720	-	292	104774237	-	Ldb1358	-	glutamine-binding protein
981	 50.94	0	1163916..1164449	-	177	104774238	-	Ldb1359	-	hypothetical protein
982	 52.75	0	1164506..1166740	-	744	104774239	-	Ldb1360	-	putative helicase
983	 52.99	0	1166763..1168085	-	440	104774240	-	Ldb1361	-	hypothetical protein
984	 51.24	0	1168085..1169983	-	632	104774241	-	Ldb1362	-	hypothetical protein
985	 52.23	0	1170116..1171957	-	613	104774242	-	Ldb1363	-	putative secreted 5'-nucleotidase
986	 49.71	0	1172223..1172570	-	115	104774243	rplS	Ldb1364	-	50S ribosomal protein L19
987	 52.51	0	1174507..1174965	-	152	104774244	-	Ldb1367	-	hypothetical protein
988	 52.83	0	1174971..1175447	-	158	104774245	-	Ldb1368	-	hypothetical protein
989	 54.47	0	1175462..1176199	-	245	104774246	trmD	Ldb1369	-	tRNA (guanine-N1)-methyltransferase
990	 51.79	0	1176199..1176702	-	167	104774247	rimM	Ldb1370	-	16S rRNA processing protein RimM
991	 44.32	-1	1176764..1177036	-	90	104774248	rpsP	Ldb1371	-	30S ribosomal protein S16
992	 54.72	0	1177131..1178561	-	476	104774249	ffh	Ldb1372	-	Signal recognition particle protein Ffh
993	 48.83	0	1178563..1178904	-	113	104774250	-	Ldb1373	-	hypothetical protein
994	 50.11	0	1180423..1181751	-	442	104774251	ftsY	Ldb1378	-	Signal recognition particle-docking protein FtsY
995	 54.26	0	1181754..1185299	-	1181	104774252	smc	Ldb1379	-	chromosome partition protein SMC
996	 49.86	0	1185314..1186009	-	231	104774253	rnc	Ldb1380	-	ribonuclease III
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.