IslandPathversion 1.0

IslandPath Analysis: Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.73 STD DEV: 5.22
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete genome - 1..1864998
1562 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
803	 41.46	-1	944951..945196	-	81	104774060	-	Ldb1107	-	hypothetical protein
804	 43.00	-1	945314..945520	-	68	104774061	-	Ldb1108	-	hypothetical protein
805	 42.59	-1	946884..948353	-	489	104774062	-	Ldb1112	-	putative fumarate reductase (flavoprotein)
806	 40.74	-1	949331..949384	-	17	104774063	-	Ldb1116	-	hypothetical protein
807	 48.30	0	949577..949723	+	48	104774064	-	Ldb1117	-	hypothetical protein
808	 48.00	0	949786..951660	-	624	104774065	-	Ldb1118	-	ABC transporter, permease protein
809	 49.67	0	951683..952435	-	250	104774066	-	Ldb1119	-	ABC transporter, ATP-binding protein
810	 47.57	0	952597..952905	-	102	104774067	-	Ldb1120	-	hypothetical protein
811	 48.37	0	953137..953535	-	132	104774068	-	Ldb1121	-	putative phosphotyrosine protein phosphatase
812	 40.00	-2	953548..954042	-	164	104774069	-	Ldb1122	-	hypothetical protein
813	 48.76	0	954081..954443	-	120	104774070	-	Ldb1123	-	hypothetical protein
814	 46.56	0	954358..954546	-	62	104774071	-	Ldb1124	-	hypothetical protein
815	 48.85	0	956420..956986	-	188	104774072	-	Ldb1128	-	putative integrase/recombinase
816	 45.43	-1	958325..958696	-	123	104774073	-	Ldb1131	-	hypothetical protein
817	 47.92	0	958630..959061	-	143	104774074	-	Ldb1132	-	multidrug efflux pump transcriptional regulator
818	 49.96	0	959155..960441	+	428	104774075	-	Ldb1133	-	putative multidrug efflux protein
819	 52.27	0	961314..962390	+	358	104774076	carA2b	Ldb1137	-	carbamoyl phosphate synthase small subunit
820	 43.84	-1	966737..968677	-	646	104774077	-	Ldb1145	-	hypothetical protein
821	 45.41	-1	968681..972490	-	1269	104774078	-	Ldb1146	-	hypothetical protein
822	 50.79	0	972694..973644	-	316	104774079	-	Ldb1147	-	D-isomer specific 2-hydroxyacid dehydrogenase
823	 52.37	0	974293..976020	+	575	104774080	-	Ldb1149	-	ABC transporter, ATP-binding / permease protein
824	 49.77	0	976020..977777	+	585	104774081	-	Ldb1150	-	ABC transporter, ATP-binding/permease protein
825	 51.13	0	977860..978168	-	102	104774082	-	Ldb1151	-	hypothetical protein
826	 50.67	0	978609..979283	-	224	104774083	-	Ldb1153	-	hypothetical protein
827	 39.54	-2	980458..980940	-	160	104774084	-	Ldb1156	-	hypothetical protein
828	 52.43	0	981147..981413	-	88	104774085	-	Ldb1157	-	putative acetyltransferase
829	 50.14	0	981415..982134	-	239	104774086	pgp	Ldb1158	-	putative phosphoglycolate phosphatase
830	 44.97	-1	982286..982474	+	62	104774087	-	Ldb1159	-	hypothetical protein
831	 51.46	0	983004..983174	-	56	104774088	-	Ldb1160	-	hypothetical protein
832	 51.17	0	983205..983675	-	156	104774089	-	Ldb1161	-	hypothetical protein
833	 45.55	0	984124..984909	-	261	104774090	-	Ldb1162	-	putative exonuclease
834	 46.63	0	984914..985507	-	197	104774091	-	Ldb1163	-	hypothetical protein
835	 50.65	0	985521..986294	-	257	104774092	-	Ldb1164	-	hypothetical protein
836	 45.72	0	986287..986859	-	190	104774093	-	Ldb1165	-	acyltransferase
837	 40.00	-2	988501..988695	-	64	104774094	-	Ldb1169	-	hypothetical protein
838	 51.65	0	988742..989587	-	281	104774095	-	Ldb1170	-	hypothetical protein
839	 52.63	0	989635..991059	-	474	104774096	-	Ldb1171	-	putative RNA methylase
840	 50.74	0	991052..991999	-	315	104774097	-	Ldb1172	-	hypothetical protein
841	 50.74	0	992026..992766	-	246	104774098	-	Ldb1173	-	hypothetical protein
842	 54.80	0	992877..993053	-	58	104774099	-	Ldb1174	-	hypothetical protein
843	 52.29	0	993223..993834	-	203	104774100	pcp	Ldb1175	-	pyroglutamyl-peptidase I
844	 53.25	0	993913..994665	+	250	104774101	-	Ldb1176	-	hypothetical protein
845	 54.72	0	995832..997262	-	476	104774102	gapN	Ldb1179	-	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
846	 51.02	0	997363..998883	-	506	104774103	-	Ldb1180	-	glycine betaine ABC transporter, substrate binding / permease protein
847	 52.49	0	998887..999810	-	307	104774104	-	Ldb1181	-	glycine betaine ABC transporter, ATP-binding protein
848	 48.92	0	1000141..1000602	+	153	104774105	-	Ldb1182	-	DeoR family transcriptional regulator
849	 50.11	0	1001537..1002448	-	303	104774106	htpX2	Ldb1185	-	protease
850	 36.62	-2	1002600..1003025	-	141	104774107	-	Ldb1186	-	hypothetical protein
851	 51.83	0	1003169..1004341	-	390	104774108	patC	Ldb1187	-	cystathionine beta-lyase
852	 33.95	-2	1004359..1004520	-	53	104774109	-	Ldb1188	-	hypothetical protein
853	 47.58	0	1004611..1010451	-	1946	104774110	prtB	Ldb1189	-	proteinase precursor
854	 51.21	0	1011488..1011817	-	109	104774111	-	Ldb1191	-	hypothetical protein
855	 47.89	0	1011780..1011992	-	70	104774112	-	Ldb1192	-	hypothetical protein
856	 53.82	0	1012113..1012727	+	204	104774113	-	Ldb1193	-	hypothetical protein
857	 54.18	0	1013078..1014094	+	338	104774114	asnA	Ldb1194	-	asparagine synthetase AsnA
858	 53.73	0	1014170..1015468	+	432	104774115	asnC	Ldb1195	-	asparaginyl-tRNA synthetase
859	 52.56	0	1018109..1021135	-	1008	104774116	lacZ	Ldb1201	-	Beta-galactosidase
860	 53.13	0	1021139..1023022	-	627	104774117	lacS	Ldb1202	-	lactose permease
861	 42.86	-1	1023406..1023489	-	27	104774118	-	Ldb1204	-	hypothetical protein
862	 45.24	-1	1023444..1023527	-	27	104774119	-	Ldb1205	-	hypothetical protein
863	 43.87	-1	1023638..1024861	+	407	104774120	-	Ldb1206	-	transposase
864	 49.58	0	1027620..1028456	+	278	104774121	-	Ldb1214	-	hypothetical protein
865	 49.38	0	1028499..1029065	+	188	104774122	lepB	Ldb1215	-	signal peptidase I
866	 50.00	0	1029135..1029320	+	61	104774123	-	Ldb1216	-	hypothetical protein
867	 52.78	0	1029712..1030950	-	412	104774124	pepT1	Ldb1217	-	peptidase T
868	 52.88	0	1030994..1031791	-	265	104774125	-	Ldb1218	-	hypothetical protein
869	 52.67	0	1031784..1032476	-	230	104774126	-	Ldb1219	-	hypothetical protein
870	 49.66	0	1032620..1033060	+	146	104774127	-	Ldb1220	-	hypothetical protein
871	 52.89	0	1033060..1033908	+	282	104774128	-	Ldb1221	-	hypothetical protein
872	 42.19	-1	1035035..1035271	-	78	104774129	-	Ldb1224	-	hypothetical protein
873	 43.54	-1	1035909..1036241	-	110	104774130	-	Ldb1226	-	hypothetical protein
874	 37.65	-2	1039518..1041392	-	624	104774131	mod	Ldb1230	-	Type III restriction-modification system methyltransferase
875	 39.42	-2	1041385..1042008	-	207	104774132	-	Ldb1231	-	hypothetical protein
876	 41.77	-1	1042009..1045245	-	1078	104774133	-	Ldb1232	-	putative helicase
877	 56.67	+1	1046324..1046503	-	59	104774134	-	Ldb1234	-	hypothetical protein
878	 48.77	0	1046535..1046696	-	53	104774135	-	Ldb1235	-	hypothetical protein
879	 42.90	-1	1047823..1050111	-	762	104774136	-	Ldb1239	-	cation transporting P-type ATPase ( copper transporter)
880	 45.48	-1	1051090..1051410	+	106	104774137	-	Ldb1242	-	hypothetical protein
881	 51.19	0	1052095..1053231	-	378	104774138	-	Ldb1245	-	RNA polymerase sigma factor
882	 54.87	0	1053267..1054385	-	372	104774139	sigA	Ldb1246	-	RNA polymerase sigma factor RpoD
883	 52.37	0	1054357..1056195	-	612	104774140	dnaG	Ldb1247	-	DNA primase
884	 52.67	0	1056227..1058320	-	697	104774141	glyS	Ldb1248	-	glycyl-tRNA synthetase, beta subunit
885	 52.63	0	1058286..1059197	-	303	104774142	glyQ	Ldb1249	-	glycyl-tRNA synthetase subunit alpha
886	 55.20	0	1059462..1060211	-	249	104774143	recO	Ldb1250	-	DNA repair protein RecO (recombination protein O)
887	 50.33	0	1060211..1061116	-	301	104774144	era	Ldb1251	-	GTP-binding protein Era
888	 50.71	0	1061100..1061519	-	139	104774145	cdd	Ldb1252	-	cytidine deaminase
889	 51.43	0	1061521..1062045	-	174	104774146	-	Ldb1253	-	hypothetical protein
890	 53.06	0	1062045..1062992	-	315	104774147	phoH	Ldb1254	-	PhoH homologue
891	 43.50	-1	1063146..1063322	-	58	104774148	rpsU	Ldb1255	-	30S ribosomal protein S21
892	 50.23	0	1063491..1064348	+	285	104774149	-	Ldb1256	-	hypothetical protein
893	 45.05	-1	1064408..1064629	-	73	104774150	-	Ldb1257	-	hypothetical protein
894	 48.02	0	1064746..1065630	-	294	104774151	-	Ldb1258	-	hypothetical protein
895	 53.33	0	1067549..1068733	-	394	104774152	-	Ldb1263	-	aromatic amino acid aminotransferase
896	 55.32	0	1070581..1071276	-	231	104774153	-	Ldb1266	-	hypothetical protein
897	 50.00	0	1071922..1072041	-	39	104774154	-	Ldb1267	-	hypothetical protein
898	 54.07	0	1072224..1073120	-	298	104774155	-	Ldb1268	-	putative mutarotase
899	 54.48	0	1073202..1074596	-	464	104774156	hslU	Ldb1269	-	ATP-dependent protease ATP-binding subunit
900	 56.93	+1	1074599..1075132	-	177	104774157	hslV	Ldb1270	-	ATP-dependent protease peptidase subunit
901	 51.24	0	1075242..1076129	-	295	104774158	xerC	Ldb1271	-	site-specific recombinase
902	 55.61	0	1076129..1077448	-	439	104774159	gidC	Ldb1272	-	tRNA (uracil-5-)-methyltransferase Gid
50.73	MEAN

5.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.